Wall clock time and date at job start Sun Mar 29 2020 22:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30677 * 1 3 3 Si 1.86798 * 120.00171 * 2 1 4 4 H 1.48496 * 109.47267 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46941 * 300.00314 * 3 2 1 6 6 H 1.48501 * 109.46955 * 60.00092 * 3 2 1 7 7 C 1.40044 * 119.99781 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00058 * 179.97438 * 7 2 1 9 9 C 1.46375 * 119.99972 * 0.02562 * 7 2 1 10 10 O 1.21682 * 120.00377 * 5.27706 * 9 7 2 11 11 N 1.34785 * 120.00017 * 185.00921 * 9 7 2 12 12 C 1.46928 * 120.62866 * 354.75097 * 11 9 7 13 13 C 1.52760 * 109.01095 * 233.58539 * 12 11 9 14 14 C 1.53036 * 109.37936 * 305.59031 * 13 12 11 15 15 C 1.53043 * 109.54165 * 61.24051 * 14 13 12 16 16 H 1.08993 * 109.49730 * 58.58146 * 15 14 13 17 17 C 1.53002 * 109.49863 * 178.68227 * 15 14 13 18 18 O 1.42898 * 109.46958 * 184.83593 * 17 15 14 19 19 C 1.46924 * 120.63273 * 175.03254 * 11 9 7 20 20 H 0.97005 * 119.99880 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.58748 * 353.42574 * 12 11 9 22 22 H 1.09005 * 109.58315 * 113.84025 * 12 11 9 23 23 H 1.08991 * 109.56529 * 185.55468 * 13 12 11 24 24 H 1.08994 * 109.38401 * 65.51485 * 13 12 11 25 25 H 1.08996 * 109.46309 * 301.21925 * 14 13 12 26 26 H 1.09002 * 109.45930 * 181.26095 * 14 13 12 27 27 H 1.08997 * 109.47139 * 304.83256 * 17 15 14 28 28 H 1.09000 * 109.47073 * 64.83638 * 17 15 14 29 29 H 0.96696 * 114.00112 * 179.97438 * 18 17 15 30 30 H 1.08995 * 109.58743 * 246.15749 * 19 11 9 31 31 H 1.09001 * 109.58655 * 6.57994 * 19 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7008 1.3463 -0.0006 5 1 1.8820 2.3964 -1.2125 6 1 1.8821 2.3964 1.2125 7 6 2.0069 -1.2128 -0.0005 8 1 3.0870 -1.2129 -0.0010 9 6 1.2750 -2.4805 -0.0017 10 8 0.0621 -2.4827 -0.0991 11 7 1.9450 -3.6456 0.0997 12 6 3.4141 -3.6670 0.0966 13 6 3.8954 -4.6312 -0.9861 14 6 3.2469 -6.0006 -0.7714 15 6 1.7260 -5.8695 -0.8803 16 1 1.4645 -5.4713 -1.8606 17 6 1.0805 -7.2447 -0.6982 18 8 -0.3287 -7.1414 -0.9114 19 6 1.2201 -4.9189 0.2093 20 1 -0.4850 0.8401 0.0004 21 1 3.7937 -2.6667 -0.1117 22 1 3.7767 -4.0025 1.0683 23 1 4.9795 -4.7295 -0.9316 24 1 3.6139 -4.2449 -1.9656 25 1 3.5090 -6.3755 0.2179 26 1 3.6067 -6.6958 -1.5300 27 1 1.5064 -7.9441 -1.4174 28 1 1.2695 -7.6036 0.3135 29 1 -0.8039 -7.9777 -0.8123 30 1 1.4001 -5.3586 1.1902 31 1 0.1526 -4.7443 0.0751 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036227694.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:44 Heat of formation + Delta-G solvation = -125.994548 kcal Electronic energy + Delta-G solvation = -14687.571227 eV Core-core repulsion = 12160.243011 eV Total energy + Delta-G solvation = -2527.328216 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.43984 -38.34462 -37.02944 -34.69433 -33.64788 -32.18630 -28.82912 -26.53326 -25.81196 -22.86848 -21.85746 -20.52203 -18.38592 -18.22479 -17.78338 -16.54328 -16.26397 -15.62796 -15.45762 -14.82326 -14.73005 -14.41784 -14.15501 -13.60975 -13.43738 -13.07263 -12.80783 -12.75517 -12.37339 -12.02491 -11.86778 -11.73573 -11.38644 -11.35056 -10.95753 -10.86649 -9.77602 -9.05808 -8.29518 -6.84890 1.38711 1.39669 1.57676 2.23545 2.45247 2.87292 3.36332 3.56600 3.90680 4.00055 4.12045 4.23870 4.37867 4.51610 4.59861 4.73084 4.76947 4.83019 5.00319 5.03038 5.13288 5.21608 5.25901 5.40466 5.52506 5.80185 6.15875 6.42139 6.86775 6.99436 7.44422 8.47258 8.67660 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.044861 B = 0.008758 C = 0.007547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.005338 B = 3196.374299 C = 3708.947929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.024 3.976 3 Si 1.000 3.000 4 H -0.242 1.242 5 H -0.270 1.270 6 H -0.268 1.268 7 C -0.569 4.569 8 H 0.097 0.903 9 C 0.536 3.464 10 O -0.637 6.637 11 N -0.648 5.648 12 C 0.112 3.888 13 C -0.128 4.128 14 C -0.099 4.099 15 C -0.101 4.101 16 H 0.042 0.958 17 C 0.087 3.913 18 O -0.601 6.601 19 C 0.129 3.871 20 H 0.273 0.727 21 H 0.078 0.922 22 H 0.064 0.936 23 H 0.105 0.895 24 H 0.043 0.957 25 H 0.082 0.918 26 H 0.090 0.910 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.395 0.605 30 H 0.056 0.944 31 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.180 -11.818 -0.517 15.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.191 4.191 3 Si 0.819 3.181 4 H -0.165 1.165 5 H -0.195 1.195 6 H -0.193 1.193 7 C -0.605 4.605 8 H 0.114 0.886 9 C 0.342 3.658 10 O -0.525 6.525 11 N -0.384 5.384 12 C -0.011 4.011 13 C -0.167 4.167 14 C -0.136 4.136 15 C -0.120 4.120 16 H 0.060 0.940 17 C 0.009 3.991 18 O -0.410 6.410 19 C 0.006 3.994 20 H 0.083 0.917 21 H 0.096 0.904 22 H 0.082 0.918 23 H 0.124 0.876 24 H 0.062 0.938 25 H 0.100 0.900 26 H 0.108 0.892 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.245 0.755 30 H 0.074 0.926 31 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 9.533 -11.128 -0.656 14.668 hybrid contribution -0.531 0.267 0.068 0.598 sum 9.002 -10.861 -0.588 14.119 Atomic orbital electron populations 1.70231 1.09747 1.28829 1.36780 1.27101 0.95542 1.05232 0.91182 0.84942 0.79513 0.75141 0.78497 1.16488 1.19486 1.19266 1.21562 0.94863 0.89663 1.54405 0.88564 1.18790 0.86597 0.84497 0.75950 1.90535 1.16987 1.87546 1.57400 1.48121 1.06887 1.05317 1.78121 1.21610 0.79570 1.01011 0.98872 1.21837 1.01592 0.95197 0.98045 1.21441 0.91218 0.97322 1.03635 1.21536 0.97418 0.95076 0.98004 0.93976 1.22241 0.80537 0.95358 1.00926 1.86577 1.20892 1.38979 1.94527 1.21166 0.96173 0.84602 0.97479 0.91666 0.90375 0.91816 0.87642 0.93764 0.89960 0.89180 0.90785 0.91751 0.75506 0.92568 0.94384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -52.78 11.84 21.84 0.26 -52.52 16 2 C 0.02 1.37 5.50 85.30 0.47 1.84 16 3 Si 1.00 41.95 29.56 68.60 2.03 43.98 16 4 H -0.24 -9.21 7.11 99.48 0.71 -8.50 16 5 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 6 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 7 C -0.57 -33.41 8.86 24.83 0.22 -33.19 16 8 H 0.10 5.00 5.69 -2.91 -0.02 4.99 16 9 C 0.54 33.31 7.62 86.36 0.66 33.97 16 10 O -0.64 -46.07 14.46 -4.29 -0.06 -46.13 16 11 N -0.65 -31.79 2.98 -824.82 -2.46 -34.24 16 12 C 0.11 4.15 6.29 86.22 0.54 4.69 16 13 C -0.13 -3.62 6.07 30.53 0.19 -3.43 16 14 C -0.10 -2.41 5.17 30.62 0.16 -2.25 16 15 C -0.10 -3.33 2.58 -10.71 -0.03 -3.36 16 16 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 17 C 0.09 2.17 6.43 71.98 0.46 2.64 16 18 O -0.60 -17.91 13.30 -148.98 -1.98 -19.89 16 19 C 0.13 5.65 5.56 86.36 0.48 6.13 16 20 H 0.27 15.75 8.29 -92.70 -0.77 14.98 16 21 H 0.08 3.07 5.37 -2.39 -0.01 3.06 16 22 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 23 H 0.11 2.15 8.14 -2.39 -0.02 2.14 16 24 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.40 6.97 9.12 -74.06 -0.68 6.29 16 30 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.04 2.03 6.84 -2.39 -0.02 2.02 16 Total: -1.00 -85.20 256.11 1.39 -83.82 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: 0.46 Total: 17.95 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: 3.15 Total: 7.04 kcal Atomic # 7 Polarization: -84.56 SS G_CDS: -2.20 Total: -86.76 kcal Atomic # 8 Polarization: -63.98 SS G_CDS: -2.04 Total: -66.02 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -85.20 1.39 -83.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036227694.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.179 kcal (2) G-P(sol) polarization free energy of solvation -85.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds