Wall clock time and date at job start Sun Mar 29 2020 22:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00458 * 2 1 4 4 H 1.48503 * 109.46812 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.46952 * 120.00145 * 3 2 1 6 6 H 1.48498 * 109.47346 * 240.00848 * 3 2 1 7 7 C 1.37887 * 119.99601 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99414 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00019 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.47037 * 180.02562 * 9 7 2 11 11 C 1.46846 * 111.00248 * 75.54459 * 10 9 7 12 12 C 1.53033 * 109.52398 * 185.84105 * 11 10 9 13 13 C 1.53118 * 109.28005 * 300.82056 * 12 11 10 14 14 C 1.53127 * 109.16169 * 57.65211 * 13 12 11 15 15 C 1.46846 * 111.00135 * 199.75678 * 10 9 7 16 16 H 1.09000 * 109.46115 * 294.17918 * 15 10 9 17 17 C 1.50706 * 109.46313 * 54.14219 * 15 10 9 18 18 O 1.20823 * 119.99999 * 28.77616 * 17 15 10 19 19 O 1.34231 * 119.99844 * 208.77987 * 17 15 10 20 20 H 0.96995 * 120.00282 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.47178 * 300.00346 * 9 7 2 22 22 H 1.09002 * 109.47401 * 60.00396 * 9 7 2 23 23 H 1.09001 * 109.46113 * 305.85812 * 11 10 9 24 24 H 1.08996 * 109.46184 * 65.83315 * 11 10 9 25 25 H 1.08999 * 109.50675 * 60.75902 * 12 11 10 26 26 H 1.09000 * 109.50281 * 180.83830 * 12 11 10 27 27 H 1.08995 * 109.52917 * 177.56023 * 13 12 11 28 28 H 1.09007 * 109.52259 * 297.75155 * 13 12 11 29 29 H 1.08998 * 109.49510 * 62.29031 * 14 13 12 30 30 H 1.08997 * 109.50306 * 182.36441 * 14 13 12 31 31 H 0.96700 * 117.00014 * 179.97438 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 1.2843 2.7464 0.0006 5 1 3.1030 1.6962 1.2125 6 1 3.1029 1.6964 -1.2126 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 2.8076 -3.7935 1.3270 12 6 3.8982 -4.8646 1.2547 13 6 3.2827 -6.1811 0.7725 14 6 2.6202 -5.9571 -0.5897 15 6 1.5668 -4.8542 -0.4639 16 1 0.8046 -5.1599 0.2528 17 6 0.9259 -4.6165 -1.8071 18 8 1.3824 -3.7852 -2.5556 19 8 -0.1521 -5.3283 -2.1717 20 1 -0.4850 -0.8400 0.0004 21 1 0.6246 -2.5571 0.8896 22 1 0.6240 -2.5568 -0.8903 23 1 3.2453 -2.8511 1.6563 24 1 2.0398 -4.1044 2.0353 25 1 4.6734 -4.5483 0.5568 26 1 4.3347 -5.0068 2.2433 27 1 4.0637 -6.9355 0.6781 28 1 2.5346 -6.5179 1.4903 29 1 3.3753 -5.6579 -1.3166 30 1 2.1438 -6.8805 -0.9190 31 1 -0.5285 -5.1402 -3.0424 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034999659.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:57 Heat of formation + Delta-G solvation = -97.907980 kcal Electronic energy + Delta-G solvation = -14903.816543 eV Core-core repulsion = 12377.706252 eV Total energy + Delta-G solvation = -2526.110291 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.16898 -37.95654 -35.61976 -33.88176 -31.93626 -30.94615 -26.74891 -24.50569 -23.59296 -21.72844 -20.86176 -19.24923 -17.65102 -16.79100 -16.35702 -15.29216 -14.97469 -14.26737 -13.88806 -13.66928 -13.30266 -13.10269 -12.81277 -12.36967 -11.81950 -11.44366 -11.11500 -11.01364 -10.90921 -10.71709 -10.56241 -10.37097 -10.07915 -9.98819 -9.63628 -8.69971 -8.31252 -7.43832 -6.31786 -3.99032 2.68445 3.31016 3.47562 3.51965 3.69438 4.50564 4.68836 4.98024 5.11701 5.18011 5.41216 5.46728 5.52171 5.72706 5.85116 5.89409 6.03563 6.10275 6.12328 6.28044 6.56115 6.58751 6.83650 6.95668 6.98180 7.70747 7.90552 8.25683 8.40159 8.62347 8.90886 9.70260 11.07012 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.030843 B = 0.010702 C = 0.008647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.603225 B = 2615.686457 C = 3237.391032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.012 3.988 3 Si 1.074 2.926 4 H -0.284 1.284 5 H -0.288 1.288 6 H -0.287 1.287 7 C -0.577 4.577 8 H 0.058 0.942 9 C 0.177 3.823 10 N -0.511 5.511 11 C 0.068 3.932 12 C -0.120 4.120 13 C -0.115 4.115 14 C -0.105 4.105 15 C 0.096 3.904 16 H 0.059 0.941 17 C 0.476 3.524 18 O -0.478 6.478 19 O -0.527 6.527 20 H 0.264 0.736 21 H -0.019 1.019 22 H 0.024 0.976 23 H 0.089 0.911 24 H 0.023 0.977 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.690 -12.436 0.743 12.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.191 4.191 3 Si 0.902 3.098 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.214 1.214 7 C -0.615 4.615 8 H 0.076 0.924 9 C 0.052 3.948 10 N -0.238 5.238 11 C -0.060 4.060 12 C -0.158 4.158 13 C -0.153 4.153 14 C -0.143 4.143 15 C -0.014 4.014 16 H 0.076 0.924 17 C 0.316 3.684 18 O -0.361 6.361 19 O -0.340 6.340 20 H 0.074 0.926 21 H -0.001 1.001 22 H 0.042 0.958 23 H 0.108 0.892 24 H 0.041 0.959 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 4.172 -10.503 0.581 11.316 hybrid contribution -0.858 -1.728 -0.100 1.932 sum 3.314 -12.230 0.481 12.681 Atomic orbital electron populations 1.70800 1.06892 1.30137 1.47436 1.25870 0.96495 1.02723 0.94019 0.83473 0.74768 0.75018 0.76539 1.20895 1.21465 1.21356 1.21867 0.94832 0.90518 1.54300 0.92384 1.19988 0.90681 0.89191 0.94903 1.61895 1.34577 1.01596 1.25695 1.21999 0.95700 0.99547 0.88751 1.21672 0.98721 0.94495 1.00944 1.21545 0.99746 0.97896 0.96083 1.21542 0.97680 0.96061 0.99023 1.21156 0.95478 0.94389 0.90364 0.92355 1.23363 0.77566 0.77846 0.89667 1.90767 1.61483 1.30911 1.52977 1.84526 1.44628 1.63287 1.41527 0.92610 1.00099 0.95844 0.89232 0.95930 0.91028 0.91831 0.91643 0.92186 0.90456 0.91330 0.73799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.85 13.65 55.43 0.76 -28.10 16 2 C 0.01 0.35 5.46 -17.82 -0.10 0.26 16 3 Si 1.07 26.23 29.90 -169.99 -5.08 21.15 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.58 -17.05 8.61 -34.44 -0.30 -17.35 16 8 H 0.06 1.72 7.74 -52.49 -0.41 1.31 16 9 C 0.18 4.79 3.67 -4.98 -0.02 4.77 16 10 N -0.51 -11.40 4.17 -229.52 -0.96 -12.35 16 11 C 0.07 1.29 5.29 -3.84 -0.02 1.27 16 12 C -0.12 -1.77 6.09 -26.65 -0.16 -1.93 16 13 C -0.12 -1.47 6.00 -26.60 -0.16 -1.63 16 14 C -0.11 -1.54 5.36 -26.65 -0.14 -1.68 16 15 C 0.10 1.80 2.34 -68.87 -0.16 1.64 16 16 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 17 C 0.48 9.37 6.13 36.01 0.22 9.59 16 18 O -0.48 -11.38 16.19 -18.75 -0.30 -11.68 16 19 O -0.53 -8.15 13.42 -39.26 -0.53 -8.67 16 20 H 0.26 8.33 7.22 -40.82 -0.29 8.03 16 21 H -0.02 -0.52 7.87 -51.93 -0.41 -0.93 16 22 H 0.02 0.69 5.54 -51.93 -0.29 0.40 16 23 H 0.09 1.86 7.45 -51.93 -0.39 1.47 16 24 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.40 4.46 9.10 45.56 0.41 4.88 16 LS Contribution 257.67 15.07 3.88 3.88 Total: -1.00 -34.73 257.67 -6.62 -41.34 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -3.55 Total: -0.50 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -0.84 Total: -5.07 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: -0.20 Total: -40.45 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.83 Total: -20.35 kcal Atomic # 14 Polarization: 26.23 SS G_CDS: -5.08 Total: 21.15 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -34.73 -6.62 -41.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034999659.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.565 kcal (2) G-P(sol) polarization free energy of solvation -34.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds