Wall clock time and date at job start Sun Mar 29 2020 22:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52992 * 109.47390 * 2 1 4 4 H 1.09004 * 109.71339 * 298.22252 * 3 2 1 5 5 C 1.53718 * 109.74764 * 58.99337 * 3 2 1 6 6 O 1.42957 * 109.15000 * 172.16813 * 5 3 2 7 7 C 1.42962 * 114.16475 * 297.29019 * 6 5 3 8 8 C 1.53300 * 109.22647 * 62.58013 * 7 6 5 9 9 N 1.47146 * 108.38199 * 307.69969 * 8 7 6 10 10 C 1.34777 * 120.98234 * 230.51017 * 9 8 7 11 11 O 1.21684 * 120.00029 * 185.32977 * 10 9 8 12 12 C 1.46377 * 119.99792 * 5.32867 * 10 9 8 13 13 H 1.07993 * 120.00095 * 354.42982 * 12 10 9 14 14 C 1.40050 * 119.99822 * 174.71123 * 12 10 9 15 15 N 1.30674 * 120.00062 * 359.71866 * 14 12 10 16 16 Si 1.86804 * 119.99947 * 179.72675 * 14 12 10 17 17 H 1.48503 * 109.46800 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.46993 * 119.99703 * 16 14 12 19 19 H 1.48501 * 109.46562 * 239.99932 * 16 14 12 20 20 H 1.09005 * 109.47120 * 294.92993 * 1 2 3 21 21 H 1.09002 * 109.47242 * 54.93285 * 1 2 3 22 22 H 1.09005 * 109.47356 * 174.93207 * 1 2 3 23 23 H 1.09003 * 109.46888 * 240.00003 * 2 1 3 24 24 H 1.08996 * 109.47349 * 120.00420 * 2 1 3 25 25 H 1.08998 * 109.65332 * 52.19936 * 5 3 2 26 26 H 1.09004 * 109.43848 * 292.00226 * 5 3 2 27 27 H 1.09002 * 109.51125 * 302.65488 * 7 6 5 28 28 H 1.08998 * 109.55691 * 182.53123 * 7 6 5 29 29 H 1.08996 * 109.68135 * 187.97310 * 8 7 6 30 30 H 1.09002 * 109.67841 * 67.41989 * 8 7 6 31 31 H 0.96998 * 119.99667 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.7050 1.9508 -0.9042 5 6 1.5105 2.1805 1.2400 6 8 2.1370 3.4627 1.3257 7 6 3.5550 3.4107 1.4998 8 6 4.1891 2.7347 0.2787 9 7 3.5104 1.4483 0.0559 10 6 4.2150 0.3097 -0.0981 11 8 3.6425 -0.7270 -0.3776 12 6 5.6690 0.3202 0.0710 13 1 6.1873 1.2542 0.2298 14 6 6.3885 -0.8803 0.0208 15 7 5.7612 -2.0104 -0.1714 16 14 8.2448 -0.8660 0.2289 17 1 8.7094 0.5299 0.4314 18 1 8.6170 -1.6880 1.4082 19 1 8.8836 -1.4283 -0.9881 20 1 -0.3633 0.4332 0.9319 21 1 -0.3634 0.5904 -0.8411 22 1 -0.3634 -1.0237 -0.0908 23 1 1.8932 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 1.7389 1.6030 2.1358 26 1 0.4314 2.3077 1.1533 27 1 3.7909 2.8377 2.3966 28 1 3.9476 4.4225 1.6006 29 1 5.2495 2.5633 0.4634 30 1 4.0667 3.3710 -0.5978 31 1 6.2596 -2.8419 -0.2057 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036326867.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:33 Heat of formation + Delta-G solvation = -71.251185 kcal Electronic energy + Delta-G solvation = -15080.586262 eV Core-core repulsion = 12555.631896 eV Total energy + Delta-G solvation = -2524.954365 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.28053 -36.76419 -34.07623 -33.03441 -32.42486 -29.14206 -27.04225 -25.79819 -24.01224 -21.60950 -20.82853 -18.91059 -16.68886 -15.90119 -15.71832 -14.95544 -14.62012 -14.36945 -14.04200 -13.80394 -12.80916 -12.78984 -12.32215 -11.94583 -11.67925 -11.26803 -11.13412 -11.01023 -10.84676 -10.62830 -10.29551 -10.04965 -9.96382 -9.93538 -9.48187 -8.89964 -7.21972 -7.16180 -6.19293 -4.69916 3.08779 3.17468 3.21063 4.01543 4.22505 4.44853 4.50667 5.37410 5.53467 5.56461 5.59377 5.70266 5.77010 5.87535 5.93661 6.06600 6.11524 6.21138 6.34221 6.37756 6.52326 6.59271 7.08419 7.36820 7.39956 7.51772 7.60050 8.10581 8.29541 8.97470 9.38117 10.52324 10.71061 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.035586 B = 0.011045 C = 0.008749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.639820 B = 2534.491023 C = 3199.683930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.109 4.109 3 C 0.124 3.876 4 H 0.053 0.947 5 C 0.052 3.948 6 O -0.392 6.392 7 C 0.046 3.954 8 C 0.088 3.912 9 N -0.643 5.643 10 C 0.560 3.440 11 O -0.566 6.566 12 C -0.545 4.545 13 H 0.072 0.928 14 C 0.089 3.911 15 N -0.766 5.766 16 Si 0.906 3.094 17 H -0.264 1.264 18 H -0.276 1.276 19 H -0.276 1.276 20 H 0.042 0.958 21 H 0.045 0.955 22 H 0.050 0.950 23 H 0.104 0.896 24 H 0.066 0.934 25 H 0.049 0.951 26 H 0.091 0.909 27 H 0.051 0.949 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.049 0.951 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.598 7.044 2.413 8.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.146 4.146 3 C 0.019 3.981 4 H 0.071 0.929 5 C -0.026 4.026 6 O -0.311 6.311 7 C -0.032 4.032 8 C -0.037 4.037 9 N -0.383 5.383 10 C 0.367 3.633 11 O -0.449 6.449 12 C -0.582 4.582 13 H 0.090 0.910 14 C -0.131 4.131 15 N -0.395 5.395 16 Si 0.730 3.270 17 H -0.188 1.188 18 H -0.202 1.202 19 H -0.201 1.201 20 H 0.061 0.939 21 H 0.065 0.935 22 H 0.069 0.931 23 H 0.122 0.878 24 H 0.084 0.916 25 H 0.068 0.932 26 H 0.109 0.891 27 H 0.069 0.931 28 H 0.110 0.890 29 H 0.119 0.881 30 H 0.067 0.933 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.994 6.419 2.223 7.881 hybrid contribution 1.102 -0.083 0.175 1.119 sum -2.892 6.336 2.398 7.366 Atomic orbital electron populations 1.22048 0.98509 1.00947 1.00285 1.22000 0.91699 0.94534 1.06410 1.21654 0.83048 0.97217 0.96167 0.92906 1.23194 0.96927 0.84484 0.97984 1.87828 1.20392 1.28753 1.94102 1.23010 0.81295 1.00832 0.98027 1.22091 0.99130 0.86167 0.96305 1.48338 1.03620 1.07838 1.78507 1.18205 0.87845 0.80617 0.76652 1.90561 1.70388 1.31234 1.52675 1.21028 0.90532 0.93912 1.52731 0.91020 1.25708 0.99777 0.95023 0.92611 1.70009 1.36404 0.98292 1.34811 0.86347 0.83168 0.79118 0.78340 1.18755 1.20162 1.20130 0.93882 0.93549 0.93084 0.87756 0.91562 0.93222 0.89060 0.93055 0.89023 0.88108 0.93281 0.92114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 9.40 37.15 0.35 -2.21 16 2 C -0.11 -2.28 3.93 -26.74 -0.11 -2.38 16 3 C 0.12 2.51 3.24 -67.20 -0.22 2.29 16 4 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 5 C 0.05 0.91 5.68 37.53 0.21 1.12 16 6 O -0.39 -6.98 10.74 -35.23 -0.38 -7.36 16 7 C 0.05 0.76 6.98 37.31 0.26 1.02 16 8 C 0.09 1.68 6.55 -3.53 -0.02 1.65 16 9 N -0.64 -14.82 3.01 -166.15 -0.50 -15.32 16 10 C 0.56 15.55 7.45 -12.99 -0.10 15.46 16 11 O -0.57 -17.20 10.78 5.20 0.06 -17.14 16 12 C -0.55 -14.96 8.88 -35.63 -0.32 -15.28 16 13 H 0.07 1.80 5.69 -52.49 -0.30 1.50 16 14 C 0.09 2.41 5.50 -17.37 -0.10 2.32 16 15 N -0.77 -22.35 11.84 55.55 0.66 -21.69 16 16 Si 0.91 19.71 29.56 -169.99 -5.02 14.68 16 17 H -0.26 -5.52 7.11 56.52 0.40 -5.11 16 18 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 19 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 20 H 0.04 0.61 6.91 -51.93 -0.36 0.25 16 21 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.10 2.55 6.12 -51.93 -0.32 2.23 16 24 H 0.07 1.56 7.42 -51.93 -0.39 1.17 16 25 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.09 1.37 7.03 -51.93 -0.36 1.00 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.10 1.95 5.40 -51.93 -0.28 1.67 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.27 7.10 8.29 -40.82 -0.34 6.77 16 LS Contribution 248.73 15.07 3.75 3.75 Total: -1.00 -31.66 248.73 -5.57 -37.23 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -4.10 Total: 1.87 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: -0.03 Total: 3.99 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: 0.16 Total: -37.01 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -0.32 Total: -24.50 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.68 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -31.66 -5.57 -37.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036326867.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.020 kcal (2) G-P(sol) polarization free energy of solvation -31.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds