Wall clock time and date at job start Sun Mar 29 2020 21:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00068 * 2 1 4 4 H 1.48501 * 109.47328 * 240.00748 * 3 2 1 5 5 H 1.48501 * 109.46929 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47110 * 120.00368 * 3 2 1 7 7 C 1.37879 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99393 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00112 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47005 * 179.97438 * 9 7 2 11 11 C 1.34413 * 124.35270 * 269.97615 * 10 9 7 12 12 O 1.21280 * 124.94285 * 0.45368 * 11 10 9 13 13 C 1.51281 * 110.11550 * 180.42778 * 11 10 9 14 14 C 1.54626 * 104.19654 * 16.25296 * 13 11 10 15 15 C 1.46766 * 124.34478 * 89.99976 * 10 9 7 16 16 H 1.09002 * 110.24599 * 43.96213 * 15 10 9 17 17 C 1.50701 * 110.24518 * 282.04903 * 15 10 9 18 18 O 1.20816 * 120.00248 * 1.23029 * 17 15 10 19 19 O 1.34231 * 119.99751 * 181.22977 * 17 15 10 20 20 H 0.97001 * 120.00253 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.46920 * 60.00180 * 9 7 2 22 22 H 1.08998 * 109.46750 * 299.99967 * 9 7 2 23 23 H 1.09008 * 110.48359 * 134.93216 * 13 11 10 24 24 H 1.08996 * 110.48862 * 257.57354 * 13 11 10 25 25 H 1.08995 * 110.96981 * 217.08137 * 14 13 11 26 26 H 1.09005 * 110.96946 * 93.31554 * 14 13 11 27 27 H 0.96697 * 116.99980 * 179.97438 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1027 1.6965 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0018 11 6 2.6946 -4.1890 -1.1121 12 8 2.4208 -3.8578 -2.2462 13 6 3.6399 -5.3104 -0.7413 14 6 3.3250 -5.5958 0.7454 15 6 2.7420 -4.2426 1.2093 16 1 1.9463 -4.4040 1.9366 17 6 3.8263 -3.3826 1.8059 18 8 4.1137 -2.3285 1.2903 19 8 4.4727 -3.7879 2.9103 20 1 -0.4850 0.8400 0.0004 21 1 0.6240 -2.5567 -0.8903 22 1 0.6247 -2.5571 0.8897 23 1 3.4418 -6.1931 -1.3495 24 1 4.6754 -4.9906 -0.8573 25 1 4.2332 -5.8389 1.2968 26 1 2.5868 -6.3921 0.8419 27 1 5.1606 -3.2027 3.2559 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004683023.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:20 Heat of formation + Delta-G solvation = -147.225018 kcal Electronic energy + Delta-G solvation = -14651.482362 eV Core-core repulsion = 11987.400429 eV Total energy + Delta-G solvation = -2664.081933 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.083 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.92495 -40.26185 -37.42253 -36.80042 -35.35496 -33.16255 -29.53394 -28.91724 -25.13526 -24.16425 -22.28270 -20.19206 -19.01393 -18.76023 -17.92374 -17.58241 -16.60760 -16.34658 -16.05122 -15.89372 -14.61128 -14.60414 -14.32303 -13.83017 -13.64095 -13.38792 -12.89578 -12.76184 -12.54487 -12.41063 -12.29079 -12.02410 -11.83913 -11.02958 -10.74185 -10.61747 -9.69867 -8.22706 -6.31043 1.30730 1.34904 1.36871 1.42671 1.54824 2.08607 2.33805 2.52510 3.07037 3.35400 3.54634 3.98117 4.24909 4.44725 4.53999 4.76682 4.93851 5.03238 5.11196 5.14078 5.50850 5.74933 5.88374 6.09896 6.40147 6.82281 7.20886 7.23976 7.42147 8.85494 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.031494 B = 0.012220 C = 0.010087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.858011 B = 2290.759304 C = 2775.128117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.962 3.038 4 H -0.281 1.281 5 H -0.275 1.275 6 H -0.271 1.271 7 C -0.535 4.535 8 H 0.074 0.926 9 C 0.266 3.734 10 N -0.593 5.593 11 C 0.492 3.508 12 O -0.593 6.593 13 C -0.147 4.147 14 C -0.095 4.095 15 C 0.132 3.868 16 H 0.142 0.858 17 C 0.458 3.542 18 O -0.523 6.523 19 O -0.504 6.504 20 H 0.265 0.735 21 H 0.003 0.997 22 H 0.029 0.971 23 H 0.131 0.869 24 H 0.108 0.892 25 H 0.130 0.870 26 H 0.131 0.869 27 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.771 -13.172 7.899 17.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.195 4.195 3 Si 0.787 3.213 4 H -0.207 1.207 5 H -0.199 1.199 6 H -0.196 1.196 7 C -0.574 4.574 8 H 0.092 0.908 9 C 0.145 3.855 10 N -0.324 5.324 11 C 0.282 3.718 12 O -0.474 6.474 13 C -0.186 4.186 14 C -0.132 4.132 15 C 0.026 3.974 16 H 0.160 0.840 17 C 0.298 3.702 18 O -0.411 6.411 19 O -0.317 6.317 20 H 0.074 0.926 21 H 0.021 0.979 22 H 0.047 0.953 23 H 0.150 0.850 24 H 0.126 0.874 25 H 0.148 0.852 26 H 0.149 0.851 27 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 8.192 -12.775 7.044 16.731 hybrid contribution 0.431 2.002 0.000 2.048 sum 8.623 -10.772 7.044 15.493 Atomic orbital electron populations 1.70034 1.07186 1.27909 1.52273 1.25798 0.95758 1.02729 0.95216 0.85561 0.78313 0.78879 0.78539 1.20650 1.19937 1.19578 1.22135 0.94805 0.91411 1.49056 0.90788 1.18779 0.87118 0.83421 0.96133 1.48513 1.43466 1.34070 1.06396 1.21977 0.81150 0.84786 0.83915 1.90631 1.63836 1.69538 1.23433 1.22464 0.99188 0.97497 0.99484 1.22754 1.04830 0.92564 0.93038 1.21489 0.94511 0.92559 0.88865 0.84036 1.24235 0.82282 0.85288 0.78395 1.90822 1.63794 1.24829 1.61618 1.84432 1.51694 1.54072 1.41465 0.92612 0.97858 0.95276 0.85046 0.87385 0.85213 0.85112 0.71578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.24 13.29 21.45 0.28 -57.95 15 2 C 0.00 0.17 5.46 84.66 0.46 0.63 15 3 Si 0.96 48.49 29.54 68.60 2.03 50.52 15 4 H -0.28 -14.21 7.11 99.48 0.71 -13.50 15 5 H -0.27 -13.08 7.11 99.48 0.71 -12.37 15 6 H -0.27 -13.21 7.11 99.48 0.71 -12.50 15 7 C -0.54 -32.62 8.44 25.60 0.22 -32.41 15 8 H 0.07 4.65 5.36 -2.91 -0.02 4.64 15 9 C 0.27 14.69 5.67 85.63 0.49 15.18 15 10 N -0.59 -25.63 2.26 -802.63 -1.81 -27.44 15 11 C 0.49 20.89 8.02 87.90 0.71 21.59 15 12 O -0.59 -31.82 17.59 -3.03 -0.05 -31.88 15 13 C -0.15 -3.63 6.85 30.59 0.21 -3.42 15 14 C -0.09 -1.65 6.69 31.65 0.21 -1.43 15 15 C 0.13 3.85 3.60 44.70 0.16 4.01 15 16 H 0.14 3.48 8.14 -2.39 -0.02 3.46 15 17 C 0.46 14.56 7.62 71.24 0.54 15.10 15 18 O -0.52 -23.09 13.81 22.00 0.30 -22.79 15 19 O -0.50 -10.47 13.23 -51.42 -0.68 -11.15 15 20 H 0.27 15.57 8.31 -92.71 -0.77 14.80 15 21 H 0.00 0.21 7.93 -2.39 -0.02 0.19 15 22 H 0.03 1.60 8.14 -2.39 -0.02 1.58 15 23 H 0.13 2.50 8.14 -2.38 -0.02 2.48 15 24 H 0.11 2.51 8.14 -2.39 -0.02 2.50 15 25 H 0.13 1.48 7.73 -2.39 -0.02 1.46 15 26 H 0.13 1.45 8.14 -2.38 -0.02 1.43 15 27 H 0.42 5.81 9.10 -74.06 -0.67 5.13 15 Total: -1.00 -85.73 242.52 3.59 -82.14 By element: Atomic # 1 Polarization: -1.23 SS G_CDS: 0.53 Total: -0.71 kcal Atomic # 6 Polarization: 16.27 SS G_CDS: 2.99 Total: 19.26 kcal Atomic # 7 Polarization: -83.87 SS G_CDS: -1.53 Total: -85.40 kcal Atomic # 8 Polarization: -65.39 SS G_CDS: -0.43 Total: -65.82 kcal Atomic # 14 Polarization: 48.49 SS G_CDS: 2.03 Total: 50.52 kcal Total: -85.73 3.59 -82.14 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004683023.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.082 kcal (2) G-P(sol) polarization free energy of solvation -85.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds