Wall clock time and date at job start Sun Mar 29 2020 22:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00063 * 2 1 4 4 H 1.48504 * 109.46557 * 90.00551 * 3 2 1 5 5 H 1.48497 * 109.47201 * 210.00627 * 3 2 1 6 6 H 1.48499 * 109.47000 * 330.00576 * 3 2 1 7 7 C 1.37875 * 120.00265 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99450 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00277 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47287 * 180.02562 * 9 7 2 11 11 N 1.46900 * 109.47529 * 179.97438 * 10 9 7 12 12 C 1.47847 * 110.99583 * 285.01899 * 11 10 9 13 13 C 1.54908 * 104.79387 * 213.63114 * 12 11 10 14 14 C 1.55144 * 101.65352 * 37.06969 * 13 12 11 15 15 C 1.47437 * 111.00231 * 164.17213 * 11 10 9 16 16 H 1.08999 * 109.89427 * 242.66083 * 15 11 10 17 17 C 1.50702 * 109.89078 * 3.69397 * 15 11 10 18 18 O 1.20819 * 119.99902 * 50.29319 * 17 15 11 19 19 O 1.34231 * 119.99614 * 230.30098 * 17 15 11 20 20 H 0.96996 * 120.00102 * 359.97438 * 1 2 3 21 21 H 1.09007 * 109.47259 * 299.99713 * 9 7 2 22 22 H 1.08996 * 109.47693 * 60.00026 * 9 7 2 23 23 H 1.09002 * 109.46889 * 299.99555 * 10 9 7 24 24 H 1.09001 * 109.47483 * 59.99715 * 10 9 7 25 25 H 1.08995 * 110.37572 * 332.46212 * 12 11 10 26 26 H 1.09002 * 110.37482 * 94.80686 * 12 11 10 27 27 H 1.09005 * 110.99470 * 278.98141 * 13 12 11 28 28 H 1.09001 * 110.98919 * 155.15851 * 13 12 11 29 29 H 1.08999 * 110.70988 * 205.96068 * 14 13 12 30 30 H 1.09003 * 110.85190 * 82.79239 * 14 13 12 31 31 H 0.96704 * 116.99695 * 179.97438 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0463 1.4002 5 1 3.5467 1.4402 -0.7002 6 1 1.4466 2.6527 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0023 11 7 5.4906 -2.6366 -0.0035 12 6 6.0192 -2.2782 -1.3369 13 6 7.3251 -3.0994 -1.4784 14 6 6.9368 -4.4285 -0.7786 15 6 6.0192 -3.9610 0.3708 16 1 6.5924 -3.8840 1.2948 17 6 4.8829 -4.9341 0.5522 18 8 4.0379 -5.0426 -0.3045 19 8 4.8095 -5.6802 1.6656 20 1 -0.4850 0.8400 0.0004 21 1 3.8746 -0.6800 -0.8912 22 1 3.8753 -0.6804 0.8888 23 1 3.6586 -3.1509 0.8876 24 1 3.6579 -3.1498 -0.8924 25 1 5.3087 -2.5581 -2.1146 26 1 6.2352 -1.2109 -1.3852 27 1 8.1510 -2.6121 -0.9602 28 1 7.5689 -3.2673 -2.5275 29 1 7.8213 -4.9301 -0.3860 30 1 6.3956 -5.0831 -1.4618 31 1 4.0623 -6.2899 1.7371 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035300853.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:05 Heat of formation + Delta-G solvation = -112.276074 kcal Electronic energy + Delta-G solvation = -14671.765119 eV Core-core repulsion = 12145.031781 eV Total energy + Delta-G solvation = -2526.733338 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.05166 -39.31888 -37.08780 -35.68085 -33.82732 -31.06544 -30.51901 -26.40113 -24.70481 -23.01349 -21.87907 -21.09415 -19.28301 -19.04741 -17.69660 -17.07299 -16.53987 -16.16080 -15.98329 -15.59029 -14.78837 -14.28337 -14.15761 -13.90557 -13.53089 -13.13960 -12.94472 -12.63485 -12.49904 -12.09165 -12.02367 -11.84596 -11.74668 -11.64240 -11.44096 -11.38429 -10.80343 -9.45826 -8.33630 -6.39602 1.05267 1.34667 1.37221 1.50381 2.03880 2.34401 2.89509 3.01184 3.48965 3.68047 4.08328 4.20869 4.27719 4.34841 4.48589 4.53615 4.81804 4.85604 4.87630 4.99503 5.07252 5.15564 5.27551 5.37275 5.55264 5.56729 5.87635 5.90291 6.23201 6.67138 6.90599 7.25080 8.83626 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.036121 B = 0.009056 C = 0.007731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.993541 B = 3091.060532 C = 3620.887763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.005 3.995 3 Si 0.960 3.040 4 H -0.263 1.263 5 H -0.245 1.245 6 H -0.280 1.280 7 C -0.539 4.539 8 H 0.021 0.979 9 C 0.004 3.996 10 C 0.076 3.924 11 N -0.513 5.513 12 C 0.028 3.972 13 C -0.111 4.111 14 C -0.122 4.122 15 C 0.073 3.927 16 H 0.138 0.862 17 C 0.464 3.536 18 O -0.548 6.548 19 O -0.510 6.510 20 H 0.268 0.732 21 H 0.022 0.978 22 H 0.024 0.976 23 H 0.041 0.959 24 H 0.033 0.967 25 H 0.032 0.968 26 H 0.089 0.911 27 H 0.102 0.898 28 H 0.098 0.902 29 H 0.121 0.879 30 H 0.062 0.938 31 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.555 -7.755 -0.028 20.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.192 4.192 3 Si 0.782 3.218 4 H -0.188 1.188 5 H -0.168 1.168 6 H -0.206 1.206 7 C -0.577 4.577 8 H 0.039 0.961 9 C -0.034 4.034 10 C -0.052 4.052 11 N -0.238 5.238 12 C -0.100 4.100 13 C -0.148 4.148 14 C -0.160 4.160 15 C -0.036 4.036 16 H 0.155 0.845 17 C 0.307 3.693 18 O -0.437 6.437 19 O -0.322 6.322 20 H 0.077 0.923 21 H 0.040 0.960 22 H 0.042 0.958 23 H 0.059 0.941 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.107 0.893 27 H 0.120 0.880 28 H 0.116 0.884 29 H 0.140 0.860 30 H 0.081 0.919 31 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 18.651 -7.073 0.090 19.947 hybrid contribution -1.724 -0.474 -0.440 1.842 sum 16.927 -7.547 -0.350 18.536 Atomic orbital electron populations 1.70078 1.08425 1.28408 1.52228 1.26073 0.95720 1.03787 0.93634 0.85524 0.79397 0.77424 0.79473 1.18833 1.16840 1.20575 1.21364 0.92009 0.92994 1.51342 0.96094 1.19399 0.93313 0.93807 0.96910 1.22285 0.86083 0.97882 0.98924 1.64219 1.08128 1.22595 1.28905 1.23324 0.96743 1.01836 0.88060 1.22721 0.96271 0.93406 1.02439 1.22836 0.99333 0.98960 0.94864 1.22741 0.91888 0.85135 1.03884 0.84487 1.24514 0.86810 0.79455 0.78550 1.90770 1.42187 1.65922 1.44866 1.84508 1.53392 1.52606 1.41692 0.92280 0.95991 0.95798 0.94073 0.94855 0.94924 0.89283 0.87975 0.88370 0.86043 0.91934 0.71600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.05 13.96 21.45 0.30 -61.76 16 2 C 0.00 0.29 5.47 84.65 0.46 0.75 16 3 Si 0.96 45.93 27.47 68.60 1.88 47.82 16 4 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.25 -10.88 6.54 99.48 0.65 -10.23 16 6 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 7 C -0.54 -33.51 9.66 25.60 0.25 -33.26 16 8 H 0.02 1.45 7.99 -2.91 -0.02 1.42 16 9 C 0.00 0.18 4.16 29.85 0.12 0.31 16 10 C 0.08 3.42 3.34 86.30 0.29 3.71 16 11 N -0.51 -17.59 5.12 -864.88 -4.43 -22.02 16 12 C 0.03 0.81 6.07 86.77 0.53 1.34 16 13 C -0.11 -2.05 7.08 31.98 0.23 -1.83 16 14 C -0.12 -2.37 6.46 31.78 0.21 -2.17 16 15 C 0.07 1.95 3.87 44.52 0.17 2.12 16 16 H 0.14 3.01 8.14 -2.39 -0.02 2.99 16 17 C 0.46 14.52 5.38 71.24 0.38 14.90 16 18 O -0.55 -21.85 14.54 21.99 0.32 -21.53 16 19 O -0.51 -12.48 13.42 -51.42 -0.69 -13.17 16 20 H 0.27 16.16 8.31 -92.71 -0.77 15.39 16 21 H 0.02 1.09 6.76 -2.38 -0.02 1.07 16 22 H 0.02 1.19 7.57 -2.39 -0.02 1.17 16 23 H 0.04 1.95 6.48 -2.39 -0.02 1.93 16 24 H 0.03 1.67 6.08 -2.39 -0.01 1.66 16 25 H 0.03 1.09 7.52 -2.39 -0.02 1.07 16 26 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 27 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 28 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.06 1.40 7.76 -2.39 -0.02 1.38 16 31 H 0.42 7.23 9.10 -74.05 -0.67 6.56 16 Total: -1.00 -77.48 255.05 0.42 -77.06 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: 0.40 Total: 7.73 kcal Atomic # 6 Polarization: -16.77 SS G_CDS: 2.64 Total: -14.13 kcal Atomic # 7 Polarization: -79.65 SS G_CDS: -4.13 Total: -83.78 kcal Atomic # 8 Polarization: -34.32 SS G_CDS: -0.37 Total: -34.69 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 1.88 Total: 47.82 kcal Total: -77.48 0.42 -77.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035300853.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.218 kcal (2) G-P(sol) polarization free energy of solvation -77.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds