Wall clock time and date at job start Sun Mar 29 2020 22:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.47093 * 269.99513 * 3 2 1 5 5 H 1.48500 * 109.47049 * 30.00222 * 3 2 1 6 6 H 1.48504 * 109.47189 * 149.99610 * 3 2 1 7 7 C 1.37877 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00248 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00001 * 180.02562 * 7 2 1 10 10 N 1.46899 * 109.47107 * 180.02562 * 9 7 2 11 11 C 1.46847 * 111.00044 * 66.04660 * 10 9 7 12 12 C 1.53038 * 109.52866 * 185.83761 * 11 10 9 13 13 C 1.53117 * 109.27421 * 300.82510 * 12 11 10 14 14 C 1.53115 * 109.16360 * 57.65205 * 13 12 11 15 15 H 1.09000 * 109.50430 * 62.28388 * 14 13 12 16 16 C 1.50705 * 109.50467 * 182.36224 * 14 13 12 17 17 O 1.20821 * 119.99978 * 119.99508 * 16 14 13 18 18 O 1.34232 * 119.99943 * 300.00331 * 16 14 13 19 19 C 1.46844 * 110.99944 * 190.25611 * 10 9 7 20 20 H 0.97000 * 119.99684 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 22 22 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 23 23 H 1.09001 * 109.46436 * 305.85995 * 11 10 9 24 24 H 1.09007 * 109.46424 * 65.82219 * 11 10 9 25 25 H 1.09005 * 109.49841 * 60.75956 * 12 11 10 26 26 H 1.08994 * 109.50372 * 180.87942 * 12 11 10 27 27 H 1.09003 * 109.52002 * 177.55557 * 13 12 11 28 28 H 1.08996 * 109.52498 * 297.73838 * 13 12 11 29 29 H 0.96699 * 117.00062 * 180.02562 * 18 16 14 30 30 H 1.09004 * 109.46477 * 294.17796 * 19 10 9 31 31 H 1.08993 * 109.46460 * 54.14969 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 4.0012 -2.5791 0.0010 11 6 3.6523 -3.2605 -1.2521 12 6 4.0475 -4.7360 -1.1593 13 6 5.5532 -4.8407 -0.9015 14 6 5.8971 -4.0822 0.3833 15 1 5.3831 -4.5432 1.2267 16 6 7.3857 -4.1313 0.6134 17 8 8.0230 -3.1062 0.6656 18 8 8.0035 -5.3139 0.7602 19 6 5.4483 -2.6256 0.2456 20 1 -0.4850 0.8401 -0.0004 21 1 3.8745 -0.6801 0.8912 22 1 3.8752 -0.6804 -0.8888 23 1 2.5784 -3.1820 -1.4214 24 1 4.1853 -2.7932 -2.0803 25 1 3.5044 -5.2073 -0.3400 26 1 3.8027 -5.2379 -2.0953 27 1 5.8318 -5.8888 -0.7915 28 1 6.0973 -4.4043 -1.7390 29 1 8.9592 -5.2948 0.9061 30 1 5.9730 -2.1613 -0.5894 31 1 5.6789 -2.0862 1.1643 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000031945983.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:33 Heat of formation + Delta-G solvation = -122.651758 kcal Electronic energy + Delta-G solvation = -14490.111738 eV Core-core repulsion = 11962.928476 eV Total energy + Delta-G solvation = -2527.183262 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.56278 -39.50079 -37.10363 -35.51484 -33.96175 -32.11442 -29.64191 -25.83401 -25.22876 -23.11031 -22.07079 -20.63784 -19.05025 -18.89496 -17.76658 -16.93652 -16.41895 -16.11266 -15.74059 -15.00449 -14.96419 -14.56807 -14.41254 -13.96940 -13.69168 -13.25319 -12.71004 -12.58401 -12.53910 -12.45899 -11.98120 -11.85324 -11.73724 -11.50333 -11.27796 -11.16828 -10.79830 -9.11285 -8.29543 -6.32485 1.17751 1.32776 1.34861 1.45556 2.02507 2.32885 3.03020 3.25593 3.60346 3.79733 4.00331 4.24342 4.31555 4.48272 4.61312 4.66181 4.72579 4.79314 4.90625 4.98951 5.06920 5.11541 5.27441 5.42690 5.52455 5.59666 5.95246 6.34089 6.58717 6.73382 7.00572 7.31001 8.86622 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.045537 B = 0.007858 C = 0.006964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.741585 B = 3562.470830 C = 4019.931731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.012 3.988 3 Si 0.941 3.059 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.254 1.254 7 C -0.514 4.514 8 H 0.045 0.955 9 C 0.171 3.829 10 N -0.538 5.538 11 C 0.055 3.945 12 C -0.107 4.107 13 C -0.100 4.100 14 C -0.074 4.074 15 H 0.127 0.873 16 C 0.498 3.502 17 O -0.553 6.553 18 O -0.502 6.502 19 C 0.070 3.930 20 H 0.267 0.733 21 H 0.027 0.973 22 H -0.016 1.016 23 H 0.059 0.941 24 H 0.021 0.979 25 H 0.073 0.927 26 H 0.093 0.907 27 H 0.105 0.895 28 H 0.064 0.936 29 H 0.428 0.572 30 H 0.026 0.974 31 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.922 -10.754 -1.166 18.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.186 4.186 3 Si 0.765 3.235 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.178 1.178 7 C -0.553 4.553 8 H 0.063 0.937 9 C 0.044 3.956 10 N -0.262 5.262 11 C -0.072 4.072 12 C -0.144 4.144 13 C -0.137 4.137 14 C -0.093 4.093 15 H 0.145 0.855 16 C 0.341 3.659 17 O -0.444 6.444 18 O -0.316 6.316 19 C -0.058 4.058 20 H 0.076 0.924 21 H 0.045 0.955 22 H 0.002 0.998 23 H 0.078 0.922 24 H 0.040 0.960 25 H 0.092 0.908 26 H 0.111 0.889 27 H 0.123 0.877 28 H 0.082 0.918 29 H 0.290 0.710 30 H 0.044 0.956 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 14.300 -10.633 -0.833 17.840 hybrid contribution 0.829 1.622 -0.454 1.878 sum 15.129 -9.011 -1.287 17.656 Atomic orbital electron populations 1.70027 1.07901 1.28095 1.52460 1.25763 0.95571 1.02833 0.94431 0.85800 0.79419 0.79174 0.79085 1.19353 1.20378 1.17833 1.21215 0.90650 0.93507 1.49878 0.93677 1.19938 0.94605 0.86210 0.94877 1.61752 1.11715 1.17058 1.35682 1.22099 1.00633 0.95371 0.89138 1.21583 0.95352 0.94074 1.03427 1.21547 0.96624 1.01430 0.94125 1.21005 0.87340 0.97595 1.03384 0.85516 1.23361 0.91213 0.80663 0.70635 1.90715 1.68316 1.36868 1.48466 1.84489 1.30697 1.33192 1.83188 1.21831 0.88154 0.95103 1.00704 0.92355 0.95496 0.99849 0.92201 0.96035 0.90843 0.88891 0.87705 0.91766 0.71021 0.95614 0.91499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.98 13.96 21.45 0.30 -58.69 16 2 C 0.01 0.69 5.47 84.65 0.46 1.15 16 3 Si 0.94 44.79 27.47 68.60 1.88 46.68 16 4 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.25 -11.52 6.54 99.48 0.65 -10.87 16 7 C -0.51 -29.88 8.98 25.60 0.23 -29.65 16 8 H 0.04 2.88 7.38 -2.91 -0.02 2.86 16 9 C 0.17 8.43 3.79 85.56 0.32 8.75 16 10 N -0.54 -22.34 4.65 -900.92 -4.19 -26.52 16 11 C 0.06 2.05 5.30 86.33 0.46 2.51 16 12 C -0.11 -2.78 6.09 30.65 0.19 -2.59 16 13 C -0.10 -2.19 5.21 30.67 0.16 -2.03 16 14 C -0.07 -1.92 2.79 -11.49 -0.03 -1.95 16 15 H 0.13 3.10 8.14 -2.39 -0.02 3.08 16 16 C 0.50 12.13 7.63 71.24 0.54 12.67 16 17 O -0.55 -17.44 16.74 21.98 0.37 -17.07 16 18 O -0.50 -8.14 13.35 -51.43 -0.69 -8.83 16 19 C 0.07 2.46 4.04 86.33 0.35 2.81 16 20 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 21 H 0.03 1.34 7.04 -2.39 -0.02 1.32 16 22 H -0.02 -0.79 7.55 -2.39 -0.02 -0.81 16 23 H 0.06 2.58 6.72 -2.39 -0.02 2.57 16 24 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 25 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 26 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.43 3.14 9.10 -74.06 -0.67 2.47 16 30 H 0.03 0.93 8.08 -2.39 -0.02 0.91 16 31 H 0.07 2.44 7.99 -2.39 -0.02 2.42 16 Total: -1.00 -70.79 257.25 0.75 -70.04 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: 0.39 Total: 2.73 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: 2.68 Total: -8.34 kcal Atomic # 7 Polarization: -81.32 SS G_CDS: -3.89 Total: -85.21 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -0.32 Total: -25.91 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.88 Total: 46.68 kcal Total: -70.79 0.75 -70.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031945983.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.610 kcal (2) G-P(sol) polarization free energy of solvation -70.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds