Wall clock time and date at job start Sun Mar 29 2020 21:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46909 * 109.47025 * 2 1 4 4 C 1.46846 * 111.00162 * 45.78723 * 3 2 1 5 5 C 1.53030 * 109.52377 * 185.84294 * 4 3 2 6 6 C 1.53123 * 109.28009 * 300.82027 * 5 4 3 7 7 N 1.46898 * 109.57391 * 177.58907 * 6 5 4 8 8 C 1.46905 * 110.99826 * 85.29026 * 7 6 5 9 9 C 1.50700 * 109.47161 * 179.97438 * 8 7 6 10 10 H 1.08003 * 119.99879 * 0.02562 * 9 8 7 11 11 C 1.37871 * 120.00081 * 180.02562 * 9 8 7 12 12 N 1.31521 * 120.00105 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00155 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.46978 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47182 * 119.99954 * 13 11 9 16 16 H 1.48492 * 109.47244 * 239.99748 * 13 11 9 17 17 C 1.53118 * 109.15585 * 57.65675 * 6 5 4 18 18 C 1.46846 * 111.00243 * 170.00251 * 3 2 1 19 19 H 1.08999 * 109.47491 * 59.99991 * 1 2 3 20 20 H 1.09001 * 109.46965 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47102 * 300.00128 * 1 2 3 22 22 H 1.09000 * 109.47102 * 239.99872 * 2 1 3 23 23 H 1.09003 * 109.47357 * 119.99499 * 2 1 3 24 24 H 1.08999 * 109.46373 * 305.86398 * 4 3 2 25 25 H 1.08998 * 109.45881 * 65.82485 * 4 3 2 26 26 H 1.09003 * 109.50272 * 180.88314 * 5 4 3 27 27 H 1.09003 * 109.50540 * 60.76497 * 5 4 3 28 28 H 1.08993 * 109.52379 * 297.75279 * 6 5 4 29 29 H 1.00891 * 111.00437 * 321.33388 * 7 6 5 30 30 H 1.09002 * 109.46916 * 299.99886 * 8 7 6 31 31 H 1.09003 * 109.46931 * 59.99939 * 8 7 6 32 32 H 0.96993 * 120.00035 * 180.02562 * 12 11 9 33 33 H 1.09008 * 109.50062 * 182.40805 * 17 6 5 34 34 H 1.09002 * 109.53946 * 62.30558 * 17 6 5 35 35 H 1.08998 * 109.45759 * 294.17597 * 18 3 2 36 36 H 1.09003 * 109.46299 * 54.15067 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.2938 2.1999 0.9826 5 6 1.7263 3.6622 0.8539 6 6 3.2353 3.7659 1.0921 7 7 3.6672 5.1585 0.9132 8 6 3.4901 5.9278 2.1521 9 6 3.9433 7.3479 1.9307 10 1 4.3244 7.6490 0.9660 11 6 3.8714 8.2628 2.9596 12 7 3.4069 7.8964 4.1342 13 14 4.4325 10.0233 2.6850 14 1 4.9089 10.1786 1.2871 15 1 3.2964 10.9484 2.9271 16 1 5.5388 10.3421 3.6228 17 6 3.9654 2.8707 0.0870 18 6 3.4680 1.4313 0.2380 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.8933 -0.5139 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 0.2222 2.1206 0.7995 25 1 1.5177 1.8420 1.9875 26 1 1.1989 4.2642 1.5939 27 1 1.4900 4.0249 -0.1465 28 1 3.4673 3.4399 2.1059 29 1 3.1785 5.5929 0.1449 30 1 2.4377 5.9220 2.4360 31 1 4.0836 5.4772 2.9476 32 1 3.3560 8.5401 4.8579 33 1 5.0378 2.9071 0.2791 34 1 3.7649 3.2206 -0.9257 35 1 3.6817 1.0770 1.2464 36 1 3.9755 0.7939 -0.4861 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020199411.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:10 Heat of formation + Delta-G solvation = -29.609912 kcal Electronic energy + Delta-G solvation = -14413.442304 eV Core-core repulsion = 12123.845396 eV Total energy + Delta-G solvation = -2289.596908 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.30332 -37.27378 -35.00663 -33.20677 -31.80196 -30.22253 -28.01108 -24.98267 -24.27363 -23.17830 -21.98179 -20.82658 -18.58276 -17.20644 -16.74109 -16.15944 -15.76909 -15.64031 -15.39562 -14.88329 -14.52678 -14.09039 -14.03420 -13.44921 -13.32700 -12.84732 -12.77443 -12.57533 -12.48543 -12.19501 -12.14714 -12.06951 -11.82620 -11.52714 -11.38417 -11.08030 -10.67130 -9.26988 -9.03890 -8.23354 -6.34864 1.40826 1.41633 1.55886 2.39813 2.94915 3.09863 3.52836 3.84025 3.91548 4.12271 4.23675 4.28341 4.34289 4.49410 4.58696 4.62377 4.64891 4.76626 4.82815 4.96303 4.98260 5.06220 5.11551 5.16572 5.25566 5.27612 5.35142 5.40577 5.62765 6.02216 6.12736 6.19013 6.46925 6.73360 6.89965 7.36532 8.88521 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.069300 B = 0.005603 C = 0.005399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.941366 B = 4996.232763 C = 5184.600128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.048 3.952 3 N -0.546 5.546 4 C 0.062 3.938 5 C -0.137 4.137 6 C 0.083 3.917 7 N -0.684 5.684 8 C 0.211 3.789 9 C -0.536 4.536 10 H 0.064 0.936 11 C 0.001 3.999 12 N -0.936 5.936 13 Si 0.975 3.025 14 H -0.262 1.262 15 H -0.277 1.277 16 H -0.278 1.278 17 C -0.093 4.093 18 C 0.062 3.938 19 H 0.061 0.939 20 H 0.076 0.924 21 H 0.053 0.947 22 H 0.086 0.914 23 H 0.032 0.968 24 H 0.093 0.907 25 H 0.023 0.977 26 H 0.044 0.956 27 H 0.071 0.929 28 H 0.043 0.957 29 H 0.335 0.665 30 H -0.038 1.038 31 H -0.007 1.007 32 H 0.265 0.735 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.027 0.973 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.255 -14.462 -8.312 17.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.079 4.079 3 N -0.271 5.271 4 C -0.066 4.066 5 C -0.177 4.177 6 C -0.027 4.027 7 N -0.313 5.313 8 C 0.083 3.917 9 C -0.574 4.574 10 H 0.083 0.917 11 C -0.197 4.197 12 N -0.576 5.576 13 Si 0.799 3.201 14 H -0.186 1.186 15 H -0.202 1.202 16 H -0.204 1.204 17 C -0.132 4.132 18 C -0.066 4.066 19 H 0.080 0.920 20 H 0.094 0.906 21 H 0.072 0.928 22 H 0.105 0.895 23 H 0.050 0.950 24 H 0.111 0.889 25 H 0.041 0.959 26 H 0.063 0.937 27 H 0.090 0.910 28 H 0.062 0.938 29 H 0.152 0.848 30 H -0.020 1.020 31 H 0.012 0.988 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.045 0.955 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.699 -14.340 -8.476 17.063 hybrid contribution -0.587 0.791 1.340 1.663 sum -4.285 -13.549 -7.137 15.902 Atomic orbital electron populations 1.21925 0.94275 1.02740 1.02183 1.22172 0.96478 0.88017 1.01200 1.62051 1.04028 1.11432 1.49618 1.22058 0.99497 0.92134 0.92931 1.22212 0.96931 0.96905 1.01605 1.21654 0.93071 0.89758 0.98221 1.60645 1.61487 1.01795 1.07352 1.19184 0.92337 0.92463 0.87679 1.21602 1.42214 0.95344 0.98241 0.91737 1.25975 0.95168 1.04003 0.94597 1.70104 1.47450 1.36729 1.03318 0.85253 0.77947 0.78252 0.78650 1.18592 1.20211 1.20366 1.21468 0.99298 0.93318 0.99076 1.22079 0.87972 0.96783 0.99803 0.92037 0.90551 0.92843 0.89526 0.94995 0.88923 0.95891 0.93718 0.90994 0.93845 0.84784 1.02034 0.98846 0.92617 0.91447 0.91189 0.95464 0.88707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.16 71.98 0.66 -1.85 16 2 C 0.05 0.91 5.99 86.30 0.52 1.43 16 3 N -0.55 -13.30 4.81 -896.36 -4.31 -17.61 16 4 C 0.06 1.68 4.85 86.32 0.42 2.10 16 5 C -0.14 -4.54 5.35 30.65 0.16 -4.38 16 6 C 0.08 3.10 2.53 45.00 0.11 3.21 16 7 N -0.68 -30.66 6.24 -495.15 -3.09 -33.75 16 8 C 0.21 11.72 5.24 85.56 0.45 12.16 16 9 C -0.54 -31.36 9.32 25.60 0.24 -31.13 16 10 H 0.06 3.67 7.81 -2.91 -0.02 3.65 16 11 C 0.00 0.03 5.46 84.65 0.46 0.49 16 12 N -0.94 -57.59 13.29 21.45 0.28 -57.30 16 13 Si 0.97 44.95 29.54 68.60 2.03 46.98 16 14 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 15 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 16 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 17 C -0.09 -2.80 5.70 30.65 0.17 -2.62 16 18 C 0.06 1.53 5.42 86.33 0.47 2.00 16 19 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 20 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 21 H 0.05 0.93 6.21 -2.39 -0.01 0.91 16 22 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 23 H 0.03 0.60 8.08 -2.39 -0.02 0.58 16 24 H 0.09 2.21 5.81 -2.39 -0.01 2.20 16 25 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.04 1.66 7.55 -2.39 -0.02 1.64 16 27 H 0.07 2.32 8.10 -2.39 -0.02 2.30 16 28 H 0.04 1.79 7.80 -2.39 -0.02 1.77 16 29 H 0.33 14.35 8.44 -89.70 -0.76 13.59 16 30 H -0.04 -2.25 7.51 -2.39 -0.02 -2.27 16 31 H -0.01 -0.40 8.06 -2.39 -0.02 -0.42 16 32 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 33 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 34 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.03 0.69 8.14 -2.39 -0.02 0.68 16 36 H 0.09 1.93 8.12 -2.39 -0.02 1.91 16 Total: -1.00 -64.32 283.02 -1.15 -65.47 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 0.27 Total: 14.79 kcal Atomic # 6 Polarization: -22.24 SS G_CDS: 3.67 Total: -18.58 kcal Atomic # 7 Polarization: -101.55 SS G_CDS: -7.11 Total: -108.66 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -64.32 -1.15 -65.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199411.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.858 kcal (2) G-P(sol) polarization free energy of solvation -64.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds