Wall clock time and date at job start Sun Mar 29 2020 22:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99641 * 2 1 4 4 H 1.48506 * 109.47017 * 239.99648 * 3 2 1 5 5 H 1.48494 * 109.47163 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46948 * 119.99947 * 3 2 1 7 7 C 1.37869 * 120.00276 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00369 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99999 * 0.02562 * 7 2 1 10 10 N 1.46909 * 109.46842 * 180.02562 * 9 7 2 11 11 C 1.46846 * 111.00243 * 66.04838 * 10 9 7 12 12 C 1.53036 * 109.52162 * 174.15828 * 11 10 9 13 13 C 1.53118 * 109.28007 * 59.18140 * 12 11 10 14 14 C 1.53123 * 109.15585 * 302.34276 * 13 12 11 15 15 H 1.08997 * 109.50390 * 297.67422 * 14 13 12 16 16 C 1.50700 * 109.50204 * 177.59495 * 14 13 12 17 17 O 1.20818 * 120.00637 * 240.00131 * 16 14 13 18 18 O 1.34235 * 119.99667 * 59.99649 * 16 14 13 19 19 C 1.46846 * 111.00162 * 301.83310 * 10 9 7 20 20 H 0.97003 * 120.00418 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.46932 * 60.00416 * 9 7 2 22 22 H 1.08998 * 109.47176 * 299.99837 * 9 7 2 23 23 H 1.08998 * 109.45759 * 294.17597 * 11 10 9 24 24 H 1.09004 * 109.46280 * 54.13953 * 11 10 9 25 25 H 1.09008 * 109.49869 * 179.11730 * 12 11 10 26 26 H 1.09000 * 109.50168 * 299.23597 * 12 11 10 27 27 H 1.08993 * 109.52399 * 62.24659 * 13 12 11 28 28 H 1.08996 * 109.51997 * 182.43867 * 13 12 11 29 29 H 0.96705 * 116.99696 * 179.97438 * 18 16 14 30 30 H 1.08999 * 109.46373 * 305.86398 * 19 10 9 31 31 H 1.08998 * 109.45881 * 65.82485 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2059 -3.6156 0.0018 11 6 2.9699 -3.6534 1.2552 12 6 3.8463 -4.9077 1.2824 13 6 4.7981 -4.8855 0.0832 14 6 3.9785 -4.7972 -1.2072 15 1 3.3493 -5.6824 -1.3000 16 6 4.9092 -4.7154 -2.3897 17 8 4.8703 -3.7567 -3.1239 18 8 5.7815 -5.7076 -2.6272 19 6 3.0984 -3.5462 -1.1623 20 1 -0.4851 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8897 22 1 0.6241 -2.5567 0.8903 23 1 3.6014 -2.7675 1.3223 24 1 2.2812 -3.6731 2.0999 25 1 4.4250 -4.9273 2.2060 26 1 3.2144 -5.7943 1.2292 27 1 5.4563 -4.0198 0.1565 28 1 5.3942 -5.7979 0.0745 29 1 6.3577 -5.6106 -3.3977 30 1 2.5030 -3.4880 -2.0735 31 1 3.7293 -2.6608 -1.0838 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000031945984.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:35 Heat of formation + Delta-G solvation = -103.136535 kcal Electronic energy + Delta-G solvation = -14667.398026 eV Core-core repulsion = 12141.061008 eV Total energy + Delta-G solvation = -2526.337018 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.29483 -37.99482 -35.94679 -33.76034 -31.87686 -30.66273 -26.79692 -24.34937 -23.95894 -21.56887 -20.77663 -19.17941 -17.82950 -16.48799 -16.29028 -15.60984 -14.82865 -14.33880 -14.18428 -13.47661 -13.28812 -13.03003 -12.63690 -12.25110 -11.73599 -11.41084 -11.11930 -11.04913 -10.91172 -10.56086 -10.43982 -10.37453 -10.16494 -9.90602 -9.81023 -9.51532 -8.41768 -7.22365 -6.01810 -4.10775 2.40263 3.18808 3.30749 3.35190 3.38572 4.42423 4.95125 4.96426 5.14030 5.27426 5.29608 5.59978 5.71847 5.78623 5.95617 6.16130 6.18475 6.30301 6.43174 6.58737 6.63684 6.76166 6.83284 7.26450 7.51927 7.89629 8.00184 8.06979 8.25826 8.28912 8.98329 9.56146 11.03470 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.033944 B = 0.009057 C = 0.008061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.684488 B = 3090.660245 C = 3472.577589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.066 3.934 3 Si 0.888 3.112 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.551 4.551 8 H 0.056 0.944 9 C 0.189 3.811 10 N -0.541 5.541 11 C 0.058 3.942 12 C -0.115 4.115 13 C -0.107 4.107 14 C -0.078 4.078 15 H 0.111 0.889 16 C 0.481 3.519 17 O -0.510 6.510 18 O -0.521 6.521 19 C 0.081 3.919 20 H 0.263 0.737 21 H 0.033 0.967 22 H 0.033 0.967 23 H 0.038 0.962 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.403 0.597 30 H 0.074 0.926 31 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.235 -10.608 -0.574 14.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.137 4.137 3 Si 0.716 3.284 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.590 4.590 8 H 0.075 0.925 9 C 0.064 3.936 10 N -0.265 5.265 11 C -0.071 4.071 12 C -0.153 4.153 13 C -0.145 4.145 14 C -0.098 4.098 15 H 0.129 0.871 16 C 0.323 3.677 17 O -0.397 6.397 18 O -0.332 6.332 19 C -0.048 4.048 20 H 0.073 0.927 21 H 0.051 0.949 22 H 0.051 0.949 23 H 0.057 0.943 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.261 0.739 30 H 0.092 0.908 31 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.510 -10.686 -0.460 13.668 hybrid contribution 1.304 1.898 -0.563 2.371 sum 9.814 -8.787 -1.023 13.213 Atomic orbital electron populations 1.69929 1.05989 1.26967 1.50074 1.24945 0.94772 0.99137 0.94852 0.86711 0.79728 0.83275 0.78675 1.20173 1.21156 1.20282 1.21712 0.93311 0.92122 1.51841 0.92544 1.19746 0.90558 0.85201 0.98123 1.62416 1.16799 1.46823 1.00473 1.21935 0.96023 0.95538 0.93617 1.21635 0.97375 0.99751 0.96561 1.21523 0.97614 1.02110 0.93233 1.21201 0.94906 1.03556 0.90115 0.87110 1.23777 0.78815 0.79074 0.86046 1.90735 1.67898 1.32917 1.48139 1.84565 1.49003 1.48369 1.51304 1.21677 0.94521 0.93075 0.95532 0.92736 0.94915 0.94852 0.94346 0.91348 0.91801 0.91335 0.91944 0.91240 0.73883 0.90792 0.93225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 2 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.55 -15.32 7.74 -34.44 -0.27 -15.59 16 8 H 0.06 1.57 5.84 -52.48 -0.31 1.26 16 9 C 0.19 4.88 5.13 -4.97 -0.03 4.86 16 10 N -0.54 -11.50 4.86 -236.11 -1.15 -12.65 16 11 C 0.06 1.08 5.14 -3.84 -0.02 1.06 16 12 C -0.12 -1.65 6.09 -26.65 -0.16 -1.81 16 13 C -0.11 -1.49 5.21 -26.61 -0.14 -1.62 16 14 C -0.08 -1.22 2.79 -91.69 -0.26 -1.48 16 15 H 0.11 1.59 8.14 -51.93 -0.42 1.17 16 16 C 0.48 7.38 7.63 36.01 0.27 7.65 16 17 O -0.51 -9.67 16.74 -18.74 -0.31 -9.99 16 18 O -0.52 -5.96 13.35 -39.27 -0.52 -6.49 16 19 C 0.08 1.63 3.59 -3.84 -0.01 1.62 16 20 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 21 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 22 H 0.03 0.91 8.06 -51.93 -0.42 0.49 16 23 H 0.04 0.79 7.03 -51.93 -0.37 0.43 16 24 H 0.07 1.28 8.06 -51.93 -0.42 0.86 16 25 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 26 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.40 2.85 9.10 45.56 0.41 3.27 16 30 H 0.07 1.59 8.10 -51.93 -0.42 1.17 16 31 H 0.05 1.13 6.51 -51.93 -0.34 0.79 16 LS Contribution 257.74 15.07 3.88 3.88 Total: -1.00 -31.53 257.74 -6.61 -38.14 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -3.52 Total: -0.49 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -0.71 Total: -3.55 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: -0.41 Total: -38.34 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -0.84 Total: -16.47 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -31.53 -6.61 -38.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031945984.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.992 kcal (2) G-P(sol) polarization free energy of solvation -31.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds