Wall clock time and date at job start Sun Mar 29 2020 21:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47290 * 2 1 4 4 N 1.46902 * 109.47495 * 120.00235 * 2 1 3 5 5 C 1.46947 * 111.00100 * 174.99871 * 4 2 1 6 6 C 1.53050 * 109.36354 * 183.19060 * 5 4 2 7 7 N 1.46964 * 109.36372 * 301.59410 * 6 5 4 8 8 C 1.46895 * 110.99832 * 183.18659 * 7 6 5 9 9 C 1.50702 * 109.46770 * 170.00196 * 8 7 6 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99942 * 179.72214 * 9 8 7 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 8 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 8 14 14 H 1.48501 * 109.47188 * 90.00793 * 13 11 9 15 15 H 1.48501 * 109.47085 * 210.00372 * 13 11 9 16 16 H 1.48498 * 109.47634 * 330.00608 * 13 11 9 17 17 C 1.46961 * 110.87434 * 59.32144 * 7 6 5 18 18 C 1.46957 * 110.99807 * 298.79990 * 4 2 1 19 19 H 1.09003 * 109.46673 * 300.00324 * 1 2 3 20 20 H 1.08993 * 109.47209 * 59.99365 * 1 2 3 21 21 H 1.08998 * 109.47235 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46977 * 240.00377 * 2 1 3 23 23 H 1.08999 * 109.47254 * 179.97438 * 3 2 1 24 24 H 1.09001 * 109.46889 * 300.00544 * 3 2 1 25 25 H 1.09000 * 109.46802 * 60.00270 * 3 2 1 26 26 H 1.08995 * 109.49351 * 63.22366 * 5 4 2 27 27 H 1.08997 * 109.49010 * 303.15477 * 5 4 2 28 28 H 1.09004 * 109.48956 * 181.63242 * 6 5 4 29 29 H 1.09004 * 109.49487 * 61.56311 * 6 5 4 30 30 H 1.09004 * 109.47258 * 50.00519 * 8 7 6 31 31 H 1.08994 * 109.47601 * 290.00111 * 8 7 6 32 32 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 33 33 H 1.09000 * 109.48905 * 60.65158 * 17 7 6 34 34 H 1.09006 * 109.48522 * 180.71003 * 17 7 6 35 35 H 1.09006 * 109.48944 * 296.77650 * 18 4 2 36 36 H 1.09004 * 109.48922 * 56.84213 * 18 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0198 -0.6925 1.1994 5 6 3.4838 -0.8165 1.1750 6 6 3.9462 -1.6112 2.3986 7 7 3.4988 -0.9284 3.6206 8 6 3.9884 -1.6210 4.8199 9 6 3.7243 -0.7693 6.0348 10 1 3.2406 0.1903 5.9268 11 6 4.0944 -1.2179 7.2850 12 7 4.6831 -2.3866 7.4165 13 14 3.7601 -0.1656 8.7916 14 1 2.4215 -0.4993 9.3414 15 1 4.7977 -0.4303 9.8205 16 1 3.7951 1.2694 8.4110 17 6 2.0346 -0.8043 3.6449 18 6 1.5722 -0.0098 2.4214 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 3.1301 1.4425 0.0005 24 1 1.6767 1.9564 -0.8900 25 1 1.6768 1.9563 0.8900 26 1 3.9333 0.1762 1.1950 27 1 3.7897 -1.3363 0.2671 28 1 5.0341 -1.6796 2.3979 29 1 3.5185 -2.6132 2.3645 30 1 5.0600 -1.7971 4.7257 31 1 3.4713 -2.5746 4.9254 32 1 4.9438 -2.7020 8.2960 33 1 1.5852 -1.7972 3.6250 34 1 1.7288 -0.2846 4.5530 35 1 2.0000 0.9922 2.4555 36 1 0.4843 0.0586 2.4220 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035216106.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:36 Heat of formation + Delta-G solvation = -16.381091 kcal Electronic energy + Delta-G solvation = -14806.049514 eV Core-core repulsion = 12517.026251 eV Total energy + Delta-G solvation = -2289.023263 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.49544 -37.47020 -34.82705 -32.63082 -31.81437 -29.25366 -28.06963 -26.47072 -24.59447 -23.47733 -21.67911 -19.99621 -18.50179 -17.35557 -16.57897 -16.05888 -15.86667 -15.58550 -15.33893 -14.97797 -14.67704 -14.16452 -13.63898 -13.50203 -13.33244 -12.83022 -12.71782 -12.58704 -12.42770 -12.37553 -12.09898 -12.08550 -11.84936 -11.57096 -11.29728 -11.14860 -10.63105 -9.23607 -9.01759 -8.21802 -6.32570 1.40289 1.42077 1.53794 2.39523 2.98037 3.10334 3.29894 3.94906 3.99370 4.20641 4.26192 4.38739 4.40437 4.45221 4.51155 4.64500 4.80084 4.81834 4.87170 4.96366 5.00481 5.02564 5.06596 5.14682 5.20925 5.26471 5.38184 5.44707 5.62661 6.01664 6.13047 6.20180 6.37126 6.61797 6.83309 7.37302 8.89667 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.051896 B = 0.006976 C = 0.006562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.409820 B = 4012.630559 C = 4266.184110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.074 3.926 3 C -0.182 4.182 4 N -0.544 5.544 5 C 0.069 3.931 6 C 0.053 3.947 7 N -0.544 5.544 8 C 0.208 3.792 9 C -0.525 4.525 10 H 0.063 0.937 11 C 0.001 3.999 12 N -0.935 5.935 13 Si 0.972 3.028 14 H -0.272 1.272 15 H -0.281 1.281 16 H -0.264 1.264 17 C 0.068 3.932 18 C 0.066 3.934 19 H 0.052 0.948 20 H 0.077 0.923 21 H 0.056 0.944 22 H 0.090 0.910 23 H 0.049 0.951 24 H 0.077 0.923 25 H 0.049 0.951 26 H 0.041 0.959 27 H 0.095 0.905 28 H 0.070 0.930 29 H 0.019 0.981 30 H 0.004 0.996 31 H -0.042 1.042 32 H 0.265 0.735 33 H 0.013 0.987 34 H 0.067 0.933 35 H 0.039 0.961 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.893 5.978 -14.360 17.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.034 4.034 3 C -0.241 4.241 4 N -0.269 5.269 5 C -0.059 4.059 6 C -0.076 4.076 7 N -0.269 5.269 8 C 0.082 3.918 9 C -0.563 4.563 10 H 0.081 0.919 11 C -0.197 4.197 12 N -0.576 5.576 13 Si 0.796 3.204 14 H -0.197 1.197 15 H -0.206 1.206 16 H -0.189 1.189 17 C -0.060 4.060 18 C -0.062 4.062 19 H 0.071 0.929 20 H 0.096 0.904 21 H 0.075 0.925 22 H 0.108 0.892 23 H 0.068 0.932 24 H 0.096 0.904 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.113 0.887 28 H 0.088 0.912 29 H 0.037 0.963 30 H 0.022 0.978 31 H -0.024 1.024 32 H 0.074 0.926 33 H 0.031 0.969 34 H 0.085 0.915 35 H 0.058 0.942 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.819 5.856 -14.245 16.844 hybrid contribution 0.255 -0.065 1.165 1.194 sum -6.564 5.791 -13.081 15.740 Atomic orbital electron populations 1.21841 0.93424 1.02228 1.02333 1.21808 0.96520 0.92633 0.92431 1.22425 1.01159 0.97820 1.02649 1.62411 1.10720 1.51262 1.02502 1.22068 0.87725 0.99032 0.97083 1.22182 0.99614 0.95333 0.90425 1.62225 1.10899 1.51509 1.02291 1.19358 0.93520 0.91168 0.87789 1.21447 1.38952 1.04233 0.91639 0.91905 1.25958 0.94790 0.96468 1.02522 1.70097 1.42012 1.20821 1.24653 0.85340 0.78025 0.79003 0.77997 1.19695 1.20618 1.18855 1.21994 0.87684 0.98077 0.98275 1.22134 1.00363 0.95311 0.88345 0.92903 0.90393 0.92493 0.89197 0.93168 0.90392 0.93147 0.94110 0.88679 0.91181 0.96293 0.97834 1.02408 0.92624 0.96916 0.91487 0.94247 0.88927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.00 71.98 0.65 -1.94 16 2 C 0.07 1.58 2.96 44.92 0.13 1.71 16 3 C -0.18 -3.64 8.49 71.98 0.61 -3.03 16 4 N -0.54 -15.62 4.70 -870.50 -4.09 -19.71 16 5 C 0.07 2.06 5.25 86.31 0.45 2.52 16 6 C 0.05 2.04 5.61 86.31 0.48 2.53 16 7 N -0.54 -25.01 4.70 -900.26 -4.23 -29.24 16 8 C 0.21 11.65 4.72 85.56 0.40 12.06 16 9 C -0.52 -30.64 8.47 25.60 0.22 -30.42 16 10 H 0.06 3.59 7.13 -2.91 -0.02 3.57 16 11 C 0.00 0.03 5.46 84.66 0.46 0.49 16 12 N -0.94 -57.56 13.29 21.45 0.28 -57.27 16 13 Si 0.97 44.93 29.54 68.60 2.03 46.96 16 14 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 15 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 16 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 17 C 0.07 2.82 5.43 86.31 0.47 3.29 16 18 C 0.07 2.11 4.81 86.31 0.42 2.52 16 19 H 0.05 1.02 6.36 -2.39 -0.02 1.00 16 20 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 21 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 22 H 0.09 1.73 8.11 -2.39 -0.02 1.71 16 23 H 0.05 1.08 6.59 -2.39 -0.02 1.06 16 24 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.05 1.11 6.46 -2.39 -0.02 1.10 16 26 H 0.04 1.24 6.60 -2.39 -0.02 1.22 16 27 H 0.09 2.35 8.12 -2.39 -0.02 2.33 16 28 H 0.07 2.65 8.07 -2.39 -0.02 2.63 16 29 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.00 0.21 8.03 -2.38 -0.02 0.19 16 31 H -0.04 -2.56 8.12 -2.39 -0.02 -2.58 16 32 H 0.26 15.25 8.31 -92.70 -0.77 14.48 16 33 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.07 2.96 6.79 -2.38 -0.02 2.94 16 35 H 0.04 1.28 6.47 -2.38 -0.02 1.26 16 36 H 0.09 2.55 6.17 -2.39 -0.01 2.54 16 Total: -1.00 -65.10 275.78 -0.69 -65.78 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: 1.03 Total: 3.77 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: 4.30 Total: -10.28 kcal Atomic # 7 Polarization: -98.19 SS G_CDS: -8.04 Total: -106.23 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -65.10 -0.69 -65.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035216106.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.403 kcal (2) G-P(sol) polarization free energy of solvation -65.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds