Wall clock time and date at job start Sun Mar 29 2020 21:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46896 * 109.47354 * 2 1 4 4 C 1.46948 * 111.00183 * 190.00031 * 3 2 1 5 5 C 1.53049 * 109.36764 * 183.19149 * 4 3 2 6 6 N 1.46961 * 109.36177 * 301.59566 * 5 4 3 7 7 C 1.46896 * 111.00124 * 183.18463 * 6 5 4 8 8 C 1.52996 * 109.47256 * 170.00033 * 7 6 5 9 9 C 1.50702 * 109.47159 * 180.02562 * 8 7 6 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99942 * 179.72211 * 9 8 7 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 8 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 8 14 14 H 1.48496 * 109.47341 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.46983 * 120.00379 * 13 11 9 16 16 H 1.48503 * 109.47491 * 240.00192 * 13 11 9 17 17 C 1.46956 * 110.87704 * 59.32220 * 6 5 4 18 18 C 1.46963 * 111.00029 * 313.80211 * 3 2 1 19 19 H 1.08999 * 109.47372 * 300.00278 * 1 2 3 20 20 H 1.09003 * 109.46832 * 59.99830 * 1 2 3 21 21 H 1.08994 * 109.47360 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46930 * 239.99781 * 2 1 3 23 23 H 1.09003 * 109.46832 * 120.00170 * 2 1 3 24 24 H 1.08999 * 109.48998 * 63.22220 * 4 3 2 25 25 H 1.09002 * 109.48626 * 303.15745 * 4 3 2 26 26 H 1.09001 * 109.49268 * 181.63226 * 5 4 3 27 27 H 1.09000 * 109.49067 * 61.56179 * 5 4 3 28 28 H 1.09004 * 109.46774 * 50.00232 * 7 6 5 29 29 H 1.09000 * 109.47723 * 290.00621 * 7 6 5 30 30 H 1.09004 * 109.47066 * 60.00378 * 8 7 6 31 31 H 1.08994 * 109.47405 * 300.00209 * 8 7 6 32 32 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 33 33 H 1.08999 * 109.49195 * 60.64478 * 17 6 5 34 34 H 1.09002 * 109.48564 * 180.71036 * 17 6 5 35 35 H 1.09000 * 109.48524 * 296.77653 * 18 3 2 36 36 H 1.09001 * 109.48867 * 56.84120 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4690 1.4311 -0.2382 5 6 3.9517 2.8809 -0.1516 6 7 3.2321 3.6940 -1.1419 7 6 3.7217 5.0789 -1.1419 8 6 3.1352 5.8273 -2.3405 9 6 3.6381 7.2479 -2.3408 10 1 4.3092 7.5834 -1.5640 11 6 3.2463 8.1177 -3.3364 12 7 2.4293 7.7091 -4.2825 13 14 3.8756 9.8765 -3.3410 14 1 4.7746 10.0836 -2.1773 15 1 4.6261 10.1303 -4.5971 16 1 2.7270 10.8136 -3.2527 17 6 1.7827 3.6479 -0.9036 18 6 1.3000 2.1981 -0.9902 19 1 -0.3634 0.5139 0.8899 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 3.6875 1.0337 -1.2294 25 1 3.9806 0.8319 0.5150 26 1 5.0216 2.9209 -0.3567 27 1 3.7579 3.2696 0.8481 28 1 4.8096 5.0796 -1.2099 29 1 3.4151 5.5728 -0.2198 30 1 2.0473 5.8266 -2.2725 31 1 3.4419 5.3336 -3.2626 32 1 2.1534 8.3211 -4.9827 33 1 1.5642 4.0453 0.0875 34 1 1.2711 4.2471 -1.6569 35 1 1.4938 1.8093 -1.9899 36 1 0.2302 2.1580 -0.7852 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019505213.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:07 Heat of formation + Delta-G solvation = -19.817159 kcal Electronic energy + Delta-G solvation = -14466.360734 eV Core-core repulsion = 12177.188471 eV Total energy + Delta-G solvation = -2289.172262 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.36308 -37.29806 -35.14003 -32.78781 -31.77963 -30.66749 -27.53179 -25.46835 -24.81812 -22.58225 -22.01162 -20.65424 -18.62653 -17.24034 -16.57277 -16.27126 -15.95585 -15.73077 -15.42792 -15.32801 -14.68533 -14.21452 -13.95386 -13.42713 -13.17926 -12.90306 -12.82911 -12.58838 -12.41921 -12.24682 -12.13630 -11.88405 -11.82648 -11.55109 -11.23271 -11.15217 -10.54712 -9.35971 -9.17515 -8.20576 -6.32012 1.40372 1.40826 1.54338 2.40268 2.93370 3.06121 3.12996 3.91744 4.02614 4.11088 4.24489 4.28929 4.41115 4.47768 4.52766 4.59761 4.62791 4.71297 4.81507 4.89595 4.93268 5.00010 5.03560 5.12922 5.15749 5.32142 5.44473 5.64382 5.76635 6.01764 6.03974 6.17488 6.30354 6.33243 6.85031 7.37236 8.91979 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.064768 B = 0.005798 C = 0.005475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.205452 B = 4828.297863 C = 5112.959193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.050 3.950 3 N -0.550 5.550 4 C 0.064 3.936 5 C 0.055 3.945 6 N -0.554 5.554 7 C 0.080 3.920 8 C 0.037 3.963 9 C -0.545 4.545 10 H 0.060 0.940 11 C 0.002 3.998 12 N -0.932 5.932 13 Si 0.968 3.032 14 H -0.262 1.262 15 H -0.277 1.277 16 H -0.277 1.277 17 C 0.058 3.942 18 C 0.064 3.936 19 H 0.060 0.940 20 H 0.052 0.948 21 H 0.077 0.923 22 H 0.032 0.968 23 H 0.087 0.913 24 H 0.034 0.966 25 H 0.101 0.899 26 H 0.084 0.916 27 H 0.034 0.966 28 H 0.065 0.935 29 H 0.018 0.982 30 H -0.006 1.006 31 H -0.009 1.009 32 H 0.264 0.736 33 H 0.031 0.969 34 H 0.061 0.939 35 H 0.030 0.970 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.122 -14.043 9.093 16.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.077 4.077 3 N -0.276 5.276 4 C -0.064 4.064 5 C -0.073 4.073 6 N -0.279 5.279 7 C -0.048 4.048 8 C -0.001 4.001 9 C -0.583 4.583 10 H 0.078 0.922 11 C -0.196 4.196 12 N -0.572 5.572 13 Si 0.792 3.208 14 H -0.186 1.186 15 H -0.203 1.203 16 H -0.203 1.203 17 C -0.070 4.070 18 C -0.064 4.064 19 H 0.079 0.921 20 H 0.071 0.929 21 H 0.096 0.904 22 H 0.051 0.949 23 H 0.106 0.894 24 H 0.052 0.948 25 H 0.119 0.881 26 H 0.103 0.897 27 H 0.053 0.947 28 H 0.083 0.917 29 H 0.037 0.963 30 H 0.012 0.988 31 H 0.009 0.991 32 H 0.073 0.927 33 H 0.049 0.951 34 H 0.080 0.920 35 H 0.048 0.952 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.203 -14.011 8.955 16.672 hybrid contribution 0.153 1.103 -0.459 1.205 sum -1.050 -12.907 8.497 15.489 Atomic orbital electron populations 1.21913 0.94218 1.02802 1.02170 1.22164 0.96536 0.87774 1.01228 1.62290 1.04260 1.11913 1.49120 1.22143 0.88139 0.95718 1.00422 1.22222 0.98543 0.93331 0.93215 1.62197 1.04400 1.11670 1.49623 1.21962 0.99032 0.86446 0.97311 1.18916 0.94714 0.93550 0.92880 1.21657 1.28823 0.97167 1.10657 0.92186 1.25970 0.95155 1.03611 0.94886 1.70121 1.35295 1.37356 1.14471 0.85361 0.78314 0.78739 0.78383 1.18551 1.20284 1.20291 1.22122 0.88650 0.97118 0.99124 1.22167 0.99163 0.91684 0.93407 0.92092 0.92872 0.90435 0.94927 0.89435 0.94784 0.88099 0.89730 0.94725 0.91670 0.96343 0.98753 0.99066 0.92731 0.95093 0.92027 0.95198 0.88479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.18 71.98 0.66 -1.97 16 2 C 0.05 0.98 6.00 86.31 0.52 1.50 16 3 N -0.55 -14.18 4.86 -895.72 -4.35 -18.53 16 4 C 0.06 1.62 5.58 86.31 0.48 2.10 16 5 C 0.05 1.67 5.61 86.31 0.48 2.15 16 6 N -0.55 -21.35 4.71 -895.72 -4.22 -25.57 16 7 C 0.08 3.55 4.90 86.30 0.42 3.98 16 8 C 0.04 2.03 4.91 29.85 0.15 2.18 16 9 C -0.54 -31.80 9.11 25.60 0.23 -31.56 16 10 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 11 C 0.00 0.10 5.46 84.66 0.46 0.56 16 12 N -0.93 -57.77 13.29 21.45 0.28 -57.49 16 13 Si 0.97 44.82 29.54 68.60 2.03 46.85 16 14 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 15 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 16 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 17 C 0.06 2.13 5.41 86.31 0.47 2.60 16 18 C 0.06 1.87 4.93 86.31 0.43 2.30 16 19 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 20 H 0.05 0.98 6.26 -2.39 -0.01 0.97 16 21 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 22 H 0.03 0.64 8.08 -2.38 -0.02 0.62 16 23 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.08 2.38 8.07 -2.39 -0.02 2.36 16 27 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.06 2.80 8.03 -2.38 -0.02 2.78 16 29 H 0.02 0.82 8.12 -2.39 -0.02 0.80 16 30 H -0.01 -0.34 6.49 -2.38 -0.02 -0.36 16 31 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 32 H 0.26 15.25 8.31 -92.70 -0.77 14.48 16 33 H 0.03 1.13 8.14 -2.39 -0.02 1.12 16 34 H 0.06 2.56 6.34 -2.39 -0.02 2.54 16 35 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.10 2.50 5.99 -2.39 -0.01 2.48 16 Total: -1.00 -65.42 281.49 -0.94 -66.37 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: 1.02 Total: 4.55 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: 4.30 Total: -16.18 kcal Atomic # 7 Polarization: -93.30 SS G_CDS: -8.29 Total: -101.59 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -65.42 -0.94 -66.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019505213.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.550 kcal (2) G-P(sol) polarization free energy of solvation -65.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds