Wall clock time and date at job start Sun Mar 29 2020 22:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00458 * 2 1 4 4 H 1.48503 * 109.46812 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.46952 * 120.00145 * 3 2 1 6 6 H 1.48498 * 109.47346 * 240.00848 * 3 2 1 7 7 C 1.37887 * 119.99601 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99414 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00019 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.47037 * 180.02562 * 9 7 2 11 11 C 1.46846 * 111.00248 * 75.54459 * 10 9 7 12 12 C 1.53033 * 109.52398 * 185.84105 * 11 10 9 13 13 C 1.53118 * 109.28005 * 300.82056 * 12 11 10 14 14 C 1.53127 * 109.16169 * 57.65211 * 13 12 11 15 15 C 1.46846 * 111.00135 * 199.75678 * 10 9 7 16 16 H 1.09000 * 109.46115 * 294.17918 * 15 10 9 17 17 C 1.50706 * 109.46313 * 54.14219 * 15 10 9 18 18 O 1.20823 * 119.99999 * 28.77616 * 17 15 10 19 19 O 1.34231 * 119.99844 * 208.77987 * 17 15 10 20 20 H 0.96995 * 120.00282 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.47178 * 300.00346 * 9 7 2 22 22 H 1.09002 * 109.47401 * 60.00396 * 9 7 2 23 23 H 1.09001 * 109.46113 * 305.85812 * 11 10 9 24 24 H 1.08996 * 109.46184 * 65.83315 * 11 10 9 25 25 H 1.08999 * 109.50675 * 60.75902 * 12 11 10 26 26 H 1.09000 * 109.50281 * 180.83830 * 12 11 10 27 27 H 1.08995 * 109.52917 * 177.56023 * 13 12 11 28 28 H 1.09007 * 109.52259 * 297.75155 * 13 12 11 29 29 H 1.08998 * 109.49510 * 62.29031 * 14 13 12 30 30 H 1.08997 * 109.50306 * 182.36441 * 14 13 12 31 31 H 0.96700 * 117.00014 * 179.97438 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 1.2843 2.7464 0.0006 5 1 3.1030 1.6962 1.2125 6 1 3.1029 1.6964 -1.2126 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 2.8076 -3.7935 1.3270 12 6 3.8982 -4.8646 1.2547 13 6 3.2827 -6.1811 0.7725 14 6 2.6202 -5.9571 -0.5897 15 6 1.5668 -4.8542 -0.4639 16 1 0.8046 -5.1599 0.2528 17 6 0.9259 -4.6165 -1.8071 18 8 1.3824 -3.7852 -2.5556 19 8 -0.1521 -5.3283 -2.1717 20 1 -0.4850 -0.8400 0.0004 21 1 0.6246 -2.5571 0.8896 22 1 0.6240 -2.5568 -0.8903 23 1 3.2453 -2.8511 1.6563 24 1 2.0398 -4.1044 2.0353 25 1 4.6734 -4.5483 0.5568 26 1 4.3347 -5.0068 2.2433 27 1 4.0637 -6.9355 0.6781 28 1 2.5346 -6.5179 1.4903 29 1 3.3753 -5.6579 -1.3166 30 1 2.1438 -6.8805 -0.9190 31 1 -0.5285 -5.1402 -3.0424 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034999659.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:57 Heat of formation + Delta-G solvation = -124.135445 kcal Electronic energy + Delta-G solvation = -14904.953851 eV Core-core repulsion = 12377.706252 eV Total energy + Delta-G solvation = -2527.247599 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.70818 -39.43297 -37.11778 -35.81790 -33.74258 -32.34250 -28.68417 -26.15903 -25.25231 -23.53075 -22.26308 -20.62690 -19.15293 -18.98089 -17.90059 -16.87122 -16.52536 -15.76835 -15.60133 -15.37064 -14.81068 -14.64768 -14.29229 -13.87726 -13.58625 -13.23894 -12.94863 -12.63866 -12.45589 -12.38169 -11.98810 -11.94113 -11.66913 -11.40908 -11.15910 -10.82853 -10.58731 -9.23145 -8.70839 -6.40251 1.13616 1.49708 1.59706 1.78997 1.93180 2.53247 3.01069 3.11996 3.74571 3.90760 3.98006 4.10286 4.19547 4.40763 4.52058 4.59339 4.71379 4.82582 4.88937 5.01031 5.04294 5.14159 5.24235 5.44344 5.52908 5.73050 5.95007 6.27341 6.33086 6.54719 6.97091 7.38665 8.66822 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.030843 B = 0.010702 C = 0.008647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.603225 B = 2615.686457 C = 3237.391032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.041 4.041 3 Si 1.122 2.878 4 H -0.281 1.281 5 H -0.263 1.263 6 H -0.275 1.275 7 C -0.590 4.590 8 H 0.052 0.948 9 C 0.191 3.809 10 N -0.526 5.526 11 C 0.064 3.936 12 C -0.112 4.112 13 C -0.109 4.109 14 C -0.099 4.099 15 C 0.088 3.912 16 H 0.069 0.931 17 C 0.478 3.522 18 O -0.530 6.530 19 O -0.511 6.511 20 H 0.249 0.751 21 H -0.040 1.040 22 H -0.003 1.003 23 H 0.061 0.939 24 H 0.027 0.973 25 H 0.062 0.938 26 H 0.093 0.907 27 H 0.100 0.900 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.100 0.900 31 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.892 -13.966 1.319 14.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.237 4.237 3 Si 0.942 3.058 4 H -0.206 1.206 5 H -0.188 1.188 6 H -0.201 1.201 7 C -0.628 4.628 8 H 0.070 0.930 9 C 0.064 3.936 10 N -0.253 5.253 11 C -0.063 4.063 12 C -0.150 4.150 13 C -0.146 4.146 14 C -0.137 4.137 15 C -0.022 4.022 16 H 0.087 0.913 17 C 0.320 3.680 18 O -0.418 6.418 19 O -0.325 6.325 20 H 0.058 0.942 21 H -0.022 1.022 22 H 0.015 0.985 23 H 0.080 0.920 24 H 0.045 0.955 25 H 0.081 0.919 26 H 0.112 0.888 27 H 0.118 0.882 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.118 0.882 31 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 5.363 -12.096 1.164 13.283 hybrid contribution -1.302 -1.347 -0.301 1.897 sum 4.061 -13.442 0.863 14.069 Atomic orbital electron populations 1.70938 1.07877 1.29256 1.49473 1.27490 0.96568 1.06807 0.92867 0.82884 0.74062 0.70780 0.78024 1.20646 1.18768 1.20060 1.22207 0.94750 0.92084 1.53798 0.92989 1.19627 0.90763 0.90681 0.92493 1.61772 1.33639 1.02181 1.27726 1.22095 0.96936 1.00103 0.87212 1.21647 0.96803 0.93910 1.02646 1.21574 1.00850 0.97359 0.94829 1.21610 0.96346 0.95410 1.00298 1.21437 0.97100 0.93853 0.89797 0.91350 1.23670 0.77695 0.76956 0.89651 1.90744 1.63258 1.33229 1.54543 1.84468 1.42978 1.61959 1.43049 0.94178 1.02245 0.98465 0.92001 0.95521 0.91928 0.88848 0.88164 0.90775 0.91666 0.88199 0.71433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.61 13.65 21.45 0.29 -60.32 16 2 C -0.04 -2.48 5.46 84.66 0.46 -2.02 16 3 Si 1.12 52.86 29.90 68.60 2.05 54.92 16 4 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 5 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 6 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 7 C -0.59 -35.89 8.61 25.60 0.22 -35.67 16 8 H 0.05 3.15 7.74 -2.91 -0.02 3.12 16 9 C 0.19 10.69 3.67 85.55 0.31 11.01 16 10 N -0.53 -23.75 4.17 -880.07 -3.67 -27.42 16 11 C 0.06 2.40 5.29 86.32 0.46 2.86 16 12 C -0.11 -3.00 6.09 30.64 0.19 -2.81 16 13 C -0.11 -2.33 6.00 30.68 0.18 -2.14 16 14 C -0.10 -2.62 5.36 30.65 0.16 -2.45 16 15 C 0.09 3.21 2.34 44.19 0.10 3.31 16 16 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 17 C 0.48 18.77 6.13 71.24 0.44 19.21 16 18 O -0.53 -25.85 16.19 21.97 0.36 -25.50 16 19 O -0.51 -15.13 13.42 -51.43 -0.69 -15.82 16 20 H 0.25 16.41 7.22 -92.71 -0.67 15.74 16 21 H -0.04 -2.34 7.87 -2.39 -0.02 -2.36 16 22 H 0.00 -0.16 5.54 -2.39 -0.01 -0.17 16 23 H 0.06 2.62 7.45 -2.39 -0.02 2.61 16 24 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.06 1.79 8.14 -2.39 -0.02 1.78 16 26 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 29 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.42 8.83 9.10 -74.06 -0.67 8.16 16 Total: -1.00 -77.81 257.67 1.42 -76.40 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: 0.55 Total: 6.45 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: 2.53 Total: -8.71 kcal Atomic # 7 Polarization: -84.36 SS G_CDS: -3.38 Total: -87.74 kcal Atomic # 8 Polarization: -40.98 SS G_CDS: -0.33 Total: -41.31 kcal Atomic # 14 Polarization: 52.86 SS G_CDS: 2.05 Total: 54.92 kcal Total: -77.81 1.42 -76.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034999659.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.737 kcal (2) G-P(sol) polarization free energy of solvation -77.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds