Wall clock time and date at job start Sun Mar 29 2020 21:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46896 * 109.47354 * 2 1 4 4 C 1.46948 * 111.00183 * 190.00031 * 3 2 1 5 5 C 1.53049 * 109.36764 * 183.19149 * 4 3 2 6 6 N 1.46961 * 109.36177 * 301.59566 * 5 4 3 7 7 C 1.46896 * 111.00124 * 183.18463 * 6 5 4 8 8 C 1.52996 * 109.47256 * 170.00033 * 7 6 5 9 9 C 1.50702 * 109.47159 * 180.02562 * 8 7 6 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99942 * 179.72211 * 9 8 7 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 8 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 8 14 14 H 1.48496 * 109.47341 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.46983 * 120.00379 * 13 11 9 16 16 H 1.48503 * 109.47491 * 240.00192 * 13 11 9 17 17 C 1.46956 * 110.87704 * 59.32220 * 6 5 4 18 18 C 1.46963 * 111.00029 * 313.80211 * 3 2 1 19 19 H 1.08999 * 109.47372 * 300.00278 * 1 2 3 20 20 H 1.09003 * 109.46832 * 59.99830 * 1 2 3 21 21 H 1.08994 * 109.47360 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46930 * 239.99781 * 2 1 3 23 23 H 1.09003 * 109.46832 * 120.00170 * 2 1 3 24 24 H 1.08999 * 109.48998 * 63.22220 * 4 3 2 25 25 H 1.09002 * 109.48626 * 303.15745 * 4 3 2 26 26 H 1.09001 * 109.49268 * 181.63226 * 5 4 3 27 27 H 1.09000 * 109.49067 * 61.56179 * 5 4 3 28 28 H 1.09004 * 109.46774 * 50.00232 * 7 6 5 29 29 H 1.09000 * 109.47723 * 290.00621 * 7 6 5 30 30 H 1.09004 * 109.47066 * 60.00378 * 8 7 6 31 31 H 1.08994 * 109.47405 * 300.00209 * 8 7 6 32 32 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 33 33 H 1.08999 * 109.49195 * 60.64478 * 17 6 5 34 34 H 1.09002 * 109.48564 * 180.71036 * 17 6 5 35 35 H 1.09000 * 109.48524 * 296.77653 * 18 3 2 36 36 H 1.09001 * 109.48867 * 56.84120 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4690 1.4311 -0.2382 5 6 3.9517 2.8809 -0.1516 6 7 3.2321 3.6940 -1.1419 7 6 3.7217 5.0789 -1.1419 8 6 3.1352 5.8273 -2.3405 9 6 3.6381 7.2479 -2.3408 10 1 4.3092 7.5834 -1.5640 11 6 3.2463 8.1177 -3.3364 12 7 2.4293 7.7091 -4.2825 13 14 3.8756 9.8765 -3.3410 14 1 4.7746 10.0836 -2.1773 15 1 4.6261 10.1303 -4.5971 16 1 2.7270 10.8136 -3.2527 17 6 1.7827 3.6479 -0.9036 18 6 1.3000 2.1981 -0.9902 19 1 -0.3634 0.5139 0.8899 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 3.6875 1.0337 -1.2294 25 1 3.9806 0.8319 0.5150 26 1 5.0216 2.9209 -0.3567 27 1 3.7579 3.2696 0.8481 28 1 4.8096 5.0796 -1.2099 29 1 3.4151 5.5728 -0.2198 30 1 2.0473 5.8266 -2.2725 31 1 3.4419 5.3336 -3.2626 32 1 2.1534 8.3211 -4.9827 33 1 1.5642 4.0453 0.0875 34 1 1.2711 4.2471 -1.6569 35 1 1.4938 1.8093 -1.9899 36 1 0.2302 2.1580 -0.7852 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019505213.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:07 Heat of formation + Delta-G solvation = 1.549094 kcal Electronic energy + Delta-G solvation = -14465.434223 eV Core-core repulsion = 12177.188471 eV Total energy + Delta-G solvation = -2288.245752 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.09376 -35.90200 -33.10371 -31.38737 -30.42996 -29.10496 -25.98369 -23.77906 -23.42086 -21.47289 -20.25813 -19.33969 -16.59119 -15.87154 -15.09644 -14.65220 -14.63443 -14.48673 -14.00256 -13.88855 -13.24761 -12.54559 -12.35640 -12.12847 -11.86235 -11.52453 -11.18239 -11.10919 -10.96720 -10.92948 -10.66400 -10.45836 -10.32660 -9.79468 -9.31252 -9.07964 -8.31541 -8.23230 -7.66570 -5.97903 -3.99991 3.32536 3.39855 3.44077 3.99243 4.40947 4.58841 4.95587 5.08593 5.16715 5.37458 5.38102 5.40564 5.54769 5.63024 5.67063 5.70338 5.86940 5.90646 5.99571 6.08580 6.19286 6.23957 6.36345 6.46671 6.55080 7.00073 7.13114 7.16714 7.55827 7.61952 7.83277 7.92710 8.10810 8.46110 9.07521 9.63606 11.13622 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.064768 B = 0.005798 C = 0.005475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.205452 B = 4828.297863 C = 5112.959193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.051 3.949 3 N -0.542 5.542 4 C 0.060 3.940 5 C 0.056 3.944 6 N -0.541 5.541 7 C 0.063 3.937 8 C 0.028 3.972 9 C -0.521 4.521 10 H 0.054 0.946 11 C 0.058 3.942 12 N -0.894 5.894 13 Si 0.892 3.108 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.284 1.284 17 C 0.057 3.943 18 C 0.053 3.947 19 H 0.062 0.938 20 H 0.060 0.940 21 H 0.057 0.943 22 H 0.031 0.969 23 H 0.071 0.929 24 H 0.040 0.960 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.034 0.966 28 H 0.060 0.940 29 H 0.020 0.980 30 H 0.017 0.983 31 H 0.024 0.976 32 H 0.260 0.740 33 H 0.034 0.966 34 H 0.089 0.911 35 H 0.040 0.960 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.655 -13.472 7.895 15.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.077 4.077 3 N -0.268 5.268 4 C -0.069 4.069 5 C -0.073 4.073 6 N -0.266 5.266 7 C -0.063 4.063 8 C -0.010 4.010 9 C -0.559 4.559 10 H 0.073 0.927 11 C -0.143 4.143 12 N -0.533 5.533 13 Si 0.720 3.280 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.210 1.210 17 C -0.072 4.072 18 C -0.075 4.075 19 H 0.081 0.919 20 H 0.079 0.921 21 H 0.076 0.924 22 H 0.049 0.951 23 H 0.089 0.911 24 H 0.058 0.942 25 H 0.090 0.910 26 H 0.093 0.907 27 H 0.053 0.947 28 H 0.078 0.922 29 H 0.038 0.962 30 H 0.035 0.965 31 H 0.042 0.958 32 H 0.069 0.931 33 H 0.052 0.948 34 H 0.108 0.892 35 H 0.058 0.942 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.739 -13.413 7.740 15.584 hybrid contribution 0.342 0.988 -0.088 1.049 sum -1.396 -12.425 7.653 14.660 Atomic orbital electron populations 1.21932 0.95166 1.01584 1.02687 1.22054 0.95700 0.89536 1.00385 1.62265 1.04306 1.10279 1.49951 1.22140 0.87852 0.97126 0.99740 1.22109 0.98254 0.92587 0.94333 1.62265 1.03496 1.13153 1.47695 1.22317 0.99195 0.85027 0.99777 1.19098 0.96020 0.93578 0.92277 1.21246 1.28474 0.96010 1.10220 0.92742 1.24994 0.95176 0.98648 0.95505 1.69987 1.34156 1.35454 1.13722 0.86543 0.78681 0.84899 0.77911 1.19767 1.21004 1.21037 1.22174 0.89384 0.95186 1.00419 1.22306 0.98111 0.93616 0.93421 0.91852 0.92136 0.92448 0.95116 0.91078 0.94162 0.90990 0.90743 0.94741 0.92158 0.96169 0.96498 0.95802 0.93081 0.94777 0.89234 0.94163 0.90174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.18 37.16 0.34 -1.18 16 2 C 0.05 0.57 6.00 -3.82 -0.02 0.55 16 3 N -0.54 -7.52 4.86 -234.47 -1.14 -8.66 16 4 C 0.06 0.82 5.58 -3.77 -0.02 0.80 16 5 C 0.06 0.89 5.61 -3.77 -0.02 0.87 16 6 N -0.54 -10.36 4.71 -234.47 -1.10 -11.46 16 7 C 0.06 1.39 4.90 -3.83 -0.02 1.37 16 8 C 0.03 0.73 4.91 -27.88 -0.14 0.60 16 9 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 10 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 11 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 12 N -0.89 -27.14 13.29 55.43 0.74 -26.41 16 13 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 14 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 15 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 16 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 17 C 0.06 1.02 5.41 -3.77 -0.02 1.00 16 18 C 0.05 0.80 4.93 -3.76 -0.02 0.78 16 19 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 20 H 0.06 0.61 6.26 -51.93 -0.33 0.29 16 21 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 22 H 0.03 0.34 8.08 -51.93 -0.42 -0.08 16 23 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.07 1.11 8.07 -51.93 -0.42 0.69 16 27 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.06 1.29 8.03 -51.93 -0.42 0.88 16 29 H 0.02 0.44 8.12 -51.93 -0.42 0.02 16 30 H 0.02 0.47 6.49 -51.93 -0.34 0.13 16 31 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.09 1.76 6.34 -51.93 -0.33 1.43 16 35 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 1.06 5.99 -51.93 -0.31 0.75 16 LS Contribution 281.49 15.07 4.24 4.24 Total: -1.00 -30.33 281.49 -8.94 -39.27 By element: Atomic # 1 Polarization: 1.45 SS G_CDS: -6.33 Total: -4.87 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -0.33 Total: -8.92 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: -1.51 Total: -46.53 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.33 -8.94 -39.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019505213.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.817 kcal (2) G-P(sol) polarization free energy of solvation -30.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds