Wall clock time and date at job start Sun Mar 29 2020 21:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45199 * 109.47075 * 2 1 4 4 C 1.34754 * 117.00008 * 179.97438 * 3 2 1 5 5 O 1.21479 * 119.99641 * 0.02562 * 4 3 2 6 6 C 1.47473 * 120.00484 * 180.02562 * 4 3 2 7 7 N 1.29060 * 125.86223 * 0.02562 * 6 4 3 8 8 O 1.41389 * 112.88012 * 180.28303 * 7 6 4 9 9 C 1.44208 * 107.59323 * 342.51216 * 8 7 6 10 10 H 1.09002 * 110.97415 * 267.28290 * 9 8 7 11 11 C 1.50695 * 110.97251 * 143.51111 * 9 8 7 12 12 H 1.08007 * 120.00189 * 241.45582 * 11 9 8 13 13 C 1.37877 * 120.00396 * 61.45279 * 11 9 8 14 14 N 1.31514 * 119.99911 * 359.97438 * 13 11 9 15 15 Si 1.86795 * 120.00367 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.46917 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47523 * 119.99822 * 15 13 11 18 18 H 1.48507 * 109.47054 * 240.00262 * 15 13 11 19 19 C 1.51690 * 125.86764 * 179.72185 * 6 4 3 20 20 H 1.08998 * 109.47533 * 59.99688 * 1 2 3 21 21 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47153 * 300.00058 * 1 2 3 23 23 H 1.09002 * 109.47153 * 239.99942 * 2 1 3 24 24 H 1.09001 * 109.46832 * 120.00132 * 2 1 3 25 25 H 0.96999 * 120.00697 * 180.02562 * 14 13 11 26 26 H 1.09003 * 110.79061 * 313.68772 * 19 6 4 27 27 H 1.08996 * 110.79637 * 77.15919 * 19 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3499 1.5455 0.0005 5 8 4.0898 0.5821 0.0005 6 6 3.9136 2.9082 0.0011 7 7 3.2362 4.0067 0.0017 8 8 4.0564 5.1584 -0.0043 9 6 5.3789 4.7538 0.4041 10 1 5.5074 4.8691 1.4803 11 6 6.4345 5.5222 -0.3484 12 1 7.1355 4.9984 -0.9815 13 6 6.5054 6.8939 -0.2289 14 7 5.6515 7.5319 0.5415 15 14 7.8134 7.8465 -1.1622 16 1 8.6433 6.9026 -1.9531 17 1 7.1607 8.8180 -2.0761 18 1 8.6765 8.5760 -0.1987 19 6 5.3893 3.2596 0.0077 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3635 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 5.7010 8.4970 0.6254 26 1 5.9251 2.6656 0.7482 27 1 5.8230 3.1274 -0.9834 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000015107087.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:13 Heat of formation + Delta-G solvation = -88.403254 kcal Electronic energy + Delta-G solvation = -13809.277451 eV Core-core repulsion = 11147.746221 eV Total energy + Delta-G solvation = -2661.531230 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.083 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.78898 -40.51622 -37.85034 -35.15965 -33.85454 -32.51754 -31.69344 -27.37081 -26.31957 -23.71063 -23.13904 -21.30763 -19.22126 -18.72845 -17.97333 -17.67730 -16.75357 -16.36714 -16.12546 -15.23868 -14.94274 -14.40400 -14.05198 -13.68937 -13.63600 -13.33207 -13.00542 -12.86037 -12.55617 -12.53487 -12.20775 -11.99782 -11.82653 -11.59577 -11.48880 -10.83307 -10.30414 -8.30611 -6.54959 -0.29637 1.10511 1.42416 1.44039 1.57071 1.58853 2.21944 2.37824 2.99709 3.41922 3.72739 3.91766 4.01156 4.03646 4.26706 4.31705 4.45637 4.74583 4.86349 4.92394 5.01346 5.15135 5.30784 5.58368 5.80924 6.15763 6.46731 6.64486 7.22815 8.78695 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.077402 B = 0.006374 C = 0.006069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 361.660745 B = 4391.911386 C = 4612.867635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.049 3.951 3 O -0.349 6.349 4 C 0.560 3.440 5 O -0.498 6.498 6 C 0.035 3.965 7 N -0.256 5.256 8 O -0.189 6.189 9 C 0.166 3.834 10 H 0.029 0.971 11 C -0.557 4.557 12 H 0.084 0.916 13 C 0.022 3.978 14 N -0.901 5.901 15 Si 0.978 3.022 16 H -0.256 1.256 17 H -0.280 1.280 18 H -0.273 1.273 19 C -0.109 4.109 20 H 0.065 0.935 21 H 0.111 0.889 22 H 0.065 0.935 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.270 0.730 26 H 0.113 0.887 27 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.489 -12.895 -1.276 14.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.024 4.024 3 O -0.265 6.265 4 C 0.402 3.598 5 O -0.383 6.383 6 C -0.157 4.157 7 N 0.001 4.999 8 O -0.216 6.216 9 C 0.110 3.890 10 H 0.047 0.953 11 C -0.595 4.595 12 H 0.102 0.898 13 C -0.181 4.181 14 N -0.538 5.538 15 Si 0.801 3.199 16 H -0.180 1.180 17 H -0.206 1.206 18 H -0.198 1.198 19 C -0.148 4.148 20 H 0.084 0.916 21 H 0.129 0.871 22 H 0.084 0.916 23 H 0.100 0.900 24 H 0.100 0.900 25 H 0.079 0.921 26 H 0.131 0.869 27 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.427 -12.498 -1.245 14.109 hybrid contribution 1.307 0.442 -0.129 1.385 sum -5.120 -12.056 -1.374 13.170 Atomic orbital electron populations 1.21862 0.90195 1.04783 1.03611 1.23585 0.97308 0.77711 1.03753 1.86689 1.21557 1.35350 1.82886 1.19390 0.81512 0.86133 0.72788 1.90841 1.60986 1.40802 1.45697 1.25016 0.96805 0.91659 1.02204 1.78091 1.22846 0.95777 1.03234 1.91512 1.23124 1.20713 1.86242 1.21411 0.81697 0.89841 0.96066 0.95302 1.21397 1.14065 0.92953 1.31087 0.89766 1.26102 0.97873 0.98983 0.95181 1.70153 1.36679 1.09473 1.37452 0.85220 0.78138 0.78266 0.78316 1.17992 1.20577 1.19794 1.22875 0.89944 0.96421 1.05583 0.91558 0.87052 0.91588 0.89993 0.90008 0.92114 0.86876 0.87539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 10.29 71.98 0.74 -1.44 15 2 C 0.05 1.01 6.20 71.98 0.45 1.46 15 3 O -0.35 -10.68 10.22 -56.64 -0.58 -11.26 15 4 C 0.56 19.43 7.96 70.26 0.56 19.99 15 5 O -0.50 -17.40 16.75 19.90 0.33 -17.07 15 6 C 0.04 1.44 7.31 45.72 0.33 1.77 15 7 N -0.26 -12.13 12.51 -42.36 -0.53 -12.66 15 8 O -0.19 -10.60 11.79 -38.31 -0.45 -11.05 15 9 C 0.17 8.63 3.61 30.39 0.11 8.74 15 10 H 0.03 1.61 8.14 -2.39 -0.02 1.59 15 11 C -0.56 -30.27 8.82 25.60 0.23 -30.04 15 12 H 0.08 4.27 7.67 -2.91 -0.02 4.25 15 13 C 0.02 1.22 5.42 84.65 0.46 1.68 15 14 N -0.90 -53.16 12.96 21.45 0.28 -52.88 15 15 Si 0.98 42.25 29.54 68.60 2.03 44.27 15 16 H -0.26 -10.43 7.11 99.48 0.71 -9.72 15 17 H -0.28 -12.04 7.11 99.48 0.71 -11.33 15 18 H -0.27 -11.36 7.11 99.48 0.71 -10.66 15 19 C -0.11 -4.52 6.43 30.70 0.20 -4.33 15 20 H 0.07 1.03 8.14 -2.39 -0.02 1.01 15 21 H 0.11 0.97 8.14 -2.39 -0.02 0.95 15 22 H 0.07 1.02 8.14 -2.39 -0.02 1.00 15 23 H 0.08 1.55 8.14 -2.39 -0.02 1.53 15 24 H 0.08 1.54 8.14 -2.39 -0.02 1.52 15 25 H 0.27 14.85 8.31 -92.71 -0.77 14.07 15 26 H 0.11 4.09 8.14 -2.39 -0.02 4.07 15 27 H 0.11 4.22 7.80 -2.39 -0.02 4.20 15 Total: -1.00 -65.64 251.89 5.32 -60.31 By element: Atomic # 1 Polarization: 1.31 SS G_CDS: 1.17 Total: 2.49 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: 3.07 Total: -2.16 kcal Atomic # 7 Polarization: -65.29 SS G_CDS: -0.25 Total: -65.54 kcal Atomic # 8 Polarization: -38.68 SS G_CDS: -0.70 Total: -39.38 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.27 kcal Total: -65.64 5.32 -60.31 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015107087.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.089 kcal (2) G-P(sol) polarization free energy of solvation -65.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds