Wall clock time and date at job start Sun Mar 29 2020 21:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46898 * 109.47006 * 180.02562 * 3 2 1 5 5 C 1.46954 * 111.00053 * 293.79820 * 4 3 2 6 6 C 1.53047 * 109.36866 * 176.81192 * 5 4 3 7 7 N 1.46963 * 109.36148 * 58.40296 * 6 5 4 8 8 C 1.46898 * 110.99883 * 176.81520 * 7 6 5 9 9 C 1.50695 * 109.47120 * 293.79859 * 8 7 6 10 10 H 1.07998 * 120.00336 * 0.02562 * 9 8 7 11 11 C 1.37882 * 120.00297 * 180.02562 * 9 8 7 12 12 N 1.31515 * 119.99838 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00331 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.47158 * 59.99961 * 13 11 9 15 15 H 1.48503 * 109.47163 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47144 * 300.00393 * 13 11 9 17 17 C 1.46954 * 110.87838 * 300.68140 * 7 6 5 18 18 C 1.46961 * 110.99713 * 170.00543 * 4 3 2 19 19 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 20 20 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 21 21 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 23 23 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 24 24 H 1.09001 * 109.46801 * 300.00272 * 3 2 1 25 25 H 1.09001 * 109.46998 * 59.99868 * 3 2 1 26 26 H 1.09003 * 109.49417 * 296.78345 * 5 4 3 27 27 H 1.09006 * 109.48599 * 56.84799 * 5 4 3 28 28 H 1.09001 * 109.48810 * 298.44375 * 6 5 4 29 29 H 1.08998 * 109.49435 * 178.36811 * 6 5 4 30 30 H 1.08998 * 109.47257 * 53.79687 * 8 7 6 31 31 H 1.09006 * 109.46878 * 173.79945 * 8 7 6 32 32 H 0.96998 * 120.00183 * 179.97438 * 12 11 9 33 33 H 1.09003 * 109.49417 * 299.35132 * 17 7 6 34 34 H 1.09003 * 109.50605 * 179.30079 * 17 7 6 35 35 H 1.09003 * 109.48406 * 303.14781 * 18 4 3 36 36 H 1.08993 * 109.49093 * 63.21631 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0361 0.8887 1.2544 6 6 5.5639 0.8325 1.1822 7 7 6.0904 2.1837 0.9439 8 6 7.5594 2.1837 0.9433 9 6 8.0623 1.8446 2.3228 10 1 7.3609 1.6482 3.1202 11 6 9.4180 1.7849 2.5671 12 7 10.2722 2.0245 1.5963 13 14 10.0414 1.3652 4.2772 14 1 9.5469 0.0206 4.6682 15 1 11.5264 1.3651 4.2766 16 1 9.5463 2.3756 5.2463 17 6 5.5633 2.7375 -0.3110 18 6 4.0355 2.7938 -0.2388 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8899 24 1 1.6766 1.9564 -0.8900 25 1 1.6766 1.9564 0.8900 26 1 3.7346 1.5239 2.0873 27 1 3.6419 -0.1167 1.4021 28 1 5.8654 0.1757 0.3662 29 1 5.9586 0.4491 2.1230 30 1 7.9225 1.4421 0.2318 31 1 7.9226 3.1707 0.6566 32 1 11.2260 1.9829 1.7681 33 1 5.8648 2.1023 -1.1440 34 1 5.9576 3.7429 -0.4592 35 1 3.6408 3.1771 -1.1797 36 1 3.7339 3.4506 0.5771 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019471191.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:34 Heat of formation + Delta-G solvation = -22.890366 kcal Electronic energy + Delta-G solvation = -14501.792947 eV Core-core repulsion = 12212.487420 eV Total energy + Delta-G solvation = -2289.305526 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.22386 -37.17037 -34.90576 -33.61631 -31.84538 -29.92724 -27.48152 -25.19455 -24.64024 -23.25923 -21.78972 -20.64099 -18.49216 -17.32555 -16.45538 -16.38349 -15.85524 -15.58445 -15.41061 -15.14582 -14.79470 -14.09118 -13.79551 -13.42124 -13.25094 -12.89035 -12.69624 -12.60838 -12.39582 -12.29907 -12.18368 -12.03917 -11.80030 -11.59116 -11.23094 -11.16482 -10.62071 -9.31774 -9.04677 -8.21339 -6.32285 1.40789 1.44439 1.52452 2.39949 2.94254 3.10641 3.28832 3.95576 3.99786 4.16664 4.20957 4.36187 4.42536 4.47598 4.52720 4.63976 4.71401 4.82048 4.84408 4.92614 4.97925 5.01804 5.06888 5.20545 5.23933 5.27048 5.34084 5.45792 5.62463 6.00562 6.08491 6.15002 6.34586 6.60894 6.83094 7.37566 8.89925 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.054461 B = 0.006273 C = 0.005815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.003218 B = 4462.611750 C = 4813.905803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.119 4.119 3 C 0.057 3.943 4 N -0.552 5.552 5 C 0.069 3.931 6 C 0.069 3.931 7 N -0.546 5.546 8 C 0.208 3.792 9 C -0.526 4.526 10 H 0.063 0.937 11 C 0.002 3.998 12 N -0.935 5.935 13 Si 0.972 3.028 14 H -0.266 1.266 15 H -0.282 1.282 16 H -0.268 1.268 17 C 0.053 3.947 18 C 0.070 3.930 19 H 0.055 0.945 20 H 0.060 0.940 21 H 0.062 0.938 22 H 0.062 0.938 23 H 0.057 0.943 24 H 0.084 0.916 25 H 0.033 0.967 26 H 0.034 0.966 27 H 0.094 0.906 28 H 0.014 0.986 29 H 0.068 0.932 30 H -0.041 1.041 31 H 0.004 0.996 32 H 0.265 0.735 33 H 0.020 0.980 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.199 -2.268 -2.428 17.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.157 4.157 3 C -0.070 4.070 4 N -0.277 5.277 5 C -0.059 4.059 6 C -0.060 4.060 7 N -0.271 5.271 8 C 0.082 3.918 9 C -0.564 4.564 10 H 0.081 0.919 11 C -0.196 4.196 12 N -0.576 5.576 13 Si 0.796 3.204 14 H -0.191 1.191 15 H -0.207 1.207 16 H -0.193 1.193 17 C -0.075 4.075 18 C -0.058 4.058 19 H 0.074 0.926 20 H 0.079 0.921 21 H 0.081 0.919 22 H 0.081 0.919 23 H 0.076 0.924 24 H 0.102 0.898 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.112 0.888 28 H 0.033 0.967 29 H 0.086 0.914 30 H -0.023 1.023 31 H 0.022 0.978 32 H 0.074 0.926 33 H 0.038 0.962 34 H 0.090 0.910 35 H 0.116 0.884 36 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -17.020 -2.248 -2.475 17.345 hybrid contribution 1.035 -0.064 0.547 1.172 sum -15.985 -2.312 -1.928 16.266 Atomic orbital electron populations 1.21696 0.94147 1.02297 1.02148 1.21521 0.96487 0.95563 1.02166 1.22208 0.85544 0.98121 1.01167 1.62188 1.08766 1.22163 1.34595 1.22123 0.93109 1.00436 0.90265 1.21982 0.94661 0.89334 1.00005 1.62225 1.09256 1.22233 1.33411 1.19357 0.82780 0.93968 0.95696 1.21411 0.91855 1.47114 0.96018 0.91919 1.25949 0.96962 0.95072 1.01657 1.70086 1.02592 1.50542 1.34344 0.85397 0.76918 0.79150 0.78915 1.19123 1.20725 1.19270 1.22176 0.95601 0.99322 0.90440 1.22076 0.92975 0.89287 1.01455 0.92591 0.92071 0.91893 0.91876 0.92430 0.89808 0.94866 0.94777 0.88832 0.96748 0.91354 1.02339 0.97799 0.92609 0.96157 0.91019 0.88357 0.94507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.91 71.98 0.71 -1.41 16 2 C -0.12 -2.30 5.87 30.60 0.18 -2.12 16 3 C 0.06 1.25 4.96 86.31 0.43 1.68 16 4 N -0.55 -16.12 4.71 -895.70 -4.22 -20.34 16 5 C 0.07 2.20 5.41 86.31 0.47 2.67 16 6 C 0.07 2.84 5.43 86.31 0.47 3.31 16 7 N -0.55 -25.14 4.70 -900.28 -4.23 -29.37 16 8 C 0.21 11.65 4.72 85.56 0.40 12.06 16 9 C -0.53 -30.65 8.47 25.60 0.22 -30.44 16 10 H 0.06 3.57 7.13 -2.91 -0.02 3.55 16 11 C 0.00 0.09 5.46 84.66 0.46 0.56 16 12 N -0.94 -57.44 13.29 21.45 0.28 -57.16 16 13 Si 0.97 44.81 29.54 68.60 2.03 46.84 16 14 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 15 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 16 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 17 C 0.05 2.04 5.61 86.31 0.48 2.53 16 18 C 0.07 2.11 5.61 86.31 0.48 2.59 16 19 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 20 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 21 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 22 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.06 1.17 6.49 -2.39 -0.02 1.15 16 24 H 0.08 1.62 8.03 -2.39 -0.02 1.60 16 25 H 0.03 0.73 8.12 -2.39 -0.02 0.71 16 26 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.09 2.59 6.34 -2.38 -0.02 2.57 16 28 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.07 3.01 6.79 -2.39 -0.02 3.00 16 30 H -0.04 -2.51 8.12 -2.39 -0.02 -2.53 16 31 H 0.00 0.23 8.03 -2.38 -0.02 0.21 16 32 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 33 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.07 2.69 8.07 -2.39 -0.02 2.67 16 35 H 0.10 2.40 8.07 -2.39 -0.02 2.38 16 36 H 0.04 1.12 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -64.91 283.63 -0.82 -65.73 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: 1.01 Total: 2.88 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: 4.31 Total: -8.58 kcal Atomic # 7 Polarization: -98.70 SS G_CDS: -8.17 Total: -106.87 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -64.91 -0.82 -65.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019471191.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.843 kcal (2) G-P(sol) polarization free energy of solvation -64.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds