Wall clock time and date at job start Sun Mar 29 2020 21:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00068 * 2 1 4 4 H 1.48501 * 109.47328 * 240.00748 * 3 2 1 5 5 H 1.48501 * 109.46929 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47110 * 120.00368 * 3 2 1 7 7 C 1.37879 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99393 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00112 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47005 * 179.97438 * 9 7 2 11 11 C 1.34413 * 124.35270 * 269.97615 * 10 9 7 12 12 O 1.21280 * 124.94285 * 0.45368 * 11 10 9 13 13 C 1.51281 * 110.11550 * 180.42778 * 11 10 9 14 14 C 1.54626 * 104.19654 * 16.25296 * 13 11 10 15 15 C 1.46766 * 124.34478 * 89.99976 * 10 9 7 16 16 H 1.09002 * 110.24599 * 43.96213 * 15 10 9 17 17 C 1.50701 * 110.24518 * 282.04903 * 15 10 9 18 18 O 1.20816 * 120.00248 * 1.23029 * 17 15 10 19 19 O 1.34231 * 119.99751 * 181.22977 * 17 15 10 20 20 H 0.97001 * 120.00253 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.46920 * 60.00180 * 9 7 2 22 22 H 1.08998 * 109.46750 * 299.99967 * 9 7 2 23 23 H 1.09008 * 110.48359 * 134.93216 * 13 11 10 24 24 H 1.08996 * 110.48862 * 257.57354 * 13 11 10 25 25 H 1.08995 * 110.96981 * 217.08137 * 14 13 11 26 26 H 1.09005 * 110.96946 * 93.31554 * 14 13 11 27 27 H 0.96697 * 116.99980 * 179.97438 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1027 1.6965 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0018 11 6 2.6946 -4.1890 -1.1121 12 8 2.4208 -3.8578 -2.2462 13 6 3.6399 -5.3104 -0.7413 14 6 3.3250 -5.5958 0.7454 15 6 2.7420 -4.2426 1.2093 16 1 1.9463 -4.4040 1.9366 17 6 3.8263 -3.3826 1.8059 18 8 4.1137 -2.3285 1.2903 19 8 4.4727 -3.7879 2.9103 20 1 -0.4850 0.8400 0.0004 21 1 0.6240 -2.5567 -0.8903 22 1 0.6247 -2.5571 0.8897 23 1 3.4418 -6.1931 -1.3495 24 1 4.6754 -4.9906 -0.8573 25 1 4.2332 -5.8389 1.2968 26 1 2.5868 -6.3921 0.8419 27 1 5.1606 -3.2027 3.2559 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004683023.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:20 Heat of formation + Delta-G solvation = -118.231345 kcal Electronic energy + Delta-G solvation = -14650.225102 eV Core-core repulsion = 11987.400429 eV Total energy + Delta-G solvation = -2662.824673 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.083 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.52068 -38.81163 -35.91656 -35.41186 -33.32429 -31.41726 -28.19618 -26.93191 -23.39152 -22.64694 -21.00487 -18.57987 -17.64793 -17.09551 -16.23396 -15.92953 -15.03109 -14.77986 -14.47029 -14.26873 -13.16592 -12.93681 -12.75399 -12.35599 -12.05386 -11.58207 -11.22011 -11.17491 -11.00448 -10.85815 -10.59797 -10.30979 -10.04911 -9.20217 -9.00389 -8.35473 -7.89110 -5.96716 -3.97275 2.66906 2.99308 3.40403 3.42313 3.48041 3.52325 3.92285 4.54677 4.57179 4.66311 4.98670 5.29284 5.38771 5.55174 5.69408 5.76500 5.93125 6.02485 6.83204 6.87406 7.29964 7.48175 8.04977 8.06831 8.27773 8.39163 8.90488 9.21120 9.67612 11.12556 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.031494 B = 0.012220 C = 0.010087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.858011 B = 2290.759304 C = 2775.128117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.055 3.945 3 Si 0.901 3.099 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.523 4.523 8 H 0.085 0.915 9 C 0.253 3.747 10 N -0.581 5.581 11 C 0.513 3.487 12 O -0.529 6.529 13 C -0.162 4.162 14 C -0.119 4.119 15 C 0.147 3.853 16 H 0.119 0.881 17 C 0.448 3.552 18 O -0.461 6.461 19 O -0.528 6.528 20 H 0.262 0.738 21 H 0.046 0.954 22 H 0.033 0.967 23 H 0.100 0.900 24 H 0.097 0.903 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.232 -11.511 6.235 14.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.145 4.145 3 Si 0.729 3.271 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.561 4.561 8 H 0.103 0.897 9 C 0.135 3.865 10 N -0.314 5.314 11 C 0.300 3.700 12 O -0.406 6.406 13 C -0.203 4.203 14 C -0.156 4.156 15 C 0.039 3.961 16 H 0.137 0.863 17 C 0.286 3.714 18 O -0.343 6.343 19 O -0.340 6.340 20 H 0.071 0.929 21 H 0.064 0.936 22 H 0.051 0.949 23 H 0.118 0.882 24 H 0.115 0.885 25 H 0.113 0.887 26 H 0.113 0.887 27 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 6.619 -11.061 5.304 13.938 hybrid contribution 0.886 1.548 0.442 1.838 sum 7.505 -9.512 5.746 13.410 Atomic orbital electron populations 1.69935 1.05991 1.26961 1.51572 1.24958 0.94812 0.99283 0.95461 0.86511 0.79366 0.82568 0.78663 1.20270 1.21456 1.20395 1.21878 0.95106 0.89815 1.49334 0.89670 1.19364 0.86547 0.82093 0.98498 1.48578 1.44032 1.35244 1.03566 1.20585 0.80938 0.83505 0.84980 1.90686 1.61604 1.67332 1.20976 1.22449 1.01118 0.99732 0.96976 1.22598 1.02586 0.94890 0.95569 1.20954 0.93825 0.90968 0.90376 0.86344 1.24103 0.82687 0.86378 0.78260 1.90837 1.61651 1.22215 1.59598 1.84496 1.51615 1.54290 1.43643 0.92893 0.93574 0.94910 0.88157 0.88451 0.88740 0.88713 0.73872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.57 13.29 55.43 0.74 -26.84 15 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 15 3 Si 0.90 23.26 29.54 -169.99 -5.02 18.24 15 4 H -0.28 -7.19 7.11 56.52 0.40 -6.79 15 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 15 6 H -0.28 -7.09 7.11 56.52 0.40 -6.69 15 7 C -0.52 -15.43 8.44 -34.44 -0.29 -15.72 15 8 H 0.09 2.60 5.36 -52.48 -0.28 2.32 15 9 C 0.25 6.71 5.67 -5.19 -0.03 6.68 15 10 N -0.58 -12.52 2.26 -167.56 -0.38 -12.89 15 11 C 0.51 10.88 8.02 -10.86 -0.09 10.79 15 12 O -0.53 -13.64 17.59 5.56 0.10 -13.54 15 13 C -0.16 -2.28 6.85 -26.74 -0.18 -2.46 15 14 C -0.12 -1.34 6.69 -25.10 -0.17 -1.51 15 15 C 0.15 2.34 3.60 -68.16 -0.25 2.09 15 16 H 0.12 1.64 8.14 -51.93 -0.42 1.22 15 17 C 0.45 7.63 7.62 36.01 0.27 7.90 15 18 O -0.46 -10.23 13.81 -18.74 -0.26 -10.49 15 19 O -0.53 -6.52 13.23 -39.26 -0.52 -7.04 15 20 H 0.26 7.57 8.31 -40.82 -0.34 7.23 15 21 H 0.05 1.36 7.93 -51.93 -0.41 0.94 15 22 H 0.03 0.87 8.14 -51.93 -0.42 0.44 15 23 H 0.10 1.17 8.14 -51.92 -0.42 0.75 15 24 H 0.10 1.30 8.14 -51.93 -0.42 0.88 15 25 H 0.09 0.86 7.73 -51.93 -0.40 0.46 15 26 H 0.09 0.84 8.14 -51.93 -0.42 0.41 15 27 H 0.40 3.49 9.10 45.56 0.41 3.91 15 LS Contribution 242.52 15.07 3.65 3.65 Total: -1.00 -36.89 242.52 -4.44 -41.33 By element: Atomic # 1 Polarization: 0.18 SS G_CDS: -1.93 Total: -1.75 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: -0.83 Total: 9.33 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.36 Total: -39.73 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -0.68 Total: -31.07 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -5.02 Total: 18.24 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -36.89 -4.44 -41.33 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004683023.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.902 kcal (2) G-P(sol) polarization free energy of solvation -36.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds