Wall clock time and date at job start Sun Mar 29 2020 22:03:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86801 * 120.00458 * 2 1
4 4 H 1.48503 * 109.46812 * 0.02562 * 3 2 1
5 5 H 1.48498 * 109.46952 * 120.00145 * 3 2 1
6 6 H 1.48498 * 109.47346 * 240.00848 * 3 2 1
7 7 C 1.37887 * 119.99601 * 180.02562 * 2 1 3
8 8 H 1.07999 * 119.99414 * 179.97438 * 7 2 1
9 9 C 1.50694 * 120.00019 * 359.97438 * 7 2 1
10 10 N 1.46902 * 109.47037 * 180.02562 * 9 7 2
11 11 C 1.46846 * 111.00248 * 75.54459 * 10 9 7
12 12 C 1.53033 * 109.52398 * 185.84105 * 11 10 9
13 13 C 1.53118 * 109.28005 * 300.82056 * 12 11 10
14 14 C 1.53127 * 109.16169 * 57.65211 * 13 12 11
15 15 C 1.46846 * 111.00135 * 199.75678 * 10 9 7
16 16 H 1.09000 * 109.46115 * 294.17918 * 15 10 9
17 17 C 1.50706 * 109.46313 * 54.14219 * 15 10 9
18 18 O 1.20823 * 119.99999 * 28.77616 * 17 15 10
19 19 O 1.34231 * 119.99844 * 208.77987 * 17 15 10
20 20 H 0.96995 * 120.00282 * 180.02562 * 1 2 3
21 21 H 1.08999 * 109.47178 * 300.00346 * 9 7 2
22 22 H 1.09002 * 109.47401 * 60.00396 * 9 7 2
23 23 H 1.09001 * 109.46113 * 305.85812 * 11 10 9
24 24 H 1.08996 * 109.46184 * 65.83315 * 11 10 9
25 25 H 1.08999 * 109.50675 * 60.75902 * 12 11 10
26 26 H 1.09000 * 109.50281 * 180.83830 * 12 11 10
27 27 H 1.08995 * 109.52917 * 177.56023 * 13 12 11
28 28 H 1.09007 * 109.52259 * 297.75155 * 13 12 11
29 29 H 1.08998 * 109.49510 * 62.29031 * 14 13 12
30 30 H 1.08997 * 109.50306 * 182.36441 * 14 13 12
31 31 H 0.96700 * 117.00014 * 179.97438 * 19 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2493 1.6177 0.0000
4 1 1.2843 2.7464 0.0006
5 1 3.1030 1.6962 1.2125
6 1 3.1029 1.6964 -1.2126
7 6 2.0045 -1.1942 -0.0005
8 1 3.0845 -1.1941 -0.0010
9 6 1.2509 -2.4992 -0.0005
10 7 2.2055 -3.6158 -0.0005
11 6 2.8076 -3.7935 1.3270
12 6 3.8982 -4.8646 1.2547
13 6 3.2827 -6.1811 0.7725
14 6 2.6202 -5.9571 -0.5897
15 6 1.5668 -4.8542 -0.4639
16 1 0.8046 -5.1599 0.2528
17 6 0.9259 -4.6165 -1.8071
18 8 1.3824 -3.7852 -2.5556
19 8 -0.1521 -5.3283 -2.1717
20 1 -0.4850 -0.8400 0.0004
21 1 0.6246 -2.5571 0.8896
22 1 0.6240 -2.5568 -0.8903
23 1 3.2453 -2.8511 1.6563
24 1 2.0398 -4.1044 2.0353
25 1 4.6734 -4.5483 0.5568
26 1 4.3347 -5.0068 2.2433
27 1 4.0637 -6.9355 0.6781
28 1 2.5346 -6.5179 1.4903
29 1 3.3753 -5.6579 -1.3166
30 1 2.1438 -6.8805 -0.9190
31 1 -0.5285 -5.1402 -3.0424
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000034999659.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:03:57
Heat of formation + Delta-G solvation = -97.907980 kcal
Electronic energy + Delta-G solvation = -14903.816543 eV
Core-core repulsion = 12377.706252 eV
Total energy + Delta-G solvation = -2526.110291 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 213.115 amu
Computer time = 0.18 seconds
Orbital eigenvalues (eV)
-40.16898 -37.95654 -35.61976 -33.88176 -31.93626 -30.94615 -26.74891 -24.50569
-23.59296 -21.72844 -20.86176 -19.24923 -17.65102 -16.79100 -16.35702 -15.29216
-14.97469 -14.26737 -13.88806 -13.66928 -13.30266 -13.10269 -12.81277 -12.36967
-11.81950 -11.44366 -11.11500 -11.01364 -10.90921 -10.71709 -10.56241 -10.37097
-10.07915 -9.98819 -9.63628 -8.69971 -8.31252 -7.43832 -6.31786 -3.99032
2.68445 3.31016 3.47562 3.51965 3.69438 4.50564 4.68836 4.98024
5.11701 5.18011 5.41216 5.46728 5.52171 5.72706 5.85116 5.89409
6.03563 6.10275 6.12328 6.28044 6.56115 6.58751 6.83650 6.95668
6.98180 7.70747 7.90552 8.25683 8.40159 8.62347 8.90886 9.70260
11.07012
Molecular weight = 213.12amu
Principal moments of inertia in cm(-1)
A = 0.030843 B = 0.010702 C = 0.008647
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 907.603225 B = 2615.686457 C = 3237.391032
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.916 5.916
2 C 0.012 3.988
3 Si 1.074 2.926
4 H -0.284 1.284
5 H -0.288 1.288
6 H -0.287 1.287
7 C -0.577 4.577
8 H 0.058 0.942
9 C 0.177 3.823
10 N -0.511 5.511
11 C 0.068 3.932
12 C -0.120 4.120
13 C -0.115 4.115
14 C -0.105 4.105
15 C 0.096 3.904
16 H 0.059 0.941
17 C 0.476 3.524
18 O -0.478 6.478
19 O -0.527 6.527
20 H 0.264 0.736
21 H -0.019 1.019
22 H 0.024 0.976
23 H 0.089 0.911
24 H 0.023 0.977
25 H 0.071 0.929
26 H 0.063 0.937
27 H 0.065 0.935
28 H 0.059 0.941
29 H 0.077 0.923
30 H 0.068 0.932
31 H 0.404 0.596
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.690 -12.436 0.743 12.993
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.553 5.553
2 C -0.191 4.191
3 Si 0.902 3.098
4 H -0.209 1.209
5 H -0.215 1.215
6 H -0.214 1.214
7 C -0.615 4.615
8 H 0.076 0.924
9 C 0.052 3.948
10 N -0.238 5.238
11 C -0.060 4.060
12 C -0.158 4.158
13 C -0.153 4.153
14 C -0.143 4.143
15 C -0.014 4.014
16 H 0.076 0.924
17 C 0.316 3.684
18 O -0.361 6.361
19 O -0.340 6.340
20 H 0.074 0.926
21 H -0.001 1.001
22 H 0.042 0.958
23 H 0.108 0.892
24 H 0.041 0.959
25 H 0.090 0.910
26 H 0.082 0.918
27 H 0.084 0.916
28 H 0.078 0.922
29 H 0.095 0.905
30 H 0.087 0.913
31 H 0.262 0.738
Dipole moment (debyes) X Y Z Total
from point charges 4.172 -10.503 0.581 11.316
hybrid contribution -0.858 -1.728 -0.100 1.932
sum 3.314 -12.230 0.481 12.681
Atomic orbital electron populations
1.70800 1.06892 1.30137 1.47436 1.25870 0.96495 1.02723 0.94019
0.83473 0.74768 0.75018 0.76539 1.20895 1.21465 1.21356 1.21867
0.94832 0.90518 1.54300 0.92384 1.19988 0.90681 0.89191 0.94903
1.61895 1.34577 1.01596 1.25695 1.21999 0.95700 0.99547 0.88751
1.21672 0.98721 0.94495 1.00944 1.21545 0.99746 0.97896 0.96083
1.21542 0.97680 0.96061 0.99023 1.21156 0.95478 0.94389 0.90364
0.92355 1.23363 0.77566 0.77846 0.89667 1.90767 1.61483 1.30911
1.52977 1.84526 1.44628 1.63287 1.41527 0.92610 1.00099 0.95844
0.89232 0.95930 0.91028 0.91831 0.91643 0.92186 0.90456 0.91330
0.73799
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -28.85 13.65 55.43 0.76 -28.10 16
2 C 0.01 0.35 5.46 -17.82 -0.10 0.26 16
3 Si 1.07 26.23 29.90 -169.99 -5.08 21.15 16
4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16
5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16
6 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16
7 C -0.58 -17.05 8.61 -34.44 -0.30 -17.35 16
8 H 0.06 1.72 7.74 -52.49 -0.41 1.31 16
9 C 0.18 4.79 3.67 -4.98 -0.02 4.77 16
10 N -0.51 -11.40 4.17 -229.52 -0.96 -12.35 16
11 C 0.07 1.29 5.29 -3.84 -0.02 1.27 16
12 C -0.12 -1.77 6.09 -26.65 -0.16 -1.93 16
13 C -0.12 -1.47 6.00 -26.60 -0.16 -1.63 16
14 C -0.11 -1.54 5.36 -26.65 -0.14 -1.68 16
15 C 0.10 1.80 2.34 -68.87 -0.16 1.64 16
16 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16
17 C 0.48 9.37 6.13 36.01 0.22 9.59 16
18 O -0.48 -11.38 16.19 -18.75 -0.30 -11.68 16
19 O -0.53 -8.15 13.42 -39.26 -0.53 -8.67 16
20 H 0.26 8.33 7.22 -40.82 -0.29 8.03 16
21 H -0.02 -0.52 7.87 -51.93 -0.41 -0.93 16
22 H 0.02 0.69 5.54 -51.93 -0.29 0.40 16
23 H 0.09 1.86 7.45 -51.93 -0.39 1.47 16
24 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16
25 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16
26 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16
27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16
29 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16
30 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16
31 H 0.40 4.46 9.10 45.56 0.41 4.88 16
LS Contribution 257.67 15.07 3.88 3.88
Total: -1.00 -34.73 257.67 -6.62 -41.34
By element:
Atomic # 1 Polarization: 3.04 SS G_CDS: -3.55 Total: -0.50 kcal
Atomic # 6 Polarization: -4.23 SS G_CDS: -0.84 Total: -5.07 kcal
Atomic # 7 Polarization: -40.25 SS G_CDS: -0.20 Total: -40.45 kcal
Atomic # 8 Polarization: -19.52 SS G_CDS: -0.83 Total: -20.35 kcal
Atomic # 14 Polarization: 26.23 SS G_CDS: -5.08 Total: 21.15 kcal
Total LS contribution 3.88 Total: 3.88 kcal
Total: -34.73 -6.62 -41.34 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000034999659.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -56.565 kcal
(2) G-P(sol) polarization free energy of solvation -34.726 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.292 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.616 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.343 kcal
(6) G-S(sol) free energy of system = (1) + (5) -97.908 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.18 seconds