Wall clock time and date at job start Sun Mar 29 2020 21:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32569 * 121.64525 * 2 1 4 4 S 1.77224 * 105.32034 * 180.19946 * 3 2 1 5 5 C 1.72207 * 94.84922 * 359.76409 * 4 3 2 6 6 O 1.21830 * 127.06225 * 180.02562 * 5 4 3 7 7 N 1.34250 * 105.88153 * 359.97438 * 5 4 3 8 8 C 1.46500 * 121.37798 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47473 * 90.02473 * 8 7 5 10 10 C 1.50701 * 109.47212 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47094 * 90.00289 * 14 12 10 16 16 H 1.48505 * 109.47195 * 210.00171 * 14 12 10 17 17 H 1.48493 * 109.47449 * 330.00136 * 14 12 10 18 18 H 1.09005 * 109.46993 * 270.24095 * 1 2 3 19 19 H 1.08997 * 109.47411 * 30.24085 * 1 2 3 20 20 H 1.08998 * 109.47078 * 150.24421 * 1 2 3 21 21 H 1.07999 * 127.33913 * 359.94086 * 3 2 1 22 22 H 1.09002 * 109.47129 * 330.02216 * 8 7 5 23 23 H 1.08998 * 109.46845 * 210.03023 * 8 7 5 24 24 H 1.09002 * 109.47153 * 59.99757 * 9 8 7 25 25 H 1.09001 * 109.46832 * 299.99948 * 9 8 7 26 26 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2025 1.1286 0.0000 4 16 3.9033 0.6304 -0.0060 5 6 3.5607 -1.0572 -0.0010 6 8 4.3674 -1.9702 -0.0019 7 7 2.2222 -1.1603 0.0054 8 6 1.5577 -2.4660 0.0105 9 6 1.3325 -2.9180 1.4547 10 6 0.6484 -4.2608 1.4599 11 1 0.3996 -4.7437 0.5265 12 6 0.3411 -4.8733 2.6564 13 7 0.6445 -4.2854 3.7930 14 14 -0.5061 -6.5380 2.6628 15 1 0.5171 -7.6142 2.6599 16 1 -1.3491 -6.6598 3.8793 17 1 -1.3600 -6.6636 1.4544 18 1 -0.3633 0.0043 1.0277 19 1 -0.3634 0.8878 -0.5175 20 1 -0.3633 -0.8921 -0.5100 21 1 1.8152 2.1367 -0.0009 22 1 2.1840 -3.1944 -0.5047 23 1 0.5977 -2.3870 -0.4995 24 1 0.7063 -2.1896 1.9699 25 1 2.2926 -2.9969 1.9646 26 1 0.4280 -4.7162 4.6347 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034670469.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:30 Heat of formation + Delta-G solvation = -37.119418 kcal Electronic energy + Delta-G solvation = -12053.705990 eV Core-core repulsion = 9837.151465 eV Total energy + Delta-G solvation = -2216.554524 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.056 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.90556 -38.63439 -35.75594 -33.67529 -31.99705 -29.21747 -26.74922 -24.86091 -23.24851 -21.17335 -19.01520 -18.82755 -17.67327 -17.22662 -16.45407 -16.04561 -15.41737 -14.77730 -14.63848 -14.46404 -14.28774 -13.71121 -13.17600 -12.85360 -12.78139 -12.37596 -12.14275 -11.98101 -11.81737 -11.51640 -11.07977 -10.64342 -10.42820 -8.89862 -8.27360 -6.40999 -0.07491 0.41842 0.90551 1.23456 1.39902 1.41936 1.52746 1.92192 2.38434 3.07284 3.71092 3.97025 4.31203 4.35101 4.62132 4.62992 4.79072 4.81176 4.96347 5.30937 5.34992 5.40194 5.69933 5.90233 6.05180 6.33789 6.74211 7.29698 8.85068 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.048440 B = 0.008036 C = 0.007473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.891198 B = 3483.577571 C = 3745.723511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.089 3.911 3 C -0.228 4.228 4 S 0.003 5.997 5 C 0.452 3.548 6 O -0.532 6.532 7 N -0.532 5.532 8 C 0.115 3.885 9 C 0.026 3.974 10 C -0.545 4.545 11 H 0.071 0.929 12 C 0.003 3.997 13 N -0.932 5.932 14 Si 0.972 3.028 15 H -0.278 1.278 16 H -0.280 1.280 17 H -0.254 1.254 18 H 0.081 0.919 19 H 0.126 0.874 20 H 0.075 0.925 21 H 0.236 0.764 22 H 0.067 0.933 23 H 0.115 0.885 24 H 0.010 0.990 25 H -0.028 1.028 26 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.838 11.856 -8.588 14.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.021 4.021 3 C -0.365 4.365 4 S 0.246 5.754 5 C 0.136 3.864 6 O -0.417 6.417 7 N -0.251 5.251 8 C -0.009 4.009 9 C -0.012 4.012 10 C -0.583 4.583 11 H 0.090 0.910 12 C -0.195 4.195 13 N -0.572 5.572 14 Si 0.795 3.205 15 H -0.204 1.204 16 H -0.206 1.206 17 H -0.178 1.178 18 H 0.100 0.900 19 H 0.145 0.855 20 H 0.094 0.906 21 H 0.252 0.748 22 H 0.085 0.915 23 H 0.133 0.867 24 H 0.028 0.972 25 H -0.010 1.010 26 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.197 11.933 -8.426 14.657 hybrid contribution -1.040 -1.860 0.583 2.210 sum -2.237 10.073 -7.843 12.960 Atomic orbital electron populations 1.20908 0.84384 1.05805 1.04467 1.20141 0.97629 0.84231 1.00070 1.25413 0.90528 1.02427 1.18089 1.84637 1.11410 0.98714 1.80653 1.22150 0.84444 0.96641 0.83199 1.90884 1.50269 1.44648 1.55905 1.46409 1.06222 1.09530 1.62935 1.22027 0.98143 0.80851 0.99892 1.19171 0.94655 0.96361 0.90970 1.21467 1.39150 1.04294 0.93374 0.91045 1.26006 0.96344 1.02189 0.94994 1.70112 1.48240 1.40645 0.98197 0.85348 0.78381 0.78379 0.78349 1.20432 1.20566 1.17778 0.90040 0.85518 0.90639 0.74790 0.91486 0.86681 0.97170 1.00989 0.92585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.00 9.69 71.24 0.69 -1.31 15 2 C 0.09 2.48 6.59 40.71 0.27 2.74 15 3 C -0.23 -5.12 11.25 66.67 0.75 -4.37 15 4 S 0.00 0.10 22.97 -56.49 -1.30 -1.20 15 5 C 0.45 18.66 8.27 129.87 1.07 19.74 15 6 O -0.53 -26.51 17.55 -4.76 -0.08 -26.59 15 7 N -0.53 -20.01 2.60 -643.42 -1.68 -21.68 15 8 C 0.11 4.78 5.21 86.38 0.45 5.23 15 9 C 0.03 1.39 5.30 29.85 0.16 1.55 15 10 C -0.54 -30.28 9.11 25.60 0.23 -30.05 15 11 H 0.07 3.70 7.74 -2.91 -0.02 3.68 15 12 C 0.00 0.18 5.46 84.66 0.46 0.64 15 13 N -0.93 -56.70 13.29 21.45 0.28 -56.41 15 14 Si 0.97 43.42 29.54 68.60 2.03 45.45 15 15 H -0.28 -12.36 7.11 99.48 0.71 -11.65 15 16 H -0.28 -12.21 7.11 99.48 0.71 -11.50 15 17 H -0.25 -10.53 7.11 99.48 0.71 -9.82 15 18 H 0.08 1.84 8.14 -2.38 -0.02 1.82 15 19 H 0.13 1.50 8.10 -2.39 -0.02 1.48 15 20 H 0.07 1.65 6.18 -2.39 -0.01 1.64 15 21 H 0.24 2.90 8.06 -2.91 -0.02 2.88 15 22 H 0.07 2.98 7.80 -2.39 -0.02 2.96 15 23 H 0.12 3.99 6.11 -2.39 -0.01 3.98 15 24 H 0.01 0.54 8.14 -2.39 -0.02 0.52 15 25 H -0.03 -1.77 8.14 -2.39 -0.02 -1.79 15 26 H 0.27 15.13 8.31 -92.71 -0.77 14.36 15 Total: -1.00 -72.22 244.88 4.52 -67.70 By element: Atomic # 1 Polarization: -2.62 SS G_CDS: 1.18 Total: -1.44 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: 4.09 Total: -5.83 kcal Atomic # 7 Polarization: -76.70 SS G_CDS: -1.39 Total: -78.09 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -0.08 Total: -26.59 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 16 Polarization: 0.10 SS G_CDS: -1.30 Total: -1.20 kcal Total: -72.22 4.52 -67.70 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034670469.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.584 kcal (2) G-P(sol) polarization free energy of solvation -72.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds