Wall clock time and date at job start Sun Mar 29 2020 21:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46898 * 109.47006 * 180.02562 * 3 2 1 5 5 C 1.46954 * 111.00053 * 293.79820 * 4 3 2 6 6 C 1.53047 * 109.36866 * 176.81192 * 5 4 3 7 7 N 1.46963 * 109.36148 * 58.40296 * 6 5 4 8 8 C 1.46898 * 110.99883 * 176.81520 * 7 6 5 9 9 C 1.50695 * 109.47120 * 293.79859 * 8 7 6 10 10 H 1.07998 * 120.00336 * 0.02562 * 9 8 7 11 11 C 1.37882 * 120.00297 * 180.02562 * 9 8 7 12 12 N 1.31515 * 119.99838 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00331 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.47158 * 59.99961 * 13 11 9 15 15 H 1.48503 * 109.47163 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47144 * 300.00393 * 13 11 9 17 17 C 1.46954 * 110.87838 * 300.68140 * 7 6 5 18 18 C 1.46961 * 110.99713 * 170.00543 * 4 3 2 19 19 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 20 20 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 21 21 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 23 23 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 24 24 H 1.09001 * 109.46801 * 300.00272 * 3 2 1 25 25 H 1.09001 * 109.46998 * 59.99868 * 3 2 1 26 26 H 1.09003 * 109.49417 * 296.78345 * 5 4 3 27 27 H 1.09006 * 109.48599 * 56.84799 * 5 4 3 28 28 H 1.09001 * 109.48810 * 298.44375 * 6 5 4 29 29 H 1.08998 * 109.49435 * 178.36811 * 6 5 4 30 30 H 1.08998 * 109.47257 * 53.79687 * 8 7 6 31 31 H 1.09006 * 109.46878 * 173.79945 * 8 7 6 32 32 H 0.96998 * 120.00183 * 179.97438 * 12 11 9 33 33 H 1.09003 * 109.49417 * 299.35132 * 17 7 6 34 34 H 1.09003 * 109.50605 * 179.30079 * 17 7 6 35 35 H 1.09003 * 109.48406 * 303.14781 * 18 4 3 36 36 H 1.08993 * 109.49093 * 63.21631 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0361 0.8887 1.2544 6 6 5.5639 0.8325 1.1822 7 7 6.0904 2.1837 0.9439 8 6 7.5594 2.1837 0.9433 9 6 8.0623 1.8446 2.3228 10 1 7.3609 1.6482 3.1202 11 6 9.4180 1.7849 2.5671 12 7 10.2722 2.0245 1.5963 13 14 10.0414 1.3652 4.2772 14 1 9.5469 0.0206 4.6682 15 1 11.5264 1.3651 4.2766 16 1 9.5463 2.3756 5.2463 17 6 5.5633 2.7375 -0.3110 18 6 4.0355 2.7938 -0.2388 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8899 24 1 1.6766 1.9564 -0.8900 25 1 1.6766 1.9564 0.8900 26 1 3.7346 1.5239 2.0873 27 1 3.6419 -0.1167 1.4021 28 1 5.8654 0.1757 0.3662 29 1 5.9586 0.4491 2.1230 30 1 7.9225 1.4421 0.2318 31 1 7.9226 3.1707 0.6566 32 1 11.2260 1.9829 1.7681 33 1 5.8648 2.1023 -1.1440 34 1 5.9576 3.7429 -0.4592 35 1 3.6408 3.1771 -1.1797 36 1 3.7339 3.4506 0.5771 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019471191.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:35 Heat of formation + Delta-G solvation = -1.964999 kcal Electronic energy + Delta-G solvation = -14500.885555 eV Core-core repulsion = 12212.487420 eV Total energy + Delta-G solvation = -2288.398134 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.79334 -35.70624 -33.20133 -32.06937 -30.37369 -28.21671 -25.88771 -23.78716 -23.16152 -21.44095 -20.75983 -19.12204 -16.28524 -15.87543 -15.32709 -14.57828 -14.40317 -14.21653 -13.94628 -13.57930 -13.27356 -12.83126 -12.15965 -11.98800 -11.88240 -11.57282 -11.23784 -11.06523 -10.83419 -10.79418 -10.64306 -10.51980 -10.25092 -10.19615 -9.64948 -9.15917 -8.41170 -8.06571 -7.18637 -6.00180 -4.01639 3.34941 3.38802 3.41806 4.13169 4.44401 4.90353 4.97559 5.05988 5.26713 5.35229 5.42684 5.47399 5.61186 5.64336 5.71841 5.83924 5.90583 5.92617 5.95480 6.10671 6.14527 6.24763 6.30190 6.48558 6.64909 6.73359 7.24564 7.33278 7.39649 7.43524 7.82662 8.12541 8.24910 8.58883 9.05650 9.62392 11.10738 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.054461 B = 0.006273 C = 0.005815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.003218 B = 4462.611750 C = 4813.905803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C 0.056 3.944 4 N -0.542 5.542 5 C 0.056 3.944 6 C 0.067 3.933 7 N -0.539 5.539 8 C 0.193 3.807 9 C -0.508 4.508 10 H 0.062 0.938 11 C 0.055 3.945 12 N -0.899 5.899 13 Si 0.898 3.102 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.276 1.276 17 C 0.056 3.944 18 C 0.061 3.939 19 H 0.051 0.949 20 H 0.052 0.948 21 H 0.054 0.946 22 H 0.069 0.931 23 H 0.062 0.938 24 H 0.068 0.932 25 H 0.029 0.971 26 H 0.037 0.963 27 H 0.071 0.929 28 H 0.028 0.972 29 H 0.085 0.915 30 H -0.009 1.009 31 H 0.029 0.971 32 H 0.262 0.738 33 H 0.030 0.970 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.378 -1.976 -3.171 15.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.073 4.073 4 N -0.267 5.267 5 C -0.072 4.072 6 C -0.061 4.061 7 N -0.265 5.265 8 C 0.068 3.932 9 C -0.546 4.546 10 H 0.080 0.920 11 C -0.146 4.146 12 N -0.539 5.539 13 Si 0.726 3.274 14 H -0.203 1.203 15 H -0.214 1.214 16 H -0.202 1.202 17 C -0.073 4.073 18 C -0.067 4.067 19 H 0.070 0.930 20 H 0.071 0.929 21 H 0.073 0.927 22 H 0.087 0.913 23 H 0.081 0.919 24 H 0.087 0.913 25 H 0.048 0.952 26 H 0.055 0.945 27 H 0.090 0.910 28 H 0.046 0.954 29 H 0.104 0.896 30 H 0.009 0.991 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.048 0.952 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -15.162 -1.954 -3.210 15.620 hybrid contribution 0.489 -0.164 0.853 0.997 sum -14.672 -2.118 -2.356 15.011 Atomic orbital electron populations 1.21737 0.95960 1.01503 1.01570 1.21542 0.94962 0.96765 1.02728 1.22109 0.88003 0.96855 1.00286 1.62185 1.06534 1.22507 1.35440 1.22286 0.96265 0.98995 0.89652 1.21991 0.91770 0.90837 1.01539 1.62279 1.12007 1.20841 1.31339 1.19698 0.79840 0.96623 0.97004 1.21121 0.91274 1.46774 0.95447 0.92009 1.24989 0.96852 0.95583 0.97161 1.69951 1.02168 1.49832 1.31914 0.86561 0.77456 0.78931 0.84454 1.20282 1.21353 1.20200 1.22062 0.92939 0.99866 0.92404 1.22145 0.95819 0.88826 0.99902 0.92969 0.92850 0.92726 0.91274 0.91886 0.91312 0.95244 0.94514 0.91034 0.95376 0.89648 0.99079 0.95250 0.92884 0.95182 0.91078 0.91323 0.94446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 37.16 0.37 -0.95 16 2 C -0.12 -1.34 5.87 -26.73 -0.16 -1.50 16 3 C 0.06 0.69 4.96 -3.82 -0.02 0.67 16 4 N -0.54 -8.46 4.71 -234.46 -1.10 -9.56 16 5 C 0.06 0.93 5.41 -3.77 -0.02 0.91 16 6 C 0.07 1.38 5.43 -3.77 -0.02 1.36 16 7 N -0.54 -12.15 4.70 -235.91 -1.11 -13.26 16 8 C 0.19 5.19 4.72 -4.98 -0.02 5.16 16 9 C -0.51 -14.48 8.47 -34.44 -0.29 -14.77 16 10 H 0.06 1.74 7.13 -52.49 -0.37 1.36 16 11 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 12 N -0.90 -27.05 13.29 55.43 0.74 -26.32 16 13 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 C 0.06 1.08 5.61 -3.77 -0.02 1.06 16 18 C 0.06 0.98 5.61 -3.76 -0.02 0.95 16 19 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 20 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 21 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 22 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.06 0.72 6.49 -51.93 -0.34 0.38 16 24 H 0.07 0.79 8.03 -51.93 -0.42 0.37 16 25 H 0.03 0.37 8.12 -51.93 -0.42 -0.05 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 1.06 6.34 -51.93 -0.33 0.73 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.09 1.84 6.79 -51.93 -0.35 1.49 16 30 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 31 H 0.03 0.84 8.03 -51.93 -0.42 0.42 16 32 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 1.32 8.07 -51.93 -0.42 0.90 16 35 H 0.07 0.94 8.07 -51.93 -0.42 0.52 16 36 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 283.63 15.07 4.27 4.27 Total: -1.00 -29.93 283.63 -8.95 -38.89 By element: Atomic # 1 Polarization: 1.21 SS G_CDS: -6.43 Total: -5.21 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -0.30 Total: -5.61 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: -1.48 Total: -49.14 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.93 -8.95 -38.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019471191.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.921 kcal (2) G-P(sol) polarization free energy of solvation -29.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds