Wall clock time and date at job start Sun Mar 29 2020 21:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46909 * 109.47025 * 2 1 4 4 C 1.46846 * 111.00162 * 45.78723 * 3 2 1 5 5 C 1.53030 * 109.52377 * 185.84294 * 4 3 2 6 6 C 1.53123 * 109.28009 * 300.82027 * 5 4 3 7 7 N 1.46898 * 109.57391 * 177.58907 * 6 5 4 8 8 C 1.46905 * 110.99826 * 85.29026 * 7 6 5 9 9 C 1.50700 * 109.47161 * 179.97438 * 8 7 6 10 10 H 1.08003 * 119.99879 * 0.02562 * 9 8 7 11 11 C 1.37871 * 120.00081 * 180.02562 * 9 8 7 12 12 N 1.31521 * 120.00105 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00155 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.46978 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47182 * 119.99954 * 13 11 9 16 16 H 1.48492 * 109.47244 * 239.99748 * 13 11 9 17 17 C 1.53118 * 109.15585 * 57.65675 * 6 5 4 18 18 C 1.46846 * 111.00243 * 170.00251 * 3 2 1 19 19 H 1.08999 * 109.47491 * 59.99991 * 1 2 3 20 20 H 1.09001 * 109.46965 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47102 * 300.00128 * 1 2 3 22 22 H 1.09000 * 109.47102 * 239.99872 * 2 1 3 23 23 H 1.09003 * 109.47357 * 119.99499 * 2 1 3 24 24 H 1.08999 * 109.46373 * 305.86398 * 4 3 2 25 25 H 1.08998 * 109.45881 * 65.82485 * 4 3 2 26 26 H 1.09003 * 109.50272 * 180.88314 * 5 4 3 27 27 H 1.09003 * 109.50540 * 60.76497 * 5 4 3 28 28 H 1.08993 * 109.52379 * 297.75279 * 6 5 4 29 29 H 1.00891 * 111.00437 * 321.33388 * 7 6 5 30 30 H 1.09002 * 109.46916 * 299.99886 * 8 7 6 31 31 H 1.09003 * 109.46931 * 59.99939 * 8 7 6 32 32 H 0.96993 * 120.00035 * 180.02562 * 12 11 9 33 33 H 1.09008 * 109.50062 * 182.40805 * 17 6 5 34 34 H 1.09002 * 109.53946 * 62.30558 * 17 6 5 35 35 H 1.08998 * 109.45759 * 294.17597 * 18 3 2 36 36 H 1.09003 * 109.46299 * 54.15067 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.2938 2.1999 0.9826 5 6 1.7263 3.6622 0.8539 6 6 3.2353 3.7659 1.0921 7 7 3.6672 5.1585 0.9132 8 6 3.4901 5.9278 2.1521 9 6 3.9433 7.3479 1.9307 10 1 4.3244 7.6490 0.9660 11 6 3.8714 8.2628 2.9596 12 7 3.4069 7.8964 4.1342 13 14 4.4325 10.0233 2.6850 14 1 4.9089 10.1786 1.2871 15 1 3.2964 10.9484 2.9271 16 1 5.5388 10.3421 3.6228 17 6 3.9654 2.8707 0.0870 18 6 3.4680 1.4313 0.2380 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.8933 -0.5139 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 0.2222 2.1206 0.7995 25 1 1.5177 1.8420 1.9875 26 1 1.1989 4.2642 1.5939 27 1 1.4900 4.0249 -0.1465 28 1 3.4673 3.4399 2.1059 29 1 3.1785 5.5929 0.1449 30 1 2.4377 5.9220 2.4360 31 1 4.0836 5.4772 2.9476 32 1 3.3560 8.5401 4.8579 33 1 5.0378 2.9071 0.2791 34 1 3.7649 3.2206 -0.9257 35 1 3.6817 1.0770 1.2464 36 1 3.9755 0.7939 -0.4861 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020199411.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:10 Heat of formation + Delta-G solvation = -8.337258 kcal Electronic energy + Delta-G solvation = -14412.519852 eV Core-core repulsion = 12123.845396 eV Total energy + Delta-G solvation = -2288.674456 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.08760 -35.75397 -33.10008 -31.68099 -30.52249 -28.91639 -26.13843 -23.66877 -22.84602 -21.45156 -20.77713 -19.51600 -16.56275 -15.90595 -15.12625 -14.75666 -14.56782 -14.16644 -13.86913 -13.47484 -13.21853 -12.60297 -12.32125 -12.16237 -11.73952 -11.60179 -11.30206 -11.14480 -10.95977 -10.91662 -10.74901 -10.51452 -10.18867 -10.11890 -9.71657 -9.10831 -8.46511 -8.22590 -7.19676 -6.01225 -4.02867 3.32425 3.39571 3.45073 3.97078 4.45042 4.91559 5.00034 5.06596 5.18051 5.30242 5.34909 5.37659 5.49378 5.53556 5.64731 5.72577 5.83069 5.92239 5.98828 6.03009 6.06517 6.17429 6.31744 6.40597 6.62718 6.73965 7.17866 7.21236 7.31221 7.47887 7.82512 8.16485 8.45662 8.67096 9.07365 9.62177 11.09953 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.069300 B = 0.005603 C = 0.005399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.941366 B = 4996.232763 C = 5184.600128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.050 3.950 3 N -0.539 5.539 4 C 0.055 3.945 5 C -0.144 4.144 6 C 0.086 3.914 7 N -0.685 5.685 8 C 0.194 3.806 9 C -0.512 4.512 10 H 0.063 0.937 11 C 0.055 3.945 12 N -0.899 5.899 13 Si 0.898 3.102 14 H -0.272 1.272 15 H -0.285 1.285 16 H -0.284 1.284 17 C -0.102 4.102 18 C 0.057 3.943 19 H 0.063 0.937 20 H 0.056 0.944 21 H 0.058 0.942 22 H 0.072 0.928 23 H 0.029 0.971 24 H 0.076 0.924 25 H 0.029 0.971 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.329 0.671 30 H -0.014 1.014 31 H 0.025 0.975 32 H 0.260 0.740 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.030 0.970 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.237 -13.970 -6.959 16.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.077 4.077 3 N -0.264 5.264 4 C -0.073 4.073 5 C -0.184 4.184 6 C -0.025 4.025 7 N -0.314 5.314 8 C 0.067 3.933 9 C -0.551 4.551 10 H 0.081 0.919 11 C -0.146 4.146 12 N -0.539 5.539 13 Si 0.726 3.274 14 H -0.196 1.196 15 H -0.211 1.211 16 H -0.210 1.210 17 C -0.141 4.141 18 C -0.071 4.071 19 H 0.082 0.918 20 H 0.075 0.925 21 H 0.077 0.923 22 H 0.090 0.910 23 H 0.047 0.953 24 H 0.094 0.906 25 H 0.047 0.953 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.146 0.854 30 H 0.004 0.996 31 H 0.043 0.957 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.048 0.952 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.676 -13.818 -7.103 15.966 hybrid contribution -0.579 0.708 0.916 1.294 sum -4.255 -13.110 -6.188 15.109 Atomic orbital electron populations 1.21945 0.95259 1.01555 1.02638 1.22060 0.95618 0.89666 1.00400 1.62040 1.04273 1.09857 1.50274 1.22158 0.98425 0.93910 0.92831 1.22353 0.98741 0.95048 1.02265 1.21555 0.91189 0.91504 0.98236 1.60734 1.60883 1.00459 1.09285 1.19572 0.94668 0.92451 0.86583 1.21255 1.41717 0.94230 0.97912 0.91925 1.24992 0.95454 0.99083 0.95091 1.69976 1.46695 1.34889 1.02325 0.86436 0.78249 0.84389 0.78306 1.19632 1.21118 1.21028 1.21567 0.99825 0.92427 1.00260 1.22112 0.87538 0.98296 0.99131 0.91783 0.92469 0.92259 0.90956 0.95272 0.90574 0.95257 0.91461 0.91383 0.91705 0.85382 0.99578 0.95666 0.93021 0.91153 0.91451 0.95189 0.91148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 9.16 37.16 0.34 -1.14 16 2 C 0.05 0.54 5.99 -3.82 -0.02 0.52 16 3 N -0.54 -7.13 4.81 -234.67 -1.13 -8.25 16 4 C 0.06 0.77 4.85 -3.84 -0.02 0.75 16 5 C -0.14 -2.37 5.35 -26.65 -0.14 -2.52 16 6 C 0.09 1.57 2.53 -67.59 -0.17 1.40 16 7 N -0.68 -14.99 6.24 -107.86 -0.67 -15.67 16 8 C 0.19 5.16 5.24 -4.97 -0.03 5.14 16 9 C -0.51 -14.75 9.32 -34.44 -0.32 -15.08 16 10 H 0.06 1.78 7.81 -52.48 -0.41 1.37 16 11 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 12 N -0.90 -27.19 13.29 55.43 0.74 -26.46 16 13 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 14 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 15 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 17 C -0.10 -1.58 5.70 -26.65 -0.15 -1.73 16 18 C 0.06 0.76 5.42 -3.84 -0.02 0.74 16 19 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 20 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 21 H 0.06 0.58 6.21 -51.93 -0.32 0.26 16 22 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.03 0.31 8.08 -51.93 -0.42 -0.11 16 24 H 0.08 0.97 5.81 -51.93 -0.30 0.66 16 25 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.07 1.20 7.55 -51.93 -0.39 0.81 16 27 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 28 H 0.06 1.28 7.80 -51.93 -0.41 0.87 16 29 H 0.33 6.97 8.44 -39.30 -0.33 6.64 16 30 H -0.01 -0.38 7.51 -51.93 -0.39 -0.77 16 31 H 0.03 0.73 8.06 -51.93 -0.42 0.31 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.07 1.10 8.14 -51.92 -0.42 0.68 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.82 8.12 -51.93 -0.42 0.40 16 LS Contribution 283.02 15.07 4.27 4.27 Total: -1.00 -29.88 283.02 -8.78 -38.66 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -6.33 Total: 0.96 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: -0.63 Total: -10.42 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: -1.06 Total: -50.38 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.88 -8.78 -38.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199411.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.325 kcal (2) G-P(sol) polarization free energy of solvation -29.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds