Wall clock time and date at job start Sun Mar 29 2020 22:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00063 * 2 1 4 4 H 1.48504 * 109.46557 * 90.00551 * 3 2 1 5 5 H 1.48497 * 109.47201 * 210.00627 * 3 2 1 6 6 H 1.48499 * 109.47000 * 330.00576 * 3 2 1 7 7 C 1.37875 * 120.00265 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99450 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00277 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47287 * 180.02562 * 9 7 2 11 11 N 1.46900 * 109.47529 * 179.97438 * 10 9 7 12 12 C 1.47847 * 110.99583 * 285.01899 * 11 10 9 13 13 C 1.54908 * 104.79387 * 213.63114 * 12 11 10 14 14 C 1.55144 * 101.65352 * 37.06969 * 13 12 11 15 15 C 1.47437 * 111.00231 * 164.17213 * 11 10 9 16 16 H 1.08999 * 109.89427 * 242.66083 * 15 11 10 17 17 C 1.50702 * 109.89078 * 3.69397 * 15 11 10 18 18 O 1.20819 * 119.99902 * 50.29319 * 17 15 11 19 19 O 1.34231 * 119.99614 * 230.30098 * 17 15 11 20 20 H 0.96996 * 120.00102 * 359.97438 * 1 2 3 21 21 H 1.09007 * 109.47259 * 299.99713 * 9 7 2 22 22 H 1.08996 * 109.47693 * 60.00026 * 9 7 2 23 23 H 1.09002 * 109.46889 * 299.99555 * 10 9 7 24 24 H 1.09001 * 109.47483 * 59.99715 * 10 9 7 25 25 H 1.08995 * 110.37572 * 332.46212 * 12 11 10 26 26 H 1.09002 * 110.37482 * 94.80686 * 12 11 10 27 27 H 1.09005 * 110.99470 * 278.98141 * 13 12 11 28 28 H 1.09001 * 110.98919 * 155.15851 * 13 12 11 29 29 H 1.08999 * 110.70988 * 205.96068 * 14 13 12 30 30 H 1.09003 * 110.85190 * 82.79239 * 14 13 12 31 31 H 0.96704 * 116.99695 * 179.97438 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0463 1.4002 5 1 3.5467 1.4402 -0.7002 6 1 1.4466 2.6527 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0023 11 7 5.4906 -2.6366 -0.0035 12 6 6.0192 -2.2782 -1.3369 13 6 7.3251 -3.0994 -1.4784 14 6 6.9368 -4.4285 -0.7786 15 6 6.0192 -3.9610 0.3708 16 1 6.5924 -3.8840 1.2948 17 6 4.8829 -4.9341 0.5522 18 8 4.0379 -5.0426 -0.3045 19 8 4.8095 -5.6802 1.6656 20 1 -0.4850 0.8400 0.0004 21 1 3.8746 -0.6800 -0.8912 22 1 3.8753 -0.6804 0.8888 23 1 3.6586 -3.1509 0.8876 24 1 3.6579 -3.1498 -0.8924 25 1 5.3087 -2.5581 -2.1146 26 1 6.2352 -1.2109 -1.3852 27 1 8.1510 -2.6121 -0.9602 28 1 7.5689 -3.2673 -2.5275 29 1 7.8213 -4.9301 -0.3860 30 1 6.3956 -5.0831 -1.4618 31 1 4.0623 -6.2899 1.7371 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035300853.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:06 Heat of formation + Delta-G solvation = -85.225604 kcal Electronic energy + Delta-G solvation = -14670.592122 eV Core-core repulsion = 12145.031781 eV Total energy + Delta-G solvation = -2525.560342 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.78754 -38.10275 -35.85560 -33.73223 -31.94403 -29.78442 -28.91938 -24.58073 -23.41930 -21.54008 -20.45493 -19.76194 -18.03633 -16.92544 -16.37268 -15.70049 -15.26501 -14.80313 -14.09271 -14.01690 -13.11419 -12.83614 -12.68039 -12.32974 -12.17387 -11.70521 -11.53351 -11.12564 -11.03045 -10.94082 -10.77749 -10.41068 -9.96243 -9.72821 -9.71346 -9.16598 -8.49731 -8.01878 -6.00240 -3.98312 2.29717 3.13395 3.35218 3.41573 3.46922 4.23336 4.49505 4.51004 4.71819 5.01318 5.33889 5.35576 5.38667 5.49560 5.68828 5.80574 5.86246 5.97192 6.18691 6.20241 6.41061 6.58015 6.85610 7.04171 7.12131 7.45515 7.56483 7.85653 8.03833 8.58223 9.04637 9.61822 11.13249 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.036121 B = 0.009056 C = 0.007731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.993541 B = 3091.060532 C = 3620.887763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.067 3.933 3 Si 0.882 3.118 4 H -0.277 1.277 5 H -0.265 1.265 6 H -0.289 1.289 7 C -0.520 4.520 8 H 0.070 0.930 9 C -0.004 4.004 10 C 0.054 3.946 11 N -0.507 5.507 12 C 0.039 3.961 13 C -0.126 4.126 14 C -0.129 4.129 15 C 0.080 3.920 16 H 0.112 0.888 17 C 0.464 3.536 18 O -0.503 6.503 19 O -0.519 6.519 20 H 0.263 0.737 21 H 0.016 0.984 22 H 0.019 0.981 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.055 0.945 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.292 -8.488 -0.296 17.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.134 4.134 3 Si 0.710 3.290 4 H -0.203 1.203 5 H -0.189 1.189 6 H -0.215 1.215 7 C -0.558 4.558 8 H 0.088 0.912 9 C -0.042 4.042 10 C -0.072 4.072 11 N -0.233 5.233 12 C -0.088 4.088 13 C -0.164 4.164 14 C -0.167 4.167 15 C -0.030 4.030 16 H 0.130 0.870 17 C 0.305 3.695 18 O -0.389 6.389 19 O -0.331 6.331 20 H 0.072 0.928 21 H 0.034 0.966 22 H 0.037 0.963 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.105 0.895 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 15.367 -7.770 -0.198 17.220 hybrid contribution -0.638 -0.114 -0.401 0.762 sum 14.729 -7.883 -0.600 16.717 Atomic orbital electron populations 1.69921 1.06309 1.26847 1.51276 1.25000 0.94731 0.99157 0.94537 0.86733 0.80323 0.83414 0.78557 1.20251 1.18924 1.21486 1.21077 0.89385 0.94533 1.50815 0.91182 1.19538 0.96499 0.91424 0.96766 1.22779 0.82800 1.00735 1.00875 1.64323 1.11561 1.20037 1.27348 1.23179 0.94952 1.00787 0.89922 1.22718 0.98272 0.94659 1.00726 1.22784 0.98920 0.98745 0.96281 1.22443 0.92057 0.86954 1.01505 0.87030 1.24146 0.87126 0.79513 0.78749 1.90773 1.40485 1.64418 1.43250 1.84556 1.52581 1.52688 1.43250 0.92766 0.96562 0.96307 0.92405 0.92246 0.92687 0.89542 0.90303 0.90458 0.89904 0.90669 0.73540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.72 13.96 55.43 0.77 -27.95 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 22.42 27.47 -169.99 -4.67 17.75 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 6 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 7 C -0.52 -15.56 9.66 -34.44 -0.33 -15.90 16 8 H 0.07 2.28 7.99 -52.49 -0.42 1.86 16 9 C 0.00 -0.11 4.16 -27.89 -0.12 -0.23 16 10 C 0.05 1.20 3.34 -3.82 -0.01 1.19 16 11 N -0.51 -9.01 5.12 -224.72 -1.15 -10.16 16 12 C 0.04 0.61 6.07 -2.30 -0.01 0.59 16 13 C -0.13 -1.41 7.08 -24.59 -0.17 -1.58 16 14 C -0.13 -1.47 6.46 -24.90 -0.16 -1.64 16 15 C 0.08 1.16 3.87 -67.88 -0.26 0.90 16 16 H 0.11 1.43 8.14 -51.93 -0.42 1.01 16 17 C 0.46 7.38 5.38 36.01 0.19 7.57 16 18 O -0.50 -9.72 14.54 -18.74 -0.27 -9.99 16 19 O -0.52 -6.69 13.42 -39.26 -0.53 -7.22 16 20 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 21 H 0.02 0.41 6.76 -51.93 -0.35 0.06 16 22 H 0.02 0.48 7.57 -51.93 -0.39 0.08 16 23 H 0.06 1.32 6.48 -51.93 -0.34 0.99 16 24 H 0.06 1.41 6.08 -51.93 -0.32 1.09 16 25 H 0.05 0.92 7.52 -51.93 -0.39 0.53 16 26 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 27 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.92 7.76 -51.93 -0.40 0.52 16 31 H 0.41 3.64 9.10 45.56 0.41 4.05 16 LS Contribution 255.05 15.07 3.84 3.84 Total: -1.00 -34.37 255.05 -6.45 -40.82 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -3.47 Total: 0.08 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -0.98 Total: -7.18 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: -0.38 Total: -38.11 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.80 Total: -17.21 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.67 Total: 17.75 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -34.37 -6.45 -40.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035300853.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.402 kcal (2) G-P(sol) polarization free energy of solvation -34.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds