Wall clock time and date at job start Sun Mar 29 2020 21:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32569 * 121.64525 * 2 1 4 4 S 1.77224 * 105.32034 * 180.19946 * 3 2 1 5 5 C 1.72207 * 94.84922 * 359.76409 * 4 3 2 6 6 O 1.21830 * 127.06225 * 180.02562 * 5 4 3 7 7 N 1.34250 * 105.88153 * 359.97438 * 5 4 3 8 8 C 1.46500 * 121.37798 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47473 * 90.02473 * 8 7 5 10 10 C 1.50701 * 109.47212 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47094 * 90.00289 * 14 12 10 16 16 H 1.48505 * 109.47195 * 210.00171 * 14 12 10 17 17 H 1.48493 * 109.47449 * 330.00136 * 14 12 10 18 18 H 1.09005 * 109.46993 * 270.24095 * 1 2 3 19 19 H 1.08997 * 109.47411 * 30.24085 * 1 2 3 20 20 H 1.08998 * 109.47078 * 150.24421 * 1 2 3 21 21 H 1.07999 * 127.33913 * 359.94086 * 3 2 1 22 22 H 1.09002 * 109.47129 * 330.02216 * 8 7 5 23 23 H 1.08998 * 109.46845 * 210.03023 * 8 7 5 24 24 H 1.09002 * 109.47153 * 59.99757 * 9 8 7 25 25 H 1.09001 * 109.46832 * 299.99948 * 9 8 7 26 26 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2025 1.1286 0.0000 4 16 3.9033 0.6304 -0.0060 5 6 3.5607 -1.0572 -0.0010 6 8 4.3674 -1.9702 -0.0019 7 7 2.2222 -1.1603 0.0054 8 6 1.5577 -2.4660 0.0105 9 6 1.3325 -2.9180 1.4547 10 6 0.6484 -4.2608 1.4599 11 1 0.3996 -4.7437 0.5265 12 6 0.3411 -4.8733 2.6564 13 7 0.6445 -4.2854 3.7930 14 14 -0.5061 -6.5380 2.6628 15 1 0.5171 -7.6142 2.6599 16 1 -1.3491 -6.6598 3.8793 17 1 -1.3600 -6.6636 1.4544 18 1 -0.3633 0.0043 1.0277 19 1 -0.3634 0.8878 -0.5175 20 1 -0.3633 -0.8921 -0.5100 21 1 1.8152 2.1367 -0.0009 22 1 2.1840 -3.1944 -0.5047 23 1 0.5977 -2.3870 -0.4995 24 1 0.7063 -2.1896 1.9699 25 1 2.2926 -2.9969 1.9646 26 1 0.4280 -4.7162 4.6347 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034670469.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:30 Heat of formation + Delta-G solvation = -16.200602 kcal Electronic energy + Delta-G solvation = -12052.798882 eV Core-core repulsion = 9837.151465 eV Total energy + Delta-G solvation = -2215.647417 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.056 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.48553 -37.13501 -33.79430 -32.02921 -30.47297 -27.74711 -25.06288 -23.26203 -21.52315 -19.69211 -17.71208 -16.91312 -16.00683 -15.62399 -14.61993 -14.49343 -14.06469 -13.39313 -13.34945 -13.00202 -12.46100 -12.20738 -11.68948 -11.14724 -11.01921 -10.88541 -10.73091 -10.17260 -10.06088 -9.65809 -9.29810 -8.93719 -8.48366 -7.58877 -6.12657 -4.17865 1.33764 1.70263 2.13179 2.63544 3.26134 3.27342 3.33020 3.35719 4.36296 4.87704 5.23658 5.26917 5.48847 5.62177 5.71979 5.88038 5.99425 6.20526 6.50383 6.54130 7.15548 7.46625 7.58104 7.75536 7.85294 8.19358 8.87494 9.47277 10.98658 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.048440 B = 0.008036 C = 0.007473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.891198 B = 3483.577571 C = 3745.723511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.122 3.878 3 C -0.261 4.261 4 S -0.037 6.037 5 C 0.486 3.514 6 O -0.473 6.473 7 N -0.526 5.526 8 C 0.100 3.900 9 C 0.014 3.986 10 C -0.527 4.527 11 H 0.059 0.941 12 C 0.061 3.939 13 N -0.890 5.890 14 Si 0.898 3.102 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.272 1.272 18 H 0.089 0.911 19 H 0.083 0.917 20 H 0.081 0.919 21 H 0.186 0.814 22 H 0.083 0.917 23 H 0.083 0.917 24 H 0.023 0.977 25 H 0.023 0.977 26 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.136 10.484 -7.515 12.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.009 3.991 3 C -0.399 4.399 4 S 0.205 5.795 5 C 0.167 3.833 6 O -0.353 6.353 7 N -0.244 5.244 8 C -0.023 4.023 9 C -0.023 4.023 10 C -0.565 4.565 11 H 0.077 0.923 12 C -0.141 4.141 13 N -0.528 5.528 14 Si 0.725 3.275 15 H -0.205 1.205 16 H -0.211 1.211 17 H -0.197 1.197 18 H 0.108 0.892 19 H 0.101 0.899 20 H 0.099 0.901 21 H 0.203 0.797 22 H 0.101 0.899 23 H 0.101 0.899 24 H 0.041 0.959 25 H 0.041 0.959 26 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.536 10.500 -7.333 12.818 hybrid contribution -1.601 -1.604 0.240 2.279 sum -1.065 8.895 -7.093 11.427 Atomic orbital electron populations 1.20803 0.86876 1.03928 1.04453 1.19531 0.95994 0.85144 0.98386 1.24654 0.92665 1.00956 1.21664 1.84770 1.09599 1.03199 1.81970 1.21415 0.84197 0.94878 0.82761 1.90936 1.48812 1.42211 1.53359 1.46383 1.06216 1.08950 1.62891 1.22429 0.96776 0.79750 1.03363 1.19399 0.97906 0.96734 0.88311 1.20993 1.39392 1.03420 0.92725 0.92264 1.24999 0.95684 0.97952 0.95474 1.69969 1.46854 1.38603 0.97419 0.86505 0.79481 0.83910 0.77597 1.20488 1.21100 1.19724 0.89228 0.89858 0.90055 0.79725 0.89894 0.89897 0.95915 0.95891 0.92722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.21 9.69 36.00 0.35 -0.86 15 2 C 0.12 1.84 6.59 -82.51 -0.54 1.29 15 3 C -0.26 -3.46 11.25 28.83 0.32 -3.14 15 4 S -0.04 -0.59 22.97 -107.50 -2.47 -3.05 15 5 C 0.49 9.82 8.27 53.82 0.45 10.26 15 6 O -0.47 -11.14 17.55 5.07 0.09 -11.05 15 7 N -0.53 -9.88 2.60 -117.28 -0.31 -10.19 15 8 C 0.10 2.04 5.21 -4.04 -0.02 2.02 15 9 C 0.01 0.36 5.30 -27.88 -0.15 0.22 15 10 C -0.53 -14.44 9.11 -34.44 -0.31 -14.75 15 11 H 0.06 1.55 7.74 -52.49 -0.41 1.14 15 12 C 0.06 1.72 5.46 -17.82 -0.10 1.63 15 13 N -0.89 -26.43 13.29 55.43 0.74 -25.70 15 14 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 15 15 H -0.28 -6.58 7.11 56.52 0.40 -6.17 15 16 H -0.29 -6.65 7.11 56.52 0.40 -6.25 15 17 H -0.27 -6.21 7.11 56.52 0.40 -5.81 15 18 H 0.09 1.11 8.14 -51.93 -0.42 0.69 15 19 H 0.08 0.71 8.10 -51.93 -0.42 0.29 15 20 H 0.08 0.99 6.18 -51.93 -0.32 0.67 15 21 H 0.19 1.75 8.06 -52.49 -0.42 1.33 15 22 H 0.08 1.77 7.80 -51.93 -0.41 1.37 15 23 H 0.08 1.47 6.11 -51.93 -0.32 1.16 15 24 H 0.02 0.59 8.14 -51.93 -0.42 0.17 15 25 H 0.02 0.66 8.14 -51.93 -0.42 0.24 15 26 H 0.26 7.36 8.31 -40.82 -0.34 7.02 15 LS Contribution 244.88 15.07 3.69 3.69 Total: -1.00 -31.65 244.88 -5.98 -37.63 By element: Atomic # 1 Polarization: -1.46 SS G_CDS: -2.70 Total: -4.16 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: 0.00 Total: -3.33 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.43 Total: -35.88 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.09 Total: -11.05 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -0.59 SS G_CDS: -2.47 Total: -3.05 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -31.65 -5.98 -37.63 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034670469.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.428 kcal (2) G-P(sol) polarization free energy of solvation -31.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds