Wall clock time and date at job start Sun Mar 29 2020 22:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86812 * 119.99622 * 2 1 4 4 H 1.48504 * 109.46398 * 269.99457 * 3 2 1 5 5 H 1.48497 * 109.47048 * 29.99266 * 3 2 1 6 6 H 1.48496 * 109.46972 * 149.99477 * 3 2 1 7 7 C 1.37877 * 120.00517 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99852 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99867 * 179.72943 * 7 2 1 10 10 N 1.46901 * 109.46972 * 174.98547 * 9 7 2 11 11 C 1.46846 * 110.99940 * 300.72926 * 10 9 7 12 12 C 1.53043 * 109.52705 * 185.84048 * 11 10 9 13 13 C 1.53119 * 109.27293 * 300.82276 * 12 11 10 14 14 C 1.50707 * 109.57301 * 177.58893 * 13 12 11 15 15 O 1.20823 * 119.99784 * 240.28622 * 14 13 12 16 16 O 1.34236 * 119.99778 * 60.28208 * 14 13 12 17 17 C 1.53117 * 109.16405 * 57.65542 * 13 12 11 18 18 C 1.46846 * 111.00467 * 64.94028 * 10 9 7 19 19 H 0.97003 * 120.00586 * 0.02562 * 1 2 3 20 20 H 1.09003 * 109.46959 * 294.98231 * 9 7 2 21 21 H 1.08998 * 109.47508 * 54.98775 * 9 7 2 22 22 H 1.08998 * 109.46431 * 305.85781 * 11 10 9 23 23 H 1.09001 * 109.46282 * 65.82305 * 11 10 9 24 24 H 1.08994 * 109.50185 * 180.87989 * 12 11 10 25 25 H 1.08996 * 109.49882 * 60.75716 * 12 11 10 26 26 H 1.08997 * 109.52509 * 297.74499 * 13 12 11 27 27 H 0.96699 * 116.99617 * 180.02562 * 16 14 13 28 28 H 1.09002 * 109.50148 * 182.40235 * 17 13 12 29 29 H 1.08998 * 109.50646 * 62.28511 * 17 13 12 30 30 H 1.09006 * 109.45826 * 294.17926 * 18 10 9 31 31 H 1.09003 * 109.46067 * 54.15415 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0464 -1.4002 5 1 1.4463 2.6528 0.6999 6 1 3.5465 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5115 -1.1938 -0.0056 10 7 4.0018 -2.5731 0.1173 11 6 3.5219 -3.1935 1.3587 12 6 4.1669 -4.5714 1.5246 13 6 3.8054 -5.4469 0.3215 14 6 4.4854 -6.7857 0.4488 15 8 5.2647 -7.1505 -0.3995 16 8 4.2255 -7.5729 1.5046 17 6 4.2732 -4.7553 -0.9620 18 6 3.6251 -3.3722 -1.0557 19 1 -0.4851 0.8400 -0.0004 20 1 3.8710 -0.7624 -0.9399 21 1 3.8783 -0.6018 0.8329 22 1 3.7891 -2.5630 2.2067 23 1 2.4383 -3.3027 1.3148 24 1 3.7985 -5.0381 2.4381 25 1 5.2498 -4.4616 1.5824 26 1 2.7253 -5.5889 0.2858 27 1 4.6860 -8.4223 1.5428 28 1 3.9807 -5.3535 -1.8250 29 1 5.3578 -4.6485 -0.9433 30 1 2.5409 -3.4805 -1.0883 31 1 3.9674 -2.8714 -1.9614 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000031945987.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:55 Heat of formation + Delta-G solvation = -123.795103 kcal Electronic energy + Delta-G solvation = -14533.828439 eV Core-core repulsion = 12006.595599 eV Total energy + Delta-G solvation = -2527.232841 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.52089 -39.53352 -37.11020 -35.49225 -33.92345 -31.74891 -29.62172 -26.50070 -24.05723 -23.68578 -22.04906 -20.65382 -19.02847 -18.84968 -17.73478 -16.92873 -16.48500 -15.94701 -15.82720 -15.03815 -14.71285 -14.47054 -14.36969 -13.87934 -13.46345 -12.98739 -12.92780 -12.53536 -12.44386 -12.27869 -12.07267 -11.81195 -11.74958 -11.59054 -11.37773 -11.18036 -10.77748 -8.97979 -8.30011 -6.35126 1.19562 1.37926 1.39322 1.50697 2.12691 2.35515 3.05147 3.31192 3.64569 3.79046 4.09449 4.29371 4.46523 4.54692 4.62329 4.76025 4.81165 4.87228 5.02620 5.05874 5.15697 5.17040 5.24003 5.33399 5.53359 5.62653 6.11324 6.35660 6.44974 6.71835 7.02744 7.32253 8.85889 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.062478 B = 0.007067 C = 0.006944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.048259 B = 3960.936004 C = 4031.345137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.011 3.989 3 Si 0.947 3.053 4 H -0.269 1.269 5 H -0.286 1.286 6 H -0.244 1.244 7 C -0.549 4.549 8 H 0.038 0.962 9 C 0.157 3.843 10 N -0.534 5.534 11 C 0.063 3.937 12 C -0.092 4.092 13 C -0.082 4.082 14 C 0.499 3.501 15 O -0.546 6.546 16 O -0.508 6.508 17 C -0.088 4.088 18 C 0.063 3.937 19 H 0.265 0.735 20 H 0.028 0.972 21 H 0.035 0.965 22 H 0.072 0.928 23 H 0.020 0.980 24 H 0.095 0.905 25 H 0.077 0.923 26 H 0.108 0.892 27 H 0.427 0.573 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.018 0.982 31 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.337 -10.651 2.952 14.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.187 4.187 3 Si 0.771 3.229 4 H -0.194 1.194 5 H -0.212 1.212 6 H -0.167 1.167 7 C -0.588 4.588 8 H 0.057 0.943 9 C 0.030 3.970 10 N -0.257 5.257 11 C -0.066 4.066 12 C -0.130 4.130 13 C -0.102 4.102 14 C 0.342 3.658 15 O -0.437 6.437 16 O -0.321 6.321 17 C -0.126 4.126 18 C -0.065 4.065 19 H 0.074 0.926 20 H 0.046 0.954 21 H 0.053 0.947 22 H 0.091 0.909 23 H 0.039 0.961 24 H 0.113 0.887 25 H 0.095 0.905 26 H 0.126 0.874 27 H 0.289 0.711 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.037 0.963 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.724 -10.268 2.741 14.405 hybrid contribution -0.982 0.307 -0.205 1.049 sum 8.742 -9.961 2.536 13.494 Atomic orbital electron populations 1.70071 1.08320 1.28127 1.52288 1.25904 0.95483 1.03383 0.93910 0.85710 0.79612 0.78457 0.79152 1.19375 1.21181 1.16743 1.21927 0.92713 0.93302 1.50872 0.94337 1.20089 0.91876 0.87984 0.97095 1.62437 1.58180 1.02709 1.02385 1.21910 0.96875 0.94969 0.92804 1.21534 1.01856 0.93227 0.96412 1.21126 1.01606 0.88626 0.98799 1.23375 0.78323 0.86305 0.77753 1.90690 1.35724 1.74760 1.42505 1.84523 1.67774 1.34612 1.45227 1.21420 1.01420 0.94083 0.95705 1.21913 0.97200 0.93446 0.93982 0.92569 0.95353 0.94703 0.90944 0.96141 0.88696 0.90454 0.87397 0.71112 0.90463 0.90674 0.96337 0.91048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.19 13.96 21.45 0.30 -57.89 16 2 C 0.01 0.64 5.47 84.66 0.46 1.10 16 3 Si 0.95 43.11 27.57 68.60 1.89 45.00 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 6 H -0.24 -10.28 6.40 99.48 0.64 -9.64 16 7 C -0.55 -30.33 8.27 25.60 0.21 -30.12 16 8 H 0.04 2.36 6.11 -2.91 -0.02 2.34 16 9 C 0.16 7.27 4.22 85.56 0.36 7.63 16 10 N -0.53 -21.20 4.86 -900.92 -4.38 -25.58 16 11 C 0.06 2.27 5.03 86.33 0.43 2.70 16 12 C -0.09 -2.51 5.32 30.65 0.16 -2.35 16 13 C -0.08 -2.23 2.69 -11.46 -0.03 -2.26 16 14 C 0.50 12.36 7.63 71.24 0.54 12.91 16 15 O -0.55 -16.45 16.73 21.97 0.37 -16.08 16 16 O -0.51 -9.22 13.36 -51.47 -0.69 -9.91 16 17 C -0.09 -2.65 4.68 30.64 0.14 -2.50 16 18 C 0.06 2.33 5.12 86.32 0.44 2.77 16 19 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 20 H 0.03 1.30 7.77 -2.39 -0.02 1.28 16 21 H 0.03 1.60 6.83 -2.39 -0.02 1.58 16 22 H 0.07 2.57 8.12 -2.39 -0.02 2.55 16 23 H 0.02 0.85 6.73 -2.39 -0.02 0.84 16 24 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 25 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 27 H 0.43 3.73 9.10 -74.06 -0.67 3.05 16 28 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.07 2.27 8.04 -2.39 -0.02 2.25 16 30 H 0.02 0.78 6.86 -2.38 -0.02 0.76 16 31 H 0.07 2.60 8.08 -2.39 -0.02 2.58 16 Total: -1.00 -67.20 254.03 0.61 -66.59 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: 0.38 Total: 8.00 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: 2.73 Total: -10.13 kcal Atomic # 7 Polarization: -79.40 SS G_CDS: -4.08 Total: -83.47 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.32 Total: -25.99 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 1.89 Total: 45.00 kcal Total: -67.20 0.61 -66.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031945987.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.203 kcal (2) G-P(sol) polarization free energy of solvation -67.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds