Wall clock time and date at job start Sun Mar 29 2020 22:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30677 * 1 3 3 Si 1.86798 * 120.00171 * 2 1 4 4 H 1.48496 * 109.47267 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46941 * 300.00314 * 3 2 1 6 6 H 1.48501 * 109.46955 * 60.00092 * 3 2 1 7 7 C 1.40044 * 119.99781 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00058 * 179.97438 * 7 2 1 9 9 C 1.46375 * 119.99972 * 0.02562 * 7 2 1 10 10 O 1.21682 * 120.00377 * 5.27706 * 9 7 2 11 11 N 1.34785 * 120.00017 * 185.00921 * 9 7 2 12 12 C 1.46928 * 120.62866 * 354.75097 * 11 9 7 13 13 C 1.52760 * 109.01095 * 233.58539 * 12 11 9 14 14 C 1.53036 * 109.37936 * 305.59031 * 13 12 11 15 15 C 1.53043 * 109.54165 * 61.24051 * 14 13 12 16 16 H 1.08993 * 109.49730 * 58.58146 * 15 14 13 17 17 C 1.53002 * 109.49863 * 178.68227 * 15 14 13 18 18 O 1.42898 * 109.46958 * 184.83593 * 17 15 14 19 19 C 1.46924 * 120.63273 * 175.03254 * 11 9 7 20 20 H 0.97005 * 119.99880 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.58748 * 353.42574 * 12 11 9 22 22 H 1.09005 * 109.58315 * 113.84025 * 12 11 9 23 23 H 1.08991 * 109.56529 * 185.55468 * 13 12 11 24 24 H 1.08994 * 109.38401 * 65.51485 * 13 12 11 25 25 H 1.08996 * 109.46309 * 301.21925 * 14 13 12 26 26 H 1.09002 * 109.45930 * 181.26095 * 14 13 12 27 27 H 1.08997 * 109.47139 * 304.83256 * 17 15 14 28 28 H 1.09000 * 109.47073 * 64.83638 * 17 15 14 29 29 H 0.96696 * 114.00112 * 179.97438 * 18 17 15 30 30 H 1.08995 * 109.58743 * 246.15749 * 19 11 9 31 31 H 1.09001 * 109.58655 * 6.57994 * 19 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7008 1.3463 -0.0006 5 1 1.8820 2.3964 -1.2125 6 1 1.8821 2.3964 1.2125 7 6 2.0069 -1.2128 -0.0005 8 1 3.0870 -1.2129 -0.0010 9 6 1.2750 -2.4805 -0.0017 10 8 0.0621 -2.4827 -0.0991 11 7 1.9450 -3.6456 0.0997 12 6 3.4141 -3.6670 0.0966 13 6 3.8954 -4.6312 -0.9861 14 6 3.2469 -6.0006 -0.7714 15 6 1.7260 -5.8695 -0.8803 16 1 1.4645 -5.4713 -1.8606 17 6 1.0805 -7.2447 -0.6982 18 8 -0.3287 -7.1414 -0.9114 19 6 1.2201 -4.9189 0.2093 20 1 -0.4850 0.8401 0.0004 21 1 3.7937 -2.6667 -0.1117 22 1 3.7767 -4.0025 1.0683 23 1 4.9795 -4.7295 -0.9316 24 1 3.6139 -4.2449 -1.9656 25 1 3.5090 -6.3755 0.2179 26 1 3.6067 -6.6958 -1.5300 27 1 1.5064 -7.9441 -1.4174 28 1 1.2695 -7.6036 0.3135 29 1 -0.8039 -7.9777 -0.8123 30 1 1.4001 -5.3586 1.1902 31 1 0.1526 -4.7443 0.0751 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036227694.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:45 Heat of formation + Delta-G solvation = -96.736600 kcal Electronic energy + Delta-G solvation = -14686.302507 eV Core-core repulsion = 12160.243011 eV Total energy + Delta-G solvation = -2526.059496 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.78098 -36.74400 -35.42491 -32.52463 -31.98262 -30.67041 -26.80529 -25.14698 -24.06935 -21.47664 -20.16807 -18.82443 -17.10751 -16.42906 -15.68732 -15.14064 -14.45322 -14.01083 -13.93645 -13.37603 -13.28523 -12.88776 -12.33367 -12.16215 -11.55874 -11.31478 -11.10187 -10.96293 -10.64202 -10.52837 -10.43595 -10.17282 -9.94451 -9.75768 -9.72041 -8.82103 -7.50112 -7.12613 -6.14823 -4.59577 3.15049 3.22899 3.27122 4.12132 4.38003 4.58690 4.66719 5.12606 5.23553 5.32849 5.44674 5.54187 5.78265 5.83034 5.95579 5.98813 6.05414 6.17917 6.26333 6.47403 6.58827 6.61104 6.82733 6.89006 7.50084 7.71721 7.81371 8.20390 8.42738 9.06766 9.51670 10.63667 10.82717 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.044861 B = 0.008758 C = 0.007547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.005338 B = 3196.374299 C = 3708.947929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.906 3.094 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.545 4.545 8 H 0.073 0.927 9 C 0.559 3.441 10 O -0.576 6.576 11 N -0.643 5.643 12 C 0.121 3.879 13 C -0.134 4.134 14 C -0.107 4.107 15 C -0.104 4.104 16 H 0.077 0.923 17 C 0.085 3.915 18 O -0.566 6.566 19 C 0.131 3.869 20 H 0.267 0.733 21 H 0.092 0.908 22 H 0.040 0.960 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.040 0.960 28 H 0.043 0.957 29 H 0.372 0.628 30 H 0.037 0.963 31 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.029 -10.865 -0.649 12.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.133 4.133 3 Si 0.731 3.269 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.581 4.581 8 H 0.091 0.909 9 C 0.364 3.636 10 O -0.458 6.458 11 N -0.381 5.381 12 C -0.004 4.004 13 C -0.173 4.173 14 C -0.144 4.144 15 C -0.124 4.124 16 H 0.096 0.904 17 C 0.007 3.993 18 O -0.370 6.370 19 C 0.007 3.993 20 H 0.078 0.922 21 H 0.110 0.890 22 H 0.058 0.942 23 H 0.082 0.918 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.218 0.782 30 H 0.055 0.945 31 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.329 -10.097 -0.793 11.943 hybrid contribution 0.480 0.059 0.086 0.491 sum 6.809 -10.038 -0.707 12.150 Atomic orbital electron populations 1.70039 1.07057 1.27099 1.35520 1.25742 0.94607 1.00291 0.92651 0.86342 0.80479 0.81895 0.78194 1.18769 1.20186 1.20188 1.21024 0.93573 0.89281 1.54268 0.90884 1.18269 0.86937 0.82267 0.76095 1.90594 1.14463 1.86137 1.54637 1.48201 1.04611 1.05864 1.79441 1.21325 0.82762 1.00232 0.96077 1.21865 0.99089 0.95491 1.00841 1.21439 0.94301 0.97553 1.01132 1.21566 0.94513 0.94334 1.01976 0.90421 1.22196 0.81279 0.97228 0.98635 1.86623 1.19607 1.36528 1.94280 1.21079 0.99039 0.84533 0.94648 0.92196 0.88995 0.94190 0.91808 0.91735 0.92215 0.92639 0.94180 0.93921 0.78209 0.94499 0.89212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.55 11.84 55.55 0.66 -22.89 16 2 C 0.09 2.46 5.50 -17.37 -0.10 2.36 16 3 Si 0.91 20.37 29.56 -169.99 -5.02 15.35 16 4 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.54 -15.64 8.86 -35.63 -0.32 -15.96 16 8 H 0.07 1.90 5.69 -52.49 -0.30 1.61 16 9 C 0.56 16.57 7.62 -12.98 -0.10 16.47 16 10 O -0.58 -19.47 14.46 5.21 0.08 -19.40 16 11 N -0.64 -15.41 2.98 -174.69 -0.52 -15.93 16 12 C 0.12 2.32 6.29 -3.93 -0.02 2.29 16 13 C -0.13 -2.09 6.07 -26.84 -0.16 -2.25 16 14 C -0.11 -1.51 5.17 -26.69 -0.14 -1.65 16 15 C -0.10 -1.78 2.58 -90.50 -0.23 -2.01 16 16 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 17 C 0.08 1.16 6.43 37.16 0.24 1.40 16 18 O -0.57 -8.55 13.30 -35.23 -0.47 -9.02 16 19 C 0.13 2.79 5.56 -3.71 -0.02 2.77 16 20 H 0.27 7.40 8.29 -40.82 -0.34 7.06 16 21 H 0.09 1.85 5.37 -51.93 -0.28 1.57 16 22 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.37 3.49 9.12 45.56 0.42 3.91 16 30 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 2.25 6.84 -51.93 -0.35 1.89 16 LS Contribution 256.11 15.07 3.86 3.86 Total: -1.00 -36.03 256.11 -5.73 -41.76 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -3.46 Total: 2.83 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: -0.85 Total: 3.43 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 0.14 Total: -38.82 kcal Atomic # 8 Polarization: -28.02 SS G_CDS: -0.39 Total: -28.41 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -36.03 -5.73 -41.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036227694.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.977 kcal (2) G-P(sol) polarization free energy of solvation -36.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds