Wall clock time and date at job start Sun Mar 29 2020 21:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46903 * 111.00058 * 2 1 4 4 C 1.50696 * 109.46734 * 66.04932 * 3 2 1 5 5 H 1.08003 * 120.00355 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00450 * 180.02562 * 4 3 2 7 7 N 1.31521 * 119.99367 * 0.02562 * 6 4 3 8 8 Si 1.86792 * 120.00732 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.46897 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47416 * 119.99655 * 8 6 4 11 11 H 1.48504 * 109.47492 * 239.99905 * 8 6 4 12 12 C 1.46903 * 110.99938 * 236.04833 * 2 1 3 13 13 C 1.53114 * 109.52485 * 303.95244 * 12 2 1 14 14 C 1.53037 * 109.31211 * 182.42092 * 13 12 2 15 15 N 1.46929 * 109.47910 * 59.15772 * 14 13 12 16 16 C 1.46900 * 110.98461 * 174.18240 * 15 14 13 17 17 C 1.46850 * 111.22205 * 298.28247 * 15 14 13 18 18 C 1.53037 * 109.52028 * 61.74456 * 17 15 14 19 19 H 1.09007 * 109.46699 * 183.95222 * 1 2 3 20 20 H 1.09000 * 109.46947 * 303.94875 * 1 2 3 21 21 H 1.09000 * 109.47083 * 63.95071 * 1 2 3 22 22 H 1.09000 * 109.46962 * 186.04567 * 3 2 1 23 23 H 1.08998 * 109.47282 * 306.04830 * 3 2 1 24 24 H 0.97005 * 119.99826 * 180.02562 * 7 6 4 25 25 H 1.09006 * 109.57134 * 64.11344 * 12 2 1 26 26 H 1.09002 * 109.50377 * 302.38217 * 13 12 2 27 27 H 1.09003 * 109.50316 * 62.46212 * 13 12 2 28 28 H 1.08994 * 109.46612 * 179.21753 * 14 13 12 29 29 H 1.09007 * 109.46083 * 299.18512 * 14 13 12 30 30 H 1.09001 * 109.47132 * 184.23155 * 16 15 14 31 31 H 1.08998 * 109.47131 * 304.22754 * 16 15 14 32 32 H 1.08995 * 109.47646 * 64.22924 * 16 15 14 33 33 H 1.08997 * 109.46198 * 301.72747 * 17 15 14 34 34 H 1.08999 * 109.45191 * 181.75464 * 17 15 14 35 35 H 1.08997 * 109.50150 * 180.88044 * 18 17 15 36 36 H 1.08997 * 109.53578 * 60.77667 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0470 1.2985 5 1 1.0740 1.5114 2.0485 6 6 2.0267 3.3493 1.5287 7 7 2.7110 4.0022 0.6147 8 14 1.5818 4.1870 3.1378 9 1 0.8148 3.2442 3.9911 10 1 2.8232 4.5946 3.8436 11 1 0.7542 5.3880 2.8585 12 6 1.9954 -0.7660 -1.1376 13 6 1.4263 -2.1870 -1.1050 14 6 2.0243 -2.9983 -2.2567 15 7 3.4871 -3.0335 -2.1234 16 6 4.0862 -3.9174 -3.1322 17 6 4.0605 -1.6837 -2.1995 18 6 3.5224 -0.8338 -1.0462 19 1 -0.3633 -1.0253 0.0708 20 1 -0.3633 0.5739 0.8525 21 1 -0.3633 0.4513 -0.9233 22 1 3.0797 1.3444 -0.1082 23 1 1.5611 1.9274 -0.8309 24 1 2.9856 4.9183 0.7768 25 1 1.7076 -0.2796 -2.0698 26 1 1.6813 -2.6594 -0.1563 27 1 0.3423 -2.1475 -1.2121 28 1 1.6314 -4.0145 -2.2275 29 1 1.7574 -2.5330 -3.2056 30 1 5.1611 -3.9844 -2.9644 31 1 3.6437 -4.9105 -3.0538 32 1 3.8982 -3.5135 -4.1270 33 1 3.7840 -1.2246 -3.1487 34 1 5.1464 -1.7460 -2.1289 35 1 3.9360 0.1725 -1.1119 36 1 3.8103 -1.2843 -0.0963 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019441281.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:50 Heat of formation + Delta-G solvation = -16.853471 kcal Electronic energy + Delta-G solvation = -14759.898711 eV Core-core repulsion = 12470.854964 eV Total energy + Delta-G solvation = -2289.043747 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.36043 -37.72485 -34.83536 -32.85580 -32.01076 -29.21276 -27.69035 -26.14048 -24.13587 -23.56567 -21.95804 -20.52533 -18.57885 -17.04651 -16.69941 -16.08481 -15.99363 -15.57448 -15.42356 -14.94884 -14.43810 -14.05135 -13.89078 -13.49959 -13.33704 -13.05473 -12.81171 -12.61515 -12.43520 -12.26208 -12.14833 -12.04935 -11.90947 -11.53539 -11.15839 -11.01417 -10.58725 -9.27491 -9.00674 -8.20520 -6.30247 1.40560 1.41439 1.55275 2.40492 3.00739 3.11846 3.28084 3.83865 3.92935 4.18092 4.21763 4.37212 4.42706 4.55970 4.60674 4.63513 4.71239 4.72957 4.82865 4.87125 5.00324 5.04710 5.07671 5.09690 5.18530 5.28576 5.35635 5.43313 5.67047 6.07372 6.10295 6.19199 6.36438 6.67472 6.86578 7.39344 8.91031 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.056233 B = 0.006892 C = 0.006407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.809806 B = 4061.959710 C = 4368.922142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.544 5.544 3 C 0.204 3.796 4 C -0.522 4.522 5 H 0.062 0.938 6 C 0.000 4.000 7 N -0.936 5.936 8 Si 0.971 3.029 9 H -0.263 1.263 10 H -0.278 1.278 11 H -0.278 1.278 12 C 0.082 3.918 13 C -0.101 4.101 14 C 0.062 3.938 15 N -0.555 5.555 16 C 0.026 3.974 17 C 0.068 3.932 18 C -0.105 4.105 19 H 0.085 0.915 20 H 0.056 0.944 21 H 0.005 0.995 22 H 0.015 0.985 23 H -0.047 1.047 24 H 0.264 0.736 25 H 0.010 0.990 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.098 0.902 29 H 0.030 0.970 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.026 0.974 33 H 0.028 0.972 34 H 0.086 0.914 35 H 0.046 0.954 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.460 -13.938 -6.291 15.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.268 5.268 3 C 0.078 3.922 4 C -0.561 4.561 5 H 0.081 0.919 6 C -0.198 4.198 7 N -0.577 5.577 8 Si 0.795 3.205 9 H -0.187 1.187 10 H -0.203 1.203 11 H -0.204 1.204 12 C -0.026 4.026 13 C -0.139 4.139 14 C -0.066 4.066 15 N -0.281 5.281 16 C -0.122 4.122 17 C -0.061 4.061 18 C -0.143 4.143 19 H 0.103 0.897 20 H 0.075 0.925 21 H 0.024 0.976 22 H 0.033 0.967 23 H -0.030 1.030 24 H 0.073 0.927 25 H 0.028 0.972 26 H 0.090 0.910 27 H 0.095 0.905 28 H 0.116 0.884 29 H 0.048 0.952 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.045 0.955 33 H 0.046 0.954 34 H 0.105 0.895 35 H 0.064 0.936 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.121 -14.202 -5.436 15.207 hybrid contribution -0.465 1.839 -0.932 2.113 sum -0.586 -12.363 -6.368 13.919 Atomic orbital electron populations 1.22259 0.87784 1.01527 0.99419 1.62121 1.07996 1.15101 1.41611 1.19448 0.94425 0.83742 0.94564 1.21525 1.34673 0.97521 1.02349 0.91941 1.25934 0.95033 0.98042 1.00766 1.70104 1.39574 1.11857 1.36184 0.85310 0.78098 0.78152 0.78911 1.18691 1.20335 1.20395 1.21699 0.95410 0.94845 0.90667 1.21632 0.99751 0.92767 0.99758 1.22114 0.87248 1.00926 0.96303 1.61963 1.05445 1.10269 1.50378 1.22409 1.00698 0.97004 0.92067 1.21986 0.99790 0.88262 0.96024 1.21572 0.94585 0.98663 0.99487 0.89696 0.92519 0.97616 0.96703 1.02968 0.92719 0.97230 0.91034 0.90512 0.88377 0.95208 0.90714 0.89937 0.95547 0.95367 0.89541 0.93573 0.91627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.53 8.92 127.69 1.14 2.67 16 2 N -0.54 -24.63 4.62 -901.13 -4.17 -28.80 16 3 C 0.20 11.32 4.54 85.56 0.39 11.71 16 4 C -0.52 -30.49 8.46 25.60 0.22 -30.28 16 5 H 0.06 3.58 7.12 -2.91 -0.02 3.56 16 6 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 7 N -0.94 -57.56 13.29 21.45 0.28 -57.27 16 8 Si 0.97 45.12 29.54 68.60 2.03 47.15 16 9 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 12 C 0.08 3.12 2.01 44.99 0.09 3.21 16 13 C -0.10 -2.96 4.93 30.64 0.15 -2.81 16 14 C 0.06 1.50 5.47 86.31 0.47 1.97 16 15 N -0.56 -14.07 4.91 -922.37 -4.53 -18.60 16 16 C 0.03 0.48 9.59 127.69 1.22 1.70 16 17 C 0.07 1.94 5.47 86.33 0.47 2.41 16 18 C -0.10 -3.86 5.10 30.65 0.16 -3.70 16 19 H 0.08 2.74 6.30 -2.38 -0.02 2.72 16 20 H 0.06 2.43 6.76 -2.39 -0.02 2.41 16 21 H 0.01 0.21 8.14 -2.39 -0.02 0.19 16 22 H 0.01 0.88 5.89 -2.39 -0.01 0.87 16 23 H -0.05 -2.88 8.12 -2.39 -0.02 -2.90 16 24 H 0.26 15.17 8.31 -92.70 -0.77 14.40 16 25 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 26 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.08 2.03 6.50 -2.39 -0.02 2.02 16 28 H 0.10 1.88 8.09 -2.39 -0.02 1.86 16 29 H 0.03 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.08 1.26 8.09 -2.39 -0.02 1.24 16 32 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.09 2.22 8.12 -2.39 -0.02 2.20 16 35 H 0.05 1.93 6.35 -2.39 -0.02 1.91 16 36 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -65.54 278.41 -0.59 -66.14 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: 1.02 Total: 4.05 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: 4.77 Total: -12.66 kcal Atomic # 7 Polarization: -96.26 SS G_CDS: -8.41 Total: -104.67 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -65.54 -0.59 -66.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019441281.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.282 kcal (2) G-P(sol) polarization free energy of solvation -65.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds