Wall clock time and date at job start Sun Mar 29 2020 21:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36758 * 127.14130 * 2 1 4 4 N 1.30303 * 107.31836 * 180.02562 * 3 2 1 5 5 N 1.28519 * 110.07581 * 359.76310 * 4 3 2 6 6 C 1.31288 * 109.86183 * 0.39605 * 5 4 3 7 7 S 1.76193 * 126.48738 * 179.88307 * 6 5 4 8 8 C 1.81002 * 100.00049 * 359.68248 * 7 6 5 9 9 C 1.53000 * 109.47004 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.46912 * 179.97438 * 9 8 7 11 11 H 1.08001 * 119.99776 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00001 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00114 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99955 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46999 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.46979 * 120.00420 * 14 12 10 17 17 H 1.48498 * 109.46942 * 240.00334 * 14 12 10 18 18 H 1.09006 * 109.46808 * 269.99482 * 1 2 3 19 19 H 1.08995 * 109.47690 * 29.99195 * 1 2 3 20 20 H 1.09001 * 109.47236 * 150.00216 * 1 2 3 21 21 H 1.07999 * 126.34145 * 0.02562 * 3 2 1 22 22 H 1.09002 * 109.47115 * 60.00094 * 8 7 6 23 23 H 1.09001 * 109.46925 * 300.00251 * 8 7 6 24 24 H 1.09001 * 109.47194 * 299.99731 * 9 8 7 25 25 H 1.08992 * 109.47399 * 59.99903 * 9 8 7 26 26 H 0.97000 * 120.00354 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2907 1.0902 0.0000 4 7 3.5165 0.6483 -0.0006 5 7 3.5222 -0.6369 0.0041 6 6 2.2894 -1.0884 -0.0006 7 16 1.7928 -2.7789 0.0000 8 6 3.4144 -3.5829 -0.0013 9 6 3.2306 -5.1018 -0.0017 10 6 4.5808 -5.7712 -0.0034 11 1 5.4800 -5.1731 -0.0038 12 6 4.6680 -7.1472 -0.0034 13 7 3.5730 -7.8756 -0.0025 14 14 6.3417 -7.9770 -0.0063 15 1 7.4070 -6.9424 -0.0076 16 1 6.4763 -8.8240 1.2060 17 1 6.4721 -8.8240 -1.2190 18 1 -0.3633 -0.0001 1.0277 19 1 -0.3634 0.8900 -0.5137 20 1 -0.3634 -0.8900 -0.5138 21 1 1.9837 2.1256 0.0004 22 1 3.9690 -3.2839 0.8881 23 1 3.9674 -3.2840 -0.8918 24 1 2.6774 -5.4011 0.8886 25 1 2.6762 -5.4005 -0.8913 26 1 3.6344 -8.8436 -0.0021 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019847650.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:40 Heat of formation + Delta-G solvation = 66.435842 kcal Electronic energy + Delta-G solvation = -11473.306789 eV Core-core repulsion = 9293.535509 eV Total energy + Delta-G solvation = -2179.771280 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.063 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -42.67411 -34.94556 -33.73389 -31.01965 -30.43680 -27.67323 -25.32919 -22.70978 -22.23325 -20.92723 -17.76164 -16.56767 -16.29002 -15.92370 -15.08000 -14.49275 -13.82706 -13.67348 -13.48977 -13.08381 -12.16467 -11.81811 -11.36481 -11.07097 -10.65846 -10.56166 -10.44542 -10.19010 -9.96833 -9.76997 -9.70398 -9.16142 -8.44375 -7.33111 -6.08499 -4.12240 1.43915 1.76478 2.62000 2.81878 2.97141 3.29960 3.37578 3.43415 4.42612 4.46207 4.58300 4.88509 5.16577 5.28052 5.29284 5.68270 6.01191 6.04066 6.21112 6.68621 6.75414 7.47714 7.53723 7.87914 8.24109 8.77038 8.92756 9.52215 11.02547 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.065271 B = 0.006257 C = 0.005739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.876524 B = 4474.201904 C = 4877.329199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.476 5.476 3 C 0.142 3.858 4 N -0.291 5.291 5 N -0.296 5.296 6 C 0.171 3.829 7 S -0.036 6.036 8 C -0.072 4.072 9 C 0.035 3.965 10 C -0.517 4.517 11 H 0.062 0.938 12 C 0.059 3.941 13 N -0.893 5.893 14 Si 0.898 3.102 15 H -0.271 1.271 16 H -0.283 1.283 17 H -0.283 1.283 18 H 0.082 0.918 19 H 0.091 0.909 20 H 0.093 0.907 21 H 0.218 0.782 22 H 0.085 0.915 23 H 0.085 0.915 24 H 0.028 0.972 25 H 0.028 0.972 26 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.576 14.197 -0.048 16.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.171 5.171 3 C -0.148 4.148 4 N -0.130 5.130 5 N -0.140 5.140 6 C -0.203 4.203 7 S 0.193 5.807 8 C -0.221 4.221 9 C -0.005 4.005 10 C -0.557 4.557 11 H 0.080 0.920 12 C -0.143 4.143 13 N -0.532 5.532 14 Si 0.726 3.274 15 H -0.195 1.195 16 H -0.209 1.209 17 H -0.209 1.209 18 H 0.101 0.899 19 H 0.110 0.890 20 H 0.112 0.888 21 H 0.235 0.765 22 H 0.104 0.896 23 H 0.104 0.896 24 H 0.046 0.954 25 H 0.046 0.954 26 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.239 13.582 -0.045 15.886 hybrid contribution 0.507 0.233 0.004 0.558 sum -7.732 13.816 -0.041 15.832 Atomic orbital electron populations 1.22089 0.75188 1.05229 1.04233 1.46563 1.08795 1.05528 1.56207 1.26592 0.86912 0.94556 1.06707 1.73922 1.18350 1.03635 1.17094 1.74763 1.15822 1.02655 1.20743 1.27335 0.89871 0.96875 1.06267 1.85625 1.17789 0.85359 1.91899 1.23999 0.90818 1.01415 1.05838 1.18997 0.98513 0.84387 0.98565 1.21104 0.91788 0.91310 1.51511 0.91959 1.25006 0.96935 0.97373 0.94945 1.69969 1.27303 1.05647 1.50235 0.86429 0.83905 0.79463 0.77633 1.19505 1.20896 1.20891 0.89905 0.89003 0.88788 0.76539 0.89610 0.89633 0.95383 0.95387 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.59 11.09 59.85 0.66 1.25 15 2 N -0.48 -6.23 3.21 -125.58 -0.40 -6.63 15 3 C 0.14 1.82 12.80 -88.95 -1.14 0.68 15 4 N -0.29 -5.15 12.18 29.90 0.36 -4.78 15 5 N -0.30 -5.88 11.60 30.68 0.36 -5.52 15 6 C 0.17 2.97 8.07 -88.33 -0.71 2.26 15 7 S -0.04 -0.65 21.81 -107.50 -2.34 -2.99 15 8 C -0.07 -1.55 5.17 37.16 0.19 -1.36 15 9 C 0.03 0.88 4.98 -27.88 -0.14 0.74 15 10 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 15 11 H 0.06 1.71 7.74 -52.49 -0.41 1.30 15 12 C 0.06 1.68 5.46 -17.82 -0.10 1.58 15 13 N -0.89 -26.25 13.29 55.43 0.74 -25.51 15 14 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 15 15 H -0.27 -6.38 7.11 56.52 0.40 -5.98 15 16 H -0.28 -6.69 7.11 56.52 0.40 -6.28 15 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 18 H 0.08 0.54 8.14 -51.93 -0.42 0.11 15 19 H 0.09 0.42 8.14 -51.93 -0.42 0.00 15 20 H 0.09 0.75 7.86 -51.93 -0.41 0.35 15 21 H 0.22 1.55 8.06 -52.49 -0.42 1.13 15 22 H 0.09 1.87 8.14 -51.92 -0.42 1.45 15 23 H 0.09 1.87 8.14 -51.92 -0.42 1.44 15 24 H 0.03 0.74 8.14 -51.93 -0.42 0.32 15 25 H 0.03 0.74 8.14 -51.93 -0.42 0.32 15 26 H 0.26 7.24 8.31 -40.82 -0.34 6.90 15 LS Contribution 250.44 15.07 3.77 3.77 Total: -1.00 -33.02 250.44 -6.99 -40.01 By element: Atomic # 1 Polarization: -2.32 SS G_CDS: -2.91 Total: -5.23 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -1.55 Total: -9.59 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: 1.05 Total: -42.44 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -0.65 SS G_CDS: -2.34 Total: -2.99 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -33.02 -6.99 -40.01 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019847650.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.443 kcal (2) G-P(sol) polarization free energy of solvation -33.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds