Wall clock time and date at job start Sun Mar 29 2020 21:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36758 * 127.14130 * 2 1 4 4 N 1.30303 * 107.31836 * 180.02562 * 3 2 1 5 5 N 1.28519 * 110.07581 * 359.76310 * 4 3 2 6 6 C 1.31288 * 109.86183 * 0.39605 * 5 4 3 7 7 S 1.76193 * 126.48738 * 179.88307 * 6 5 4 8 8 C 1.81002 * 100.00049 * 359.68248 * 7 6 5 9 9 C 1.53000 * 109.47004 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.46912 * 179.97438 * 9 8 7 11 11 H 1.08001 * 119.99776 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00001 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00114 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99955 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46999 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.46979 * 120.00420 * 14 12 10 17 17 H 1.48498 * 109.46942 * 240.00334 * 14 12 10 18 18 H 1.09006 * 109.46808 * 269.99482 * 1 2 3 19 19 H 1.08995 * 109.47690 * 29.99195 * 1 2 3 20 20 H 1.09001 * 109.47236 * 150.00216 * 1 2 3 21 21 H 1.07999 * 126.34145 * 0.02562 * 3 2 1 22 22 H 1.09002 * 109.47115 * 60.00094 * 8 7 6 23 23 H 1.09001 * 109.46925 * 300.00251 * 8 7 6 24 24 H 1.09001 * 109.47194 * 299.99731 * 9 8 7 25 25 H 1.08992 * 109.47399 * 59.99903 * 9 8 7 26 26 H 0.97000 * 120.00354 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2907 1.0902 0.0000 4 7 3.5165 0.6483 -0.0006 5 7 3.5222 -0.6369 0.0041 6 6 2.2894 -1.0884 -0.0006 7 16 1.7928 -2.7789 0.0000 8 6 3.4144 -3.5829 -0.0013 9 6 3.2306 -5.1018 -0.0017 10 6 4.5808 -5.7712 -0.0034 11 1 5.4800 -5.1731 -0.0038 12 6 4.6680 -7.1472 -0.0034 13 7 3.5730 -7.8756 -0.0025 14 14 6.3417 -7.9770 -0.0063 15 1 7.4070 -6.9424 -0.0076 16 1 6.4763 -8.8240 1.2060 17 1 6.4721 -8.8240 -1.2190 18 1 -0.3633 -0.0001 1.0277 19 1 -0.3634 0.8900 -0.5137 20 1 -0.3634 -0.8900 -0.5138 21 1 1.9837 2.1256 0.0004 22 1 3.9690 -3.2839 0.8881 23 1 3.9674 -3.2840 -0.8918 24 1 2.6774 -5.4011 0.8886 25 1 2.6762 -5.4005 -0.8913 26 1 3.6344 -8.8436 -0.0021 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019847650.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:39 Heat of formation + Delta-G solvation = 46.336319 kcal Electronic energy + Delta-G solvation = -11474.178370 eV Core-core repulsion = 9293.535509 eV Total energy + Delta-G solvation = -2180.642861 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.063 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.84168 -36.02841 -35.74680 -32.99844 -31.72267 -28.48108 -27.37536 -24.08993 -23.44147 -22.63591 -18.88672 -18.69487 -17.38164 -17.11793 -16.52684 -16.14391 -15.62025 -15.23600 -14.33866 -14.11654 -13.77028 -13.63320 -12.99304 -12.69381 -12.48423 -12.31726 -12.00601 -11.73890 -11.43175 -11.30822 -11.11717 -11.03292 -10.60378 -8.73174 -8.24248 -6.35955 0.08607 0.63970 1.12206 1.41670 1.42638 1.56285 1.76521 1.77370 2.41344 3.09719 3.68164 3.83999 4.18871 4.19880 4.33636 4.36380 4.65184 4.67440 4.82149 4.94633 5.35802 5.44894 5.72622 5.83359 6.11332 6.76266 7.33077 7.57253 8.87544 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.065271 B = 0.006257 C = 0.005739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.876524 B = 4474.201904 C = 4877.329199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.468 5.468 3 C 0.176 3.824 4 N -0.343 5.343 5 N -0.340 5.340 6 C 0.147 3.853 7 S -0.001 6.001 8 C -0.068 4.068 9 C 0.043 3.957 10 C -0.542 4.542 11 H 0.061 0.939 12 C 0.007 3.993 13 N -0.927 5.927 14 Si 0.968 3.032 15 H -0.266 1.266 16 H -0.275 1.275 17 H -0.275 1.275 18 H 0.100 0.900 19 H 0.134 0.866 20 H 0.089 0.911 21 H 0.276 0.724 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.010 0.990 25 H 0.010 0.990 26 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.366 15.847 -0.058 18.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.162 5.162 3 C -0.115 4.115 4 N -0.181 5.181 5 N -0.184 5.184 6 C -0.229 4.229 7 S 0.228 5.772 8 C -0.217 4.217 9 C 0.004 3.996 10 C -0.582 4.582 11 H 0.079 0.921 12 C -0.191 4.191 13 N -0.566 5.566 14 Si 0.792 3.208 15 H -0.190 1.190 16 H -0.201 1.201 17 H -0.201 1.201 18 H 0.118 0.882 19 H 0.152 0.848 20 H 0.108 0.892 21 H 0.292 0.708 22 H 0.095 0.905 23 H 0.095 0.905 24 H 0.028 0.972 25 H 0.028 0.972 26 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.051 15.245 -0.055 17.729 hybrid contribution 0.617 -0.108 0.008 0.627 sum -8.434 15.137 -0.047 17.328 Atomic orbital electron populations 1.22562 0.71900 1.07174 1.06012 1.46879 1.10599 1.04105 1.54567 1.27672 0.85437 0.96341 1.02030 1.73822 1.21323 1.02877 1.20091 1.74652 1.17626 1.04185 1.21971 1.27107 0.90469 0.97374 1.07975 1.85219 1.13568 0.85857 1.92526 1.23530 0.93727 0.99503 1.04958 1.18751 0.97119 0.87064 0.96647 1.21498 0.92860 0.92099 1.51698 0.92110 1.25903 1.00905 0.98036 0.94303 1.70072 1.29534 1.06138 1.50882 0.85356 0.79112 0.78347 0.77992 1.18966 1.20081 1.20072 0.88172 0.84790 0.89218 0.70830 0.90506 0.90517 0.97189 0.97182 0.92411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.74 11.09 127.77 1.42 2.16 15 2 N -0.47 -10.88 3.21 -551.23 -1.77 -12.65 15 3 C 0.18 3.88 12.80 179.76 2.30 6.18 15 4 N -0.34 -11.71 12.18 -59.32 -0.72 -12.43 15 5 N -0.34 -13.53 11.60 -56.85 -0.66 -14.18 15 6 C 0.15 5.00 8.07 179.55 1.45 6.45 15 7 S 0.00 -0.03 21.81 -56.49 -1.23 -1.26 15 8 C -0.07 -3.03 5.17 71.98 0.37 -2.66 15 9 C 0.04 2.28 4.98 29.85 0.15 2.43 15 10 C -0.54 -31.01 9.11 25.60 0.23 -30.78 15 11 H 0.06 3.41 7.74 -2.91 -0.02 3.38 15 12 C 0.01 0.43 5.46 84.66 0.46 0.89 15 13 N -0.93 -55.31 13.29 21.45 0.28 -55.03 15 14 Si 0.97 44.34 29.54 68.60 2.03 46.37 15 15 H -0.27 -11.84 7.11 99.48 0.71 -11.13 15 16 H -0.28 -12.21 7.11 99.48 0.71 -11.51 15 17 H -0.28 -12.21 7.11 99.48 0.71 -11.50 15 18 H 0.10 0.89 8.14 -2.38 -0.02 0.87 15 19 H 0.13 0.48 8.14 -2.39 -0.02 0.46 15 20 H 0.09 1.17 7.86 -2.39 -0.02 1.15 15 21 H 0.28 2.33 8.06 -2.91 -0.02 2.31 15 22 H 0.08 3.49 8.14 -2.39 -0.02 3.47 15 23 H 0.08 3.49 8.14 -2.39 -0.02 3.47 15 24 H 0.01 0.54 8.14 -2.39 -0.02 0.52 15 25 H 0.01 0.55 8.14 -2.39 -0.02 0.53 15 26 H 0.27 14.86 8.31 -92.71 -0.77 14.09 15 Total: -1.00 -73.89 250.44 5.48 -68.41 By element: Atomic # 1 Polarization: -5.06 SS G_CDS: 1.17 Total: -3.89 kcal Atomic # 6 Polarization: -21.71 SS G_CDS: 6.38 Total: -15.33 kcal Atomic # 7 Polarization: -91.43 SS G_CDS: -2.87 Total: -94.30 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 16 Polarization: -0.03 SS G_CDS: -1.23 Total: -1.26 kcal Total: -73.89 5.48 -68.41 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019847650.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.750 kcal (2) G-P(sol) polarization free energy of solvation -73.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds