Wall clock time and date at job start Sun Mar 29 2020 22:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.51570 * 2 1 4 4 C 1.53295 * 109.51510 * 239.85196 * 2 1 3 5 5 N 1.47155 * 108.38278 * 292.37525 * 4 2 1 6 6 C 1.34777 * 120.97971 * 129.44045 * 5 4 2 7 7 O 1.21695 * 119.99552 * 175.36310 * 6 5 4 8 8 C 1.46369 * 120.00203 * 355.36417 * 6 5 4 9 9 H 1.08003 * 120.00031 * 7.58005 * 8 6 5 10 10 C 1.40049 * 120.00125 * 187.58547 * 8 6 5 11 11 N 1.30674 * 119.99897 * 359.97438 * 10 8 6 12 12 Si 1.86800 * 120.00289 * 179.97438 * 10 8 6 13 13 H 1.48508 * 109.46700 * 89.99930 * 12 10 8 14 14 H 1.48494 * 109.47355 * 209.99824 * 12 10 8 15 15 H 1.48500 * 109.47071 * 330.00187 * 12 10 8 16 16 C 1.47152 * 118.03504 * 309.46823 * 5 4 2 17 17 C 1.53293 * 108.38803 * 50.53544 * 16 5 4 18 18 O 1.42964 * 109.21994 * 307.69351 * 17 16 5 19 19 H 1.08991 * 109.47391 * 299.89668 * 1 2 3 20 20 H 1.09001 * 109.46853 * 179.89331 * 1 2 3 21 21 H 1.09008 * 109.47059 * 59.89927 * 1 2 3 22 22 H 1.09003 * 109.46393 * 59.99778 * 3 2 1 23 23 H 1.09003 * 109.47525 * 179.97438 * 3 2 1 24 24 H 1.09001 * 109.47182 * 300.00457 * 3 2 1 25 25 H 1.08997 * 109.68736 * 52.09600 * 4 2 1 26 26 H 1.09010 * 109.68550 * 172.65825 * 4 2 1 27 27 H 0.97003 * 120.00107 * 179.97438 * 11 10 8 28 28 H 1.08995 * 109.68278 * 290.80290 * 16 5 4 29 29 H 1.09011 * 109.67804 * 170.25760 * 16 5 4 30 30 H 1.09001 * 109.51186 * 187.77901 * 17 16 5 31 31 H 1.08992 * 109.55764 * 67.64268 * 17 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0411 1.4421 0.0000 4 6 2.0420 -0.7257 -1.2494 5 7 1.6960 -2.1512 -1.1327 6 6 1.0708 -2.7978 -2.1365 7 8 0.8686 -3.9951 -2.0561 8 6 0.6353 -2.0600 -3.3232 9 1 0.9208 -1.0263 -3.4514 10 6 -0.1518 -2.6944 -4.2924 11 7 -0.4969 -3.9452 -4.1376 12 14 -0.7083 -1.7526 -5.8066 13 1 0.3021 -1.9062 -6.8841 14 1 -2.0128 -2.2886 -6.2713 15 1 -0.8563 -0.3142 -5.4683 16 6 2.0521 -2.8496 0.1126 17 6 1.5395 -2.0205 1.2956 18 8 2.0075 -0.6759 1.1658 19 1 -0.3634 0.5122 0.8908 20 1 -0.3633 -1.0277 -0.0019 21 1 -0.3633 0.5154 -0.8891 22 1 1.6780 1.9562 0.8900 23 1 3.1311 1.4414 0.0005 24 1 1.6781 1.9563 -0.8899 25 1 1.5704 -0.3051 -2.1375 26 1 3.1242 -0.6153 -1.3205 27 1 -1.0423 -4.3845 -4.8087 28 1 3.1352 -2.9531 0.1786 29 1 1.5872 -3.8355 0.1264 30 1 1.9113 -2.4469 2.2273 31 1 0.4497 -2.0277 1.3012 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036232601.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:15 Heat of formation + Delta-G solvation = -105.019224 kcal Electronic energy + Delta-G solvation = -15128.598394 eV Core-core repulsion = 12602.179737 eV Total energy + Delta-G solvation = -2526.418658 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.04957 -38.73033 -35.20188 -34.83756 -34.30182 -30.45824 -28.50669 -27.92437 -26.80995 -24.22550 -21.51599 -20.35289 -18.65332 -17.85378 -17.31647 -16.53780 -16.13945 -16.02122 -15.63298 -15.19027 -14.47439 -14.20036 -13.86732 -13.30542 -13.23812 -13.00660 -12.87833 -12.74949 -12.71436 -12.46182 -12.13649 -12.04858 -11.98036 -11.32126 -10.97416 -10.85623 -9.82716 -9.05682 -8.32070 -6.86530 1.39139 1.40467 1.55673 2.21160 2.43204 2.62583 2.88501 3.55340 3.81362 3.99828 4.08192 4.12543 4.25660 4.45704 4.62718 4.63999 4.77141 4.83998 4.89123 4.95781 4.99973 5.07172 5.26633 5.34797 5.40792 5.68478 6.07298 6.26041 6.31890 6.85271 7.35631 8.41945 8.64164 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.037165 B = 0.010934 C = 0.009150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.214798 B = 2560.274267 C = 3059.207678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.094 3.906 3 C -0.127 4.127 4 C 0.097 3.903 5 N -0.646 5.646 6 C 0.543 3.457 7 O -0.633 6.633 8 C -0.565 4.565 9 H 0.094 0.906 10 C 0.029 3.971 11 N -0.824 5.824 12 Si 0.994 3.006 13 H -0.263 1.263 14 H -0.274 1.274 15 H -0.243 1.243 16 C 0.081 3.919 17 C 0.058 3.942 18 O -0.381 6.381 19 H 0.075 0.925 20 H 0.031 0.969 21 H 0.072 0.928 22 H 0.075 0.925 23 H 0.068 0.932 24 H 0.088 0.912 25 H 0.094 0.906 26 H 0.059 0.941 27 H 0.274 0.726 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.127 0.873 31 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.453 11.582 5.887 13.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.054 3.946 3 C -0.184 4.184 4 C -0.026 4.026 5 N -0.383 5.383 6 C 0.349 3.651 7 O -0.521 6.521 8 C -0.601 4.601 9 H 0.112 0.888 10 C -0.186 4.186 11 N -0.453 5.453 12 Si 0.813 3.187 13 H -0.188 1.188 14 H -0.199 1.199 15 H -0.166 1.166 16 C -0.043 4.043 17 C -0.020 4.020 18 O -0.301 6.301 19 H 0.094 0.906 20 H 0.050 0.950 21 H 0.091 0.909 22 H 0.094 0.906 23 H 0.087 0.913 24 H 0.106 0.894 25 H 0.112 0.888 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.145 0.855 31 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.383 10.868 6.017 12.649 hybrid contribution -0.427 -0.571 -0.810 1.079 sum 1.957 10.297 5.207 11.703 Atomic orbital electron populations 1.22242 0.95547 1.01335 1.03068 1.22080 0.93678 0.94047 0.84775 1.21702 1.02098 0.90768 1.03856 1.22326 0.99528 0.81283 0.99494 1.48109 1.63265 1.10725 1.16246 1.18693 0.76636 0.86316 0.83409 1.90538 1.62067 1.17504 1.81975 1.21433 1.34697 0.99513 1.04497 0.88791 1.26999 0.93869 0.95349 1.02350 1.70186 1.28143 1.12852 1.34161 0.85065 0.77901 0.79466 0.76220 1.18771 1.19890 1.16603 1.21961 0.99472 0.97036 0.85786 1.22927 0.98546 0.82349 0.98135 1.87883 1.72746 1.25474 1.43963 0.90647 0.94959 0.90930 0.90598 0.91299 0.89362 0.88789 0.92251 0.91582 0.92198 0.91894 0.85544 0.93605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.22 8.09 71.98 0.58 -4.64 16 2 C 0.09 2.93 1.11 -10.70 -0.01 2.92 16 3 C -0.13 -2.85 8.85 71.98 0.64 -2.21 16 4 C 0.10 3.66 5.22 86.35 0.45 4.11 16 5 N -0.65 -30.53 2.54 -822.41 -2.09 -32.61 16 6 C 0.54 32.04 7.62 86.36 0.66 32.70 16 7 O -0.63 -43.26 14.55 -4.33 -0.06 -43.33 16 8 C -0.57 -31.72 8.86 24.83 0.22 -31.50 16 9 H 0.09 4.67 5.73 -2.91 -0.02 4.66 16 10 C 0.03 1.62 5.50 85.30 0.47 2.09 16 11 N -0.82 -50.55 11.86 21.84 0.26 -50.29 16 12 Si 0.99 40.30 29.56 68.60 2.03 42.33 16 13 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 14 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 15 H -0.24 -8.94 7.11 99.48 0.71 -8.23 16 16 C 0.08 3.35 6.62 86.35 0.57 3.92 16 17 C 0.06 1.90 6.60 72.08 0.48 2.38 16 18 O -0.38 -12.42 10.23 -148.98 -1.52 -13.94 16 19 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 20 H 0.03 1.24 6.11 -2.39 -0.01 1.22 16 21 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 22 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 23 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.09 3.61 5.40 -2.39 -0.01 3.59 16 26 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 27 H 0.27 15.24 8.29 -92.71 -0.77 14.48 16 28 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.06 2.92 7.12 -2.38 -0.02 2.90 16 30 H 0.13 3.25 8.14 -2.39 -0.02 3.23 16 31 H 0.05 1.60 6.26 -2.39 -0.01 1.58 16 Total: -1.00 -74.91 252.57 3.79 -71.12 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: 1.12 Total: 16.96 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: 4.05 Total: 9.77 kcal Atomic # 7 Polarization: -81.08 SS G_CDS: -1.83 Total: -82.91 kcal Atomic # 8 Polarization: -55.68 SS G_CDS: -1.59 Total: -57.27 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.33 kcal Total: -74.91 3.79 -71.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036232601.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.896 kcal (2) G-P(sol) polarization free energy of solvation -74.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds