Wall clock time and date at job start Sun Mar 29 2020 22:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86812 * 119.99622 * 2 1 4 4 H 1.48504 * 109.46398 * 269.99457 * 3 2 1 5 5 H 1.48497 * 109.47048 * 29.99266 * 3 2 1 6 6 H 1.48496 * 109.46972 * 149.99477 * 3 2 1 7 7 C 1.37877 * 120.00517 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99852 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99867 * 179.72943 * 7 2 1 10 10 N 1.46901 * 109.46972 * 174.98547 * 9 7 2 11 11 C 1.46846 * 110.99940 * 300.72926 * 10 9 7 12 12 C 1.53043 * 109.52705 * 185.84048 * 11 10 9 13 13 C 1.53119 * 109.27293 * 300.82276 * 12 11 10 14 14 C 1.50707 * 109.57301 * 177.58893 * 13 12 11 15 15 O 1.20823 * 119.99784 * 240.28622 * 14 13 12 16 16 O 1.34236 * 119.99778 * 60.28208 * 14 13 12 17 17 C 1.53117 * 109.16405 * 57.65542 * 13 12 11 18 18 C 1.46846 * 111.00467 * 64.94028 * 10 9 7 19 19 H 0.97003 * 120.00586 * 0.02562 * 1 2 3 20 20 H 1.09003 * 109.46959 * 294.98231 * 9 7 2 21 21 H 1.08998 * 109.47508 * 54.98775 * 9 7 2 22 22 H 1.08998 * 109.46431 * 305.85781 * 11 10 9 23 23 H 1.09001 * 109.46282 * 65.82305 * 11 10 9 24 24 H 1.08994 * 109.50185 * 180.87989 * 12 11 10 25 25 H 1.08996 * 109.49882 * 60.75716 * 12 11 10 26 26 H 1.08997 * 109.52509 * 297.74499 * 13 12 11 27 27 H 0.96699 * 116.99617 * 180.02562 * 16 14 13 28 28 H 1.09002 * 109.50148 * 182.40235 * 17 13 12 29 29 H 1.08998 * 109.50646 * 62.28511 * 17 13 12 30 30 H 1.09006 * 109.45826 * 294.17926 * 18 10 9 31 31 H 1.09003 * 109.46067 * 54.15415 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0464 -1.4002 5 1 1.4463 2.6528 0.6999 6 1 3.5465 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5115 -1.1938 -0.0056 10 7 4.0018 -2.5731 0.1173 11 6 3.5219 -3.1935 1.3587 12 6 4.1669 -4.5714 1.5246 13 6 3.8054 -5.4469 0.3215 14 6 4.4854 -6.7857 0.4488 15 8 5.2647 -7.1505 -0.3995 16 8 4.2255 -7.5729 1.5046 17 6 4.2732 -4.7553 -0.9620 18 6 3.6251 -3.3722 -1.0557 19 1 -0.4851 0.8400 -0.0004 20 1 3.8710 -0.7624 -0.9399 21 1 3.8783 -0.6018 0.8329 22 1 3.7891 -2.5630 2.2067 23 1 2.4383 -3.3027 1.3148 24 1 3.7985 -5.0381 2.4381 25 1 5.2498 -4.4616 1.5824 26 1 2.7253 -5.5889 0.2858 27 1 4.6860 -8.4223 1.5428 28 1 3.9807 -5.3535 -1.8250 29 1 5.3578 -4.6485 -0.9433 30 1 2.5409 -3.4805 -1.0883 31 1 3.9674 -2.8714 -1.9614 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000031945987.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:56 Heat of formation + Delta-G solvation = -100.450605 kcal Electronic energy + Delta-G solvation = -14532.816146 eV Core-core repulsion = 12006.595599 eV Total energy + Delta-G solvation = -2526.220547 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.40719 -38.09690 -36.09379 -33.80595 -32.01309 -30.36083 -27.81900 -24.92877 -22.65974 -22.11758 -20.62536 -19.18896 -17.97258 -16.86315 -16.58235 -15.64420 -14.93829 -14.35764 -14.10408 -13.63509 -13.29971 -13.05785 -12.71182 -12.29868 -11.94697 -11.52391 -11.32757 -11.10431 -11.05680 -10.73386 -10.50873 -10.30567 -10.07720 -10.00425 -9.82472 -9.51336 -8.62861 -7.24402 -6.13694 -4.14041 2.26896 3.11520 3.26219 3.33992 3.37375 4.37086 4.84007 4.86445 5.03606 5.19433 5.28230 5.56672 5.67738 5.92423 5.95870 6.05208 6.18150 6.23625 6.40863 6.47009 6.57253 6.69757 6.79852 6.94007 7.04765 7.52736 7.93619 8.01124 8.07627 8.40884 8.87832 9.49139 10.99090 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.062478 B = 0.007067 C = 0.006944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.048259 B = 3960.936004 C = 4031.345137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.072 3.928 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.553 4.553 8 H 0.075 0.925 9 C 0.152 3.848 10 N -0.537 5.537 11 C 0.063 3.937 12 C -0.105 4.105 13 C -0.080 4.080 14 C 0.485 3.515 15 O -0.520 6.520 16 O -0.517 6.517 17 C -0.099 4.099 18 C 0.061 3.939 19 H 0.264 0.736 20 H 0.025 0.975 21 H 0.032 0.968 22 H 0.071 0.929 23 H 0.049 0.951 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.106 0.894 27 H 0.404 0.596 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.045 0.955 31 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.528 -10.223 2.388 12.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.131 4.131 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.187 1.187 7 C -0.591 4.591 8 H 0.093 0.907 9 C 0.025 3.975 10 N -0.260 5.260 11 C -0.065 4.065 12 C -0.143 4.143 13 C -0.099 4.099 14 C 0.328 3.672 15 O -0.408 6.408 16 O -0.328 6.328 17 C -0.137 4.137 18 C -0.067 4.067 19 H 0.073 0.927 20 H 0.043 0.957 21 H 0.050 0.950 22 H 0.090 0.910 23 H 0.068 0.932 24 H 0.091 0.909 25 H 0.087 0.913 26 H 0.124 0.876 27 H 0.262 0.738 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.063 0.937 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.896 -9.797 2.157 12.766 hybrid contribution -0.361 0.291 -0.060 0.468 sum 7.535 -9.506 2.098 12.310 Atomic orbital electron populations 1.69922 1.06382 1.27056 1.50359 1.24975 0.94694 0.99263 0.94119 0.86800 0.80434 0.83525 0.78674 1.20189 1.21312 1.18734 1.21695 0.90697 0.94681 1.52047 0.90717 1.20211 0.94593 0.85685 0.96999 1.62398 1.58771 1.03738 1.01125 1.21873 0.98295 0.92703 0.93659 1.21646 1.01761 0.95595 0.95343 1.21203 1.01297 0.87766 0.99609 1.23845 0.79188 0.86583 0.77628 1.90685 1.34569 1.74176 1.41397 1.84593 1.67829 1.33479 1.46918 1.21565 1.01854 0.95907 0.94377 1.21911 0.98587 0.91732 0.94510 0.92652 0.95704 0.94986 0.91019 0.93240 0.90921 0.91294 0.87574 0.73826 0.91465 0.90761 0.93656 0.91023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.93 13.96 55.43 0.77 -26.15 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 3 Si 0.88 21.04 27.57 -169.99 -4.69 16.36 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.26 -6.05 6.40 56.52 0.36 -5.69 16 7 C -0.55 -14.95 8.27 -34.44 -0.28 -15.24 16 8 H 0.07 2.18 6.11 -52.49 -0.32 1.86 16 9 C 0.15 3.56 4.22 -4.98 -0.02 3.53 16 10 N -0.54 -10.82 4.86 -236.11 -1.15 -11.97 16 11 C 0.06 1.16 5.03 -3.83 -0.02 1.14 16 12 C -0.11 -1.55 5.32 -26.65 -0.14 -1.69 16 13 C -0.08 -1.15 2.69 -91.65 -0.25 -1.40 16 14 C 0.48 6.65 7.63 36.01 0.27 6.93 16 15 O -0.52 -8.45 16.73 -18.75 -0.31 -8.76 16 16 O -0.52 -5.58 13.36 -39.27 -0.52 -6.10 16 17 C -0.10 -1.55 4.68 -26.65 -0.12 -1.67 16 18 C 0.06 1.13 5.12 -3.84 -0.02 1.11 16 19 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 20 H 0.02 0.58 7.77 -51.93 -0.40 0.18 16 21 H 0.03 0.76 6.83 -51.93 -0.35 0.41 16 22 H 0.07 1.30 8.12 -51.93 -0.42 0.88 16 23 H 0.05 1.01 6.73 -51.93 -0.35 0.66 16 24 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 25 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.11 1.49 8.14 -51.93 -0.42 1.07 16 27 H 0.40 2.50 9.10 45.56 0.41 2.92 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.07 1.20 8.04 -51.93 -0.42 0.78 16 30 H 0.05 0.92 6.86 -51.93 -0.36 0.57 16 31 H 0.07 1.31 8.08 -51.93 -0.42 0.89 16 LS Contribution 254.03 15.07 3.83 3.83 Total: -1.00 -31.21 254.03 -6.25 -37.46 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -3.49 Total: 0.69 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -0.68 Total: -5.35 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: -0.37 Total: -38.12 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: -0.84 Total: -14.86 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.69 Total: 16.36 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -31.21 -6.25 -37.46 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031945987.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.994 kcal (2) G-P(sol) polarization free energy of solvation -31.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds