Wall clock time and date at job start Sun Mar 29 2020 22:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.51570 * 2 1 4 4 C 1.53295 * 109.51510 * 239.85196 * 2 1 3 5 5 N 1.47155 * 108.38278 * 292.37525 * 4 2 1 6 6 C 1.34777 * 120.97971 * 129.44045 * 5 4 2 7 7 O 1.21695 * 119.99552 * 175.36310 * 6 5 4 8 8 C 1.46369 * 120.00203 * 355.36417 * 6 5 4 9 9 H 1.08003 * 120.00031 * 7.58005 * 8 6 5 10 10 C 1.40049 * 120.00125 * 187.58547 * 8 6 5 11 11 N 1.30674 * 119.99897 * 359.97438 * 10 8 6 12 12 Si 1.86800 * 120.00289 * 179.97438 * 10 8 6 13 13 H 1.48508 * 109.46700 * 89.99930 * 12 10 8 14 14 H 1.48494 * 109.47355 * 209.99824 * 12 10 8 15 15 H 1.48500 * 109.47071 * 330.00187 * 12 10 8 16 16 C 1.47152 * 118.03504 * 309.46823 * 5 4 2 17 17 C 1.53293 * 108.38803 * 50.53544 * 16 5 4 18 18 O 1.42964 * 109.21994 * 307.69351 * 17 16 5 19 19 H 1.08991 * 109.47391 * 299.89668 * 1 2 3 20 20 H 1.09001 * 109.46853 * 179.89331 * 1 2 3 21 21 H 1.09008 * 109.47059 * 59.89927 * 1 2 3 22 22 H 1.09003 * 109.46393 * 59.99778 * 3 2 1 23 23 H 1.09003 * 109.47525 * 179.97438 * 3 2 1 24 24 H 1.09001 * 109.47182 * 300.00457 * 3 2 1 25 25 H 1.08997 * 109.68736 * 52.09600 * 4 2 1 26 26 H 1.09010 * 109.68550 * 172.65825 * 4 2 1 27 27 H 0.97003 * 120.00107 * 179.97438 * 11 10 8 28 28 H 1.08995 * 109.68278 * 290.80290 * 16 5 4 29 29 H 1.09011 * 109.67804 * 170.25760 * 16 5 4 30 30 H 1.09001 * 109.51186 * 187.77901 * 17 16 5 31 31 H 1.08992 * 109.55764 * 67.64268 * 17 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0411 1.4421 0.0000 4 6 2.0420 -0.7257 -1.2494 5 7 1.6960 -2.1512 -1.1327 6 6 1.0708 -2.7978 -2.1365 7 8 0.8686 -3.9951 -2.0561 8 6 0.6353 -2.0600 -3.3232 9 1 0.9208 -1.0263 -3.4514 10 6 -0.1518 -2.6944 -4.2924 11 7 -0.4969 -3.9452 -4.1376 12 14 -0.7083 -1.7526 -5.8066 13 1 0.3021 -1.9062 -6.8841 14 1 -2.0128 -2.2886 -6.2713 15 1 -0.8563 -0.3142 -5.4683 16 6 2.0521 -2.8496 0.1126 17 6 1.5395 -2.0205 1.2956 18 8 2.0075 -0.6759 1.1658 19 1 -0.3634 0.5122 0.8908 20 1 -0.3633 -1.0277 -0.0019 21 1 -0.3633 0.5154 -0.8891 22 1 1.6780 1.9562 0.8900 23 1 3.1311 1.4414 0.0005 24 1 1.6781 1.9563 -0.8899 25 1 1.5704 -0.3051 -2.1375 26 1 3.1242 -0.6153 -1.3205 27 1 -1.0423 -4.3845 -4.8087 28 1 3.1352 -2.9531 0.1786 29 1 1.5872 -3.8355 0.1264 30 1 1.9113 -2.4469 2.2273 31 1 0.4497 -2.0277 1.3012 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036232601.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:16 Heat of formation + Delta-G solvation = -81.081785 kcal Electronic energy + Delta-G solvation = -15127.560389 eV Core-core repulsion = 12602.179737 eV Total energy + Delta-G solvation = -2525.380652 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.49370 -36.75718 -33.42009 -33.21776 -32.35024 -28.83146 -27.08571 -26.14185 -25.17426 -22.61222 -19.74700 -18.74647 -16.77571 -16.01933 -15.65900 -14.96680 -14.45481 -14.29789 -14.17128 -13.47610 -12.81517 -12.56689 -12.21872 -11.88769 -11.63600 -11.45655 -11.37234 -11.28808 -10.96848 -10.95135 -10.72244 -10.28336 -10.10395 -9.82755 -9.36340 -8.89027 -7.63453 -7.19655 -6.24622 -4.69020 3.10632 3.17575 3.20234 4.01302 4.11679 4.49214 4.51533 5.17983 5.33709 5.38236 5.54528 5.64841 5.80038 5.86613 5.92037 5.97686 6.07692 6.13187 6.25188 6.39874 6.42994 6.47414 6.54850 6.72159 7.40602 7.51499 7.65026 8.07426 8.29885 8.97655 9.37739 10.52605 10.70935 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.037165 B = 0.010934 C = 0.009150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.214798 B = 2560.274267 C = 3059.207678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.094 3.906 3 C -0.133 4.133 4 C 0.102 3.898 5 N -0.643 5.643 6 C 0.561 3.439 7 O -0.578 6.578 8 C -0.543 4.543 9 H 0.072 0.928 10 C 0.088 3.912 11 N -0.768 5.768 12 Si 0.906 3.094 13 H -0.271 1.271 14 H -0.279 1.279 15 H -0.264 1.264 16 C 0.086 3.914 17 C 0.047 3.953 18 O -0.382 6.382 19 H 0.051 0.949 20 H 0.067 0.933 21 H 0.067 0.933 22 H 0.059 0.941 23 H 0.060 0.940 24 H 0.071 0.929 25 H 0.100 0.900 26 H 0.048 0.952 27 H 0.269 0.731 28 H 0.048 0.952 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.199 8.745 5.899 10.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.054 3.946 3 C -0.191 4.191 4 C -0.022 4.022 5 N -0.382 5.382 6 C 0.367 3.633 7 O -0.460 6.460 8 C -0.580 4.580 9 H 0.090 0.910 10 C -0.132 4.132 11 N -0.397 5.397 12 Si 0.731 3.269 13 H -0.197 1.197 14 H -0.204 1.204 15 H -0.188 1.188 16 C -0.038 4.038 17 C -0.030 4.030 18 O -0.302 6.302 19 H 0.070 0.930 20 H 0.086 0.914 21 H 0.086 0.914 22 H 0.078 0.922 23 H 0.079 0.921 24 H 0.090 0.910 25 H 0.118 0.882 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.066 0.934 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.094 7.975 5.982 10.187 hybrid contribution -0.405 0.333 -0.882 1.026 sum 1.688 8.308 5.101 9.894 Atomic orbital electron populations 1.22275 0.95412 1.03265 1.01666 1.21943 0.93732 0.92410 0.86502 1.21696 1.01588 0.93589 1.02202 1.22082 0.98808 0.83445 0.97897 1.48246 1.64462 1.09012 1.16446 1.18262 0.76372 0.86678 0.81955 1.90592 1.59687 1.15225 1.80530 1.20925 1.34425 0.98421 1.04218 0.90976 1.25723 0.94437 0.94488 0.98527 1.70007 1.27025 1.10327 1.32350 0.86394 0.78425 0.80435 0.81683 1.19662 1.20420 1.18834 1.21792 0.98922 0.97634 0.85458 1.22962 0.98959 0.82700 0.98382 1.87863 1.72707 1.25738 1.43880 0.92965 0.91433 0.91409 0.92195 0.92062 0.91026 0.88243 0.93383 0.92031 0.93381 0.89214 0.89161 0.92823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.82 8.09 37.15 0.30 -2.52 16 2 C 0.09 1.58 1.11 -90.47 -0.10 1.48 16 3 C -0.13 -1.75 8.85 37.16 0.33 -1.43 16 4 C 0.10 1.99 5.22 -3.53 -0.02 1.97 16 5 N -0.64 -14.98 2.54 -173.93 -0.44 -15.42 16 6 C 0.56 16.02 7.62 -12.99 -0.10 15.92 16 7 O -0.58 -18.75 14.55 5.19 0.08 -18.67 16 8 C -0.54 -15.08 8.86 -35.63 -0.32 -15.40 16 9 H 0.07 1.82 5.73 -52.48 -0.30 1.52 16 10 C 0.09 2.43 5.50 -17.37 -0.10 2.33 16 11 N -0.77 -22.85 11.86 55.55 0.66 -22.19 16 12 Si 0.91 19.82 29.56 -169.99 -5.02 14.80 16 13 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 14 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 15 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 16 C 0.09 1.76 6.62 -3.53 -0.02 1.74 16 17 C 0.05 0.81 6.60 37.31 0.25 1.06 16 18 O -0.38 -6.73 10.23 -35.23 -0.36 -7.09 16 19 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 20 H 0.07 1.31 6.11 -51.93 -0.32 0.99 16 21 H 0.07 1.09 8.14 -51.92 -0.42 0.67 16 22 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.10 1.97 5.40 -51.93 -0.28 1.69 16 26 H 0.05 0.89 8.14 -51.92 -0.42 0.47 16 27 H 0.27 7.25 8.29 -40.82 -0.34 6.92 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.09 1.98 7.12 -51.92 -0.37 1.61 16 30 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.05 0.94 6.26 -51.93 -0.32 0.62 16 LS Contribution 252.57 15.07 3.81 3.81 Total: -1.00 -33.34 252.57 -5.17 -38.52 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -4.11 Total: 1.10 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: 0.22 Total: 5.15 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: 0.22 Total: -37.61 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.28 Total: -25.76 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -33.34 -5.17 -38.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036232601.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.567 kcal (2) G-P(sol) polarization free energy of solvation -33.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds