Wall clock time and date at job start Sun Mar 29 2020 22:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00184 * 2 1 4 4 H 1.48501 * 109.47166 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46904 * 300.00030 * 3 2 1 6 6 H 1.48497 * 109.47033 * 59.99933 * 3 2 1 7 7 C 1.37872 * 119.99814 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00327 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00324 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47176 * 180.02562 * 9 7 2 11 11 N 1.46904 * 109.46800 * 179.97438 * 10 9 7 12 12 C 1.47439 * 111.00045 * 290.12836 * 11 10 9 13 13 C 1.54322 * 107.36952 * 236.65966 * 12 11 10 14 14 C 1.55398 * 102.90031 * 337.89642 * 13 12 11 15 15 C 1.47843 * 110.99640 * 169.28128 * 11 10 9 16 16 H 1.09001 * 110.37314 * 27.42672 * 15 11 10 17 17 C 1.50698 * 110.37839 * 265.19319 * 15 11 10 18 18 O 1.20828 * 119.99789 * 0.02562 * 17 15 11 19 19 O 1.34218 * 120.00470 * 180.02562 * 17 15 11 20 20 H 0.97001 * 119.99824 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.46517 * 60.00094 * 9 7 2 22 22 H 1.08999 * 109.46672 * 300.00702 * 9 7 2 23 23 H 1.09004 * 109.47094 * 60.00370 * 10 9 7 24 24 H 1.08996 * 109.46905 * 300.00140 * 10 9 7 25 25 H 1.09002 * 109.88998 * 356.14887 * 12 11 10 26 26 H 1.09003 * 109.88733 * 117.17548 * 12 11 10 27 27 H 1.09005 * 110.70342 * 96.18020 * 13 12 11 28 28 H 1.08997 * 110.70605 * 219.41644 * 13 12 11 29 29 H 1.08995 * 110.87020 * 277.39488 * 14 13 12 30 30 H 1.08997 * 111.05714 * 153.64720 * 14 13 12 31 31 H 0.96704 * 117.00686 * 179.97438 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5107 -4.9343 0.0001 12 6 0.8367 -5.1546 1.2928 13 6 1.3352 -6.5055 1.8479 14 6 1.8351 -7.2411 0.5735 15 6 2.4202 -6.0712 -0.2566 16 1 3.4295 -5.8331 0.0791 17 6 2.4244 -6.4192 -1.7229 18 8 1.7409 -5.7896 -2.4951 19 8 3.1875 -7.4283 -2.1710 20 1 -0.4850 0.8401 0.0004 21 1 0.6241 -2.5566 -0.8903 22 1 0.6246 -2.5570 0.8896 23 1 2.8719 -3.6044 0.8895 24 1 2.8719 -3.6043 -0.8905 25 1 1.0915 -4.3524 1.9853 26 1 -0.2429 -5.1894 1.1468 27 1 2.1541 -6.3545 2.5513 28 1 0.5187 -7.0542 2.3173 29 1 1.0060 -7.7157 0.0488 30 1 2.6073 -7.9698 0.8195 31 1 3.1568 -7.6143 -3.1195 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035300858.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:08 Heat of formation + Delta-G solvation = -93.314687 kcal Electronic energy + Delta-G solvation = -14384.399022 eV Core-core repulsion = 11858.487911 eV Total energy + Delta-G solvation = -2525.911111 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.21830 -38.22646 -35.77058 -33.66407 -31.83185 -29.64744 -28.41812 -24.53293 -23.36688 -21.61240 -20.44000 -19.46468 -17.83684 -16.69014 -16.44121 -15.56699 -15.15687 -14.49886 -14.33896 -13.38715 -13.37058 -13.04009 -12.56611 -12.07753 -11.76811 -11.59903 -11.22988 -11.07722 -11.02857 -10.90852 -10.62615 -10.50539 -10.09717 -9.85888 -9.40258 -9.08363 -8.31654 -7.84165 -5.96259 -3.98822 2.50836 3.07897 3.33159 3.40353 3.44280 4.36647 4.52035 4.65313 4.84871 5.03674 5.28117 5.39661 5.49070 5.63033 5.76435 5.87464 5.91458 6.16543 6.18598 6.37287 6.44423 6.68768 6.95709 7.36815 7.41710 7.76835 7.93063 8.12578 8.20572 8.45597 9.08567 9.64502 11.15188 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.040233 B = 0.007321 C = 0.006668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.782112 B = 3823.937865 C = 4197.878796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.030 3.970 10 C 0.061 3.939 11 N -0.513 5.513 12 C 0.047 3.953 13 C -0.141 4.141 14 C -0.113 4.113 15 C 0.079 3.921 16 H 0.088 0.912 17 C 0.478 3.522 18 O -0.483 6.483 19 O -0.526 6.526 20 H 0.260 0.740 21 H 0.027 0.973 22 H 0.017 0.983 23 H 0.025 0.975 24 H 0.058 0.942 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.993 -15.052 1.776 15.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.007 4.007 10 C -0.066 4.066 11 N -0.238 5.238 12 C -0.080 4.080 13 C -0.180 4.180 14 C -0.151 4.151 15 C -0.031 4.031 16 H 0.105 0.895 17 C 0.317 3.683 18 O -0.367 6.367 19 O -0.339 6.339 20 H 0.069 0.931 21 H 0.045 0.955 22 H 0.036 0.964 23 H 0.043 0.957 24 H 0.077 0.923 25 H 0.086 0.914 26 H 0.096 0.904 27 H 0.088 0.912 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.101 0.899 31 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 4.282 -14.608 1.577 15.304 hybrid contribution 1.031 0.895 -0.129 1.371 sum 5.313 -13.713 1.448 14.777 Atomic orbital electron populations 1.69992 1.06006 1.26422 1.50686 1.24993 0.94834 0.99161 0.95340 0.86541 0.80048 0.83850 0.77571 1.19808 1.20977 1.21028 1.21219 0.92968 0.91054 1.50821 0.92790 1.19061 0.93870 0.89732 0.98045 1.22561 0.96847 0.88317 0.98839 1.63123 1.28089 1.01122 1.31461 1.22821 0.99946 0.95931 0.89298 1.22890 1.01240 0.96876 0.96978 1.22667 1.00907 0.95901 0.95616 1.22007 0.98705 0.94260 0.88125 0.89473 1.23406 0.76121 0.76700 0.92032 1.90751 1.38952 1.49512 1.57464 1.84514 1.65026 1.51787 1.32522 0.93062 0.95452 0.96445 0.95676 0.92312 0.91405 0.90371 0.91190 0.90405 0.90411 0.89950 0.73718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.44 13.29 55.43 0.74 -26.70 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.52 -15.16 9.11 -34.44 -0.31 -15.48 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.03 0.82 5.00 -27.88 -0.14 0.68 16 10 C 0.06 1.34 4.47 -3.82 -0.02 1.32 16 11 N -0.51 -9.75 4.34 -224.74 -0.97 -10.72 16 12 C 0.05 0.77 6.20 -2.84 -0.02 0.75 16 13 C -0.14 -1.67 6.97 -24.77 -0.17 -1.84 16 14 C -0.11 -1.33 6.49 -24.45 -0.16 -1.49 16 15 C 0.08 1.21 2.92 -67.34 -0.20 1.01 16 16 H 0.09 1.23 7.81 -51.93 -0.41 0.82 16 17 C 0.48 7.61 7.67 36.00 0.28 7.88 16 18 O -0.48 -9.81 17.24 -18.75 -0.32 -10.13 16 19 O -0.53 -6.15 13.42 -39.23 -0.53 -6.67 16 20 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 21 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 22 H 0.02 0.48 7.14 -51.93 -0.37 0.11 16 23 H 0.03 0.52 7.96 -51.93 -0.41 0.11 16 24 H 0.06 1.33 8.07 -51.93 -0.42 0.91 16 25 H 0.07 1.17 6.91 -51.93 -0.36 0.82 16 26 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.08 0.92 8.05 -51.93 -0.42 0.51 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.40 3.03 9.10 45.56 0.41 3.44 16 LS Contribution 265.24 15.07 4.00 4.00 Total: -1.00 -34.14 265.24 -6.57 -40.71 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: -3.63 Total: -1.95 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -0.84 Total: -5.55 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: -0.24 Total: -37.43 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.85 Total: -16.80 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -34.14 -6.57 -40.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035300858.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.601 kcal (2) G-P(sol) polarization free energy of solvation -34.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds