Wall clock time and date at job start Sun Mar 29 2020 21:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47290 * 2 1 4 4 N 1.46902 * 109.47495 * 120.00235 * 2 1 3 5 5 C 1.46947 * 111.00100 * 174.99871 * 4 2 1 6 6 C 1.53050 * 109.36354 * 183.19060 * 5 4 2 7 7 N 1.46964 * 109.36372 * 301.59410 * 6 5 4 8 8 C 1.46895 * 110.99832 * 183.18659 * 7 6 5 9 9 C 1.50702 * 109.46770 * 170.00196 * 8 7 6 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99942 * 179.72214 * 9 8 7 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 8 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 8 14 14 H 1.48501 * 109.47188 * 90.00793 * 13 11 9 15 15 H 1.48501 * 109.47085 * 210.00372 * 13 11 9 16 16 H 1.48498 * 109.47634 * 330.00608 * 13 11 9 17 17 C 1.46961 * 110.87434 * 59.32144 * 7 6 5 18 18 C 1.46957 * 110.99807 * 298.79990 * 4 2 1 19 19 H 1.09003 * 109.46673 * 300.00324 * 1 2 3 20 20 H 1.08993 * 109.47209 * 59.99365 * 1 2 3 21 21 H 1.08998 * 109.47235 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46977 * 240.00377 * 2 1 3 23 23 H 1.08999 * 109.47254 * 179.97438 * 3 2 1 24 24 H 1.09001 * 109.46889 * 300.00544 * 3 2 1 25 25 H 1.09000 * 109.46802 * 60.00270 * 3 2 1 26 26 H 1.08995 * 109.49351 * 63.22366 * 5 4 2 27 27 H 1.08997 * 109.49010 * 303.15477 * 5 4 2 28 28 H 1.09004 * 109.48956 * 181.63242 * 6 5 4 29 29 H 1.09004 * 109.49487 * 61.56311 * 6 5 4 30 30 H 1.09004 * 109.47258 * 50.00519 * 8 7 6 31 31 H 1.08994 * 109.47601 * 290.00111 * 8 7 6 32 32 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 33 33 H 1.09000 * 109.48905 * 60.65158 * 17 7 6 34 34 H 1.09006 * 109.48522 * 180.71003 * 17 7 6 35 35 H 1.09006 * 109.48944 * 296.77650 * 18 4 2 36 36 H 1.09004 * 109.48922 * 56.84213 * 18 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0198 -0.6925 1.1994 5 6 3.4838 -0.8165 1.1750 6 6 3.9462 -1.6112 2.3986 7 7 3.4988 -0.9284 3.6206 8 6 3.9884 -1.6210 4.8199 9 6 3.7243 -0.7693 6.0348 10 1 3.2406 0.1903 5.9268 11 6 4.0944 -1.2179 7.2850 12 7 4.6831 -2.3866 7.4165 13 14 3.7601 -0.1656 8.7916 14 1 2.4215 -0.4993 9.3414 15 1 4.7977 -0.4303 9.8205 16 1 3.7951 1.2694 8.4110 17 6 2.0346 -0.8043 3.6449 18 6 1.5722 -0.0098 2.4214 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 3.1301 1.4425 0.0005 24 1 1.6767 1.9564 -0.8900 25 1 1.6768 1.9563 0.8900 26 1 3.9333 0.1762 1.1950 27 1 3.7897 -1.3363 0.2671 28 1 5.0341 -1.6796 2.3979 29 1 3.5185 -2.6132 2.3645 30 1 5.0600 -1.7971 4.7257 31 1 3.4713 -2.5746 4.9254 32 1 4.9438 -2.7020 8.2960 33 1 1.5852 -1.7972 3.6250 34 1 1.7288 -0.2846 4.5530 35 1 2.0000 0.9922 2.4555 36 1 0.4843 0.0586 2.4220 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035216106.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:37 Heat of formation + Delta-G solvation = 4.938643 kcal Electronic energy + Delta-G solvation = -14805.125021 eV Core-core repulsion = 12517.026251 eV Total energy + Delta-G solvation = -2288.098770 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.14681 -35.93093 -32.79616 -31.18988 -30.35918 -27.39444 -27.16357 -24.74260 -23.10004 -21.62963 -20.34731 -18.64343 -16.30626 -16.01088 -14.93506 -14.58161 -14.31286 -14.26190 -13.65679 -13.64115 -13.29586 -12.70054 -12.05923 -12.00473 -11.94731 -11.55185 -11.20795 -11.08287 -10.98182 -10.76684 -10.60274 -10.48985 -10.22653 -10.17873 -9.64780 -9.14093 -8.41638 -7.99329 -7.17391 -6.00325 -4.01594 3.32973 3.39036 3.43421 4.15819 4.44410 4.91264 5.00324 5.12476 5.31738 5.35269 5.44728 5.53748 5.63461 5.72423 5.79263 5.83687 5.89012 5.96519 6.00123 6.09937 6.19545 6.29753 6.35090 6.51359 6.67713 6.74770 7.26437 7.36480 7.41297 7.45557 7.83171 8.13026 8.25624 8.59362 9.06076 9.62467 11.10625 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.051896 B = 0.006976 C = 0.006562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.409820 B = 4012.630559 C = 4266.184110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.075 3.925 3 C -0.187 4.187 4 N -0.534 5.534 5 C 0.059 3.941 6 C 0.056 3.944 7 N -0.538 5.538 8 C 0.193 3.807 9 C -0.506 4.506 10 H 0.062 0.938 11 C 0.055 3.945 12 N -0.899 5.899 13 Si 0.897 3.103 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.273 1.273 17 C 0.067 3.933 18 C 0.052 3.948 19 H 0.056 0.944 20 H 0.054 0.946 21 H 0.061 0.939 22 H 0.076 0.924 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.041 0.959 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.029 0.971 30 H 0.029 0.971 31 H -0.009 1.009 32 H 0.261 0.739 33 H 0.027 0.973 34 H 0.084 0.916 35 H 0.041 0.959 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.909 4.479 -13.269 15.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.034 4.034 3 C -0.245 4.245 4 N -0.258 5.258 5 C -0.069 4.069 6 C -0.073 4.073 7 N -0.264 5.264 8 C 0.068 3.932 9 C -0.545 4.545 10 H 0.080 0.920 11 C -0.146 4.146 12 N -0.539 5.539 13 Si 0.725 3.275 14 H -0.207 1.207 15 H -0.213 1.213 16 H -0.198 1.198 17 C -0.062 4.062 18 C -0.075 4.075 19 H 0.075 0.925 20 H 0.073 0.927 21 H 0.080 0.920 22 H 0.095 0.905 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.059 0.941 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.009 0.991 32 H 0.070 0.930 33 H 0.045 0.955 34 H 0.103 0.897 35 H 0.059 0.941 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.823 4.348 -13.121 14.999 hybrid contribution -0.055 0.449 0.894 1.002 sum -5.878 4.798 -12.227 14.390 Atomic orbital electron populations 1.21856 0.94660 1.02241 1.01396 1.21669 0.95561 0.92374 0.93759 1.22476 1.01685 0.98329 1.02048 1.62419 1.11161 1.50463 1.01794 1.22159 0.87207 0.99449 0.98089 1.22067 0.99525 0.95365 0.90329 1.62278 1.09486 1.51957 1.02649 1.19700 0.95429 0.92338 0.85739 1.21164 1.38681 1.04035 0.90634 0.91952 1.24995 0.95373 0.95184 0.99096 1.69965 1.41237 1.19050 1.23603 0.86507 0.77831 0.80707 0.82427 1.20741 1.21263 1.19817 1.21994 0.89125 0.98396 0.96635 1.22313 0.99269 0.96431 0.89519 0.92452 0.92692 0.92003 0.90535 0.92427 0.92611 0.92139 0.94087 0.91443 0.91152 0.95248 0.95265 0.99101 0.92952 0.95461 0.89734 0.94069 0.91026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.00 37.16 0.33 -1.22 16 2 C 0.08 0.92 2.96 -67.71 -0.20 0.72 16 3 C -0.19 -2.15 8.49 37.16 0.32 -1.84 16 4 N -0.53 -8.18 4.70 -226.50 -1.06 -9.25 16 5 C 0.06 0.93 5.25 -3.77 -0.02 0.91 16 6 C 0.06 1.07 5.61 -3.76 -0.02 1.05 16 7 N -0.54 -12.07 4.70 -235.90 -1.11 -13.18 16 8 C 0.19 5.17 4.72 -4.98 -0.02 5.15 16 9 C -0.51 -14.45 8.47 -34.44 -0.29 -14.74 16 10 H 0.06 1.76 7.13 -52.49 -0.37 1.38 16 11 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 12 N -0.90 -27.07 13.29 55.43 0.74 -26.34 16 13 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 17 C 0.07 1.37 5.43 -3.77 -0.02 1.35 16 18 C 0.05 0.86 4.81 -3.77 -0.02 0.85 16 19 H 0.06 0.64 6.36 -51.93 -0.33 0.31 16 20 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 21 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.08 0.88 8.11 -51.93 -0.42 0.46 16 23 H 0.06 0.70 6.59 -51.93 -0.34 0.36 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.75 6.46 -51.93 -0.34 0.41 16 26 H 0.04 0.66 6.60 -51.93 -0.34 0.32 16 27 H 0.07 0.93 8.12 -51.93 -0.42 0.50 16 28 H 0.07 1.30 8.07 -51.93 -0.42 0.89 16 29 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.03 0.83 8.03 -51.93 -0.42 0.41 16 31 H -0.01 -0.25 8.12 -51.93 -0.42 -0.68 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.08 1.82 6.79 -51.93 -0.35 1.47 16 35 H 0.04 0.70 6.47 -51.93 -0.34 0.36 16 36 H 0.07 1.05 6.17 -51.93 -0.32 0.73 16 LS Contribution 275.78 15.07 4.16 4.16 Total: -1.00 -29.88 275.78 -8.43 -38.31 By element: Atomic # 1 Polarization: 1.88 SS G_CDS: -6.08 Total: -4.21 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -0.04 Total: -6.31 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: -1.44 Total: -48.76 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.88 -8.43 -38.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035216106.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.245 kcal (2) G-P(sol) polarization free energy of solvation -29.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds