Wall clock time and date at job start Sun Mar 29 2020 22:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.47093 * 269.99513 * 3 2 1 5 5 H 1.48500 * 109.47049 * 30.00222 * 3 2 1 6 6 H 1.48504 * 109.47189 * 149.99610 * 3 2 1 7 7 C 1.37877 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00248 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00001 * 180.02562 * 7 2 1 10 10 N 1.46899 * 109.47107 * 180.02562 * 9 7 2 11 11 C 1.46847 * 111.00044 * 66.04660 * 10 9 7 12 12 C 1.53038 * 109.52866 * 185.83761 * 11 10 9 13 13 C 1.53117 * 109.27421 * 300.82510 * 12 11 10 14 14 C 1.53115 * 109.16360 * 57.65205 * 13 12 11 15 15 H 1.09000 * 109.50430 * 62.28388 * 14 13 12 16 16 C 1.50705 * 109.50467 * 182.36224 * 14 13 12 17 17 O 1.20821 * 119.99978 * 119.99508 * 16 14 13 18 18 O 1.34232 * 119.99943 * 300.00331 * 16 14 13 19 19 C 1.46844 * 110.99944 * 190.25611 * 10 9 7 20 20 H 0.97000 * 119.99684 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 22 22 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 23 23 H 1.09001 * 109.46436 * 305.85995 * 11 10 9 24 24 H 1.09007 * 109.46424 * 65.82219 * 11 10 9 25 25 H 1.09005 * 109.49841 * 60.75956 * 12 11 10 26 26 H 1.08994 * 109.50372 * 180.87942 * 12 11 10 27 27 H 1.09003 * 109.52002 * 177.55557 * 13 12 11 28 28 H 1.08996 * 109.52498 * 297.73838 * 13 12 11 29 29 H 0.96699 * 117.00062 * 180.02562 * 18 16 14 30 30 H 1.09004 * 109.46477 * 294.17796 * 19 10 9 31 31 H 1.08993 * 109.46460 * 54.14969 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 4.0012 -2.5791 0.0010 11 6 3.6523 -3.2605 -1.2521 12 6 4.0475 -4.7360 -1.1593 13 6 5.5532 -4.8407 -0.9015 14 6 5.8971 -4.0822 0.3833 15 1 5.3831 -4.5432 1.2267 16 6 7.3857 -4.1313 0.6134 17 8 8.0230 -3.1062 0.6656 18 8 8.0035 -5.3139 0.7602 19 6 5.4483 -2.6256 0.2456 20 1 -0.4850 0.8401 -0.0004 21 1 3.8745 -0.6801 0.8912 22 1 3.8752 -0.6804 -0.8888 23 1 2.5784 -3.1820 -1.4214 24 1 4.1853 -2.7932 -2.0803 25 1 3.5044 -5.2073 -0.3400 26 1 3.8027 -5.2379 -2.0953 27 1 5.8318 -5.8888 -0.7915 28 1 6.0973 -4.4043 -1.7390 29 1 8.9592 -5.2948 0.9061 30 1 5.9730 -2.1613 -0.5894 31 1 5.6789 -2.0862 1.1643 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000031945983.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:33 Heat of formation + Delta-G solvation = -98.258976 kcal Electronic energy + Delta-G solvation = -14489.053988 eV Core-core repulsion = 11962.928476 eV Total energy + Delta-G solvation = -2526.125511 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.47123 -38.13116 -36.11897 -33.80017 -32.03048 -30.83061 -27.71157 -24.57714 -23.62318 -21.64578 -20.61545 -19.35752 -18.00747 -16.77120 -16.58771 -15.77692 -14.92525 -14.36192 -14.19641 -13.67939 -13.46686 -13.16236 -12.90186 -12.39117 -12.20429 -11.59444 -11.55579 -11.23908 -10.83276 -10.74728 -10.62667 -10.50062 -10.13200 -9.87924 -9.82501 -9.26720 -8.58196 -7.44183 -6.06068 -4.03596 2.21954 3.01432 3.28980 3.36817 3.40095 4.42122 4.72306 4.77749 4.95878 5.10680 5.26817 5.47479 5.54234 5.61569 5.80635 6.01644 6.06741 6.10282 6.14178 6.28184 6.45791 6.59445 6.65610 6.86199 6.97922 7.58087 7.83209 7.90191 8.02376 8.63601 9.01816 9.55693 11.06834 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.045537 B = 0.007858 C = 0.006964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.741585 B = 3562.470830 C = 4019.931731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.069 3.931 3 Si 0.874 3.126 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.510 4.510 8 H 0.082 0.918 9 C 0.163 3.837 10 N -0.526 5.526 11 C 0.058 3.942 12 C -0.116 4.116 13 C -0.108 4.108 14 C -0.076 4.076 15 H 0.118 0.882 16 C 0.484 3.516 17 O -0.517 6.517 18 O -0.517 6.517 19 C 0.069 3.931 20 H 0.264 0.736 21 H 0.030 0.970 22 H -0.015 1.015 23 H 0.093 0.907 24 H 0.021 0.979 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.405 0.595 30 H 0.033 0.967 31 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.788 -9.836 -1.009 16.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.701 3.299 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.548 4.548 8 H 0.100 0.900 9 C 0.037 3.963 10 N -0.251 5.251 11 C -0.070 4.070 12 C -0.154 4.154 13 C -0.146 4.146 14 C -0.095 4.095 15 H 0.136 0.864 16 C 0.327 3.673 17 O -0.404 6.404 18 O -0.329 6.329 19 C -0.060 4.060 20 H 0.074 0.926 21 H 0.048 0.952 22 H 0.003 0.997 23 H 0.111 0.889 24 H 0.040 0.960 25 H 0.092 0.908 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.263 0.737 30 H 0.051 0.949 31 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 12.134 -9.666 -0.677 15.528 hybrid contribution 1.510 1.458 -0.508 2.159 sum 13.643 -8.209 -1.186 15.966 Atomic orbital electron populations 1.69889 1.06098 1.26866 1.51015 1.24885 0.94737 0.98836 0.94805 0.86880 0.80431 0.84054 0.78515 1.20346 1.21103 1.19115 1.21018 0.88573 0.94777 1.50434 0.89996 1.20178 0.97111 0.83675 0.95321 1.61838 1.09590 1.19313 1.34320 1.22066 1.02628 0.92281 0.90061 1.21637 0.94074 0.97666 1.01997 1.21559 0.98129 0.99813 0.95069 1.21113 0.86325 1.00165 1.01936 0.86448 1.23730 0.91712 0.80429 0.71479 1.90711 1.67669 1.35443 1.46612 1.84565 1.28712 1.35486 1.84108 1.21862 0.90327 0.92196 1.01596 0.92639 0.95168 0.99688 0.88854 0.96047 0.90761 0.91457 0.90907 0.92072 0.73691 0.94931 0.90464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.41 13.96 55.43 0.77 -26.64 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 3 Si 0.87 21.63 27.47 -169.99 -4.67 16.96 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 7 C -0.51 -14.37 8.98 -34.44 -0.31 -14.68 16 8 H 0.08 2.48 7.38 -52.49 -0.39 2.10 16 9 C 0.16 3.99 3.79 -4.98 -0.02 3.97 16 10 N -0.53 -10.91 4.65 -236.11 -1.10 -12.00 16 11 C 0.06 1.07 5.30 -3.83 -0.02 1.05 16 12 C -0.12 -1.64 6.09 -26.65 -0.16 -1.80 16 13 C -0.11 -1.37 5.21 -26.61 -0.14 -1.51 16 14 C -0.08 -1.08 2.79 -91.69 -0.26 -1.34 16 15 H 0.12 1.60 8.14 -51.93 -0.42 1.17 16 16 C 0.48 6.59 7.63 36.01 0.27 6.86 16 17 O -0.52 -8.63 16.74 -18.75 -0.31 -8.94 16 18 O -0.52 -5.24 13.35 -39.26 -0.52 -5.76 16 19 C 0.07 1.23 4.04 -3.83 -0.02 1.22 16 20 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 21 H 0.03 0.75 7.04 -51.93 -0.37 0.39 16 22 H -0.01 -0.36 7.55 -51.93 -0.39 -0.75 16 23 H 0.09 1.93 6.72 -51.93 -0.35 1.59 16 24 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.40 2.31 9.10 45.56 0.41 2.73 16 30 H 0.03 0.60 8.08 -51.93 -0.42 0.18 16 31 H 0.08 1.42 7.99 -51.93 -0.41 1.01 16 LS Contribution 257.25 15.07 3.88 3.88 Total: -1.00 -32.19 257.25 -6.31 -38.50 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: -3.62 Total: -1.66 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -0.74 Total: -4.33 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: -0.32 Total: -38.64 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.84 Total: -14.70 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -32.19 -6.31 -38.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031945983.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.757 kcal (2) G-P(sol) polarization free energy of solvation -32.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds