Wall clock time and date at job start Sun Mar 29 2020 22:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52992 * 109.47390 * 2 1 4 4 H 1.09004 * 109.71339 * 298.22252 * 3 2 1 5 5 C 1.53718 * 109.74764 * 58.99337 * 3 2 1 6 6 O 1.42957 * 109.15000 * 172.16813 * 5 3 2 7 7 C 1.42962 * 114.16475 * 297.29019 * 6 5 3 8 8 C 1.53300 * 109.22647 * 62.58013 * 7 6 5 9 9 N 1.47146 * 108.38199 * 307.69969 * 8 7 6 10 10 C 1.34777 * 120.98234 * 230.51017 * 9 8 7 11 11 O 1.21684 * 120.00029 * 185.32977 * 10 9 8 12 12 C 1.46377 * 119.99792 * 5.32867 * 10 9 8 13 13 H 1.07993 * 120.00095 * 354.42982 * 12 10 9 14 14 C 1.40050 * 119.99822 * 174.71123 * 12 10 9 15 15 N 1.30674 * 120.00062 * 359.71866 * 14 12 10 16 16 Si 1.86804 * 119.99947 * 179.72675 * 14 12 10 17 17 H 1.48503 * 109.46800 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.46993 * 119.99703 * 16 14 12 19 19 H 1.48501 * 109.46562 * 239.99932 * 16 14 12 20 20 H 1.09005 * 109.47120 * 294.92993 * 1 2 3 21 21 H 1.09002 * 109.47242 * 54.93285 * 1 2 3 22 22 H 1.09005 * 109.47356 * 174.93207 * 1 2 3 23 23 H 1.09003 * 109.46888 * 240.00003 * 2 1 3 24 24 H 1.08996 * 109.47349 * 120.00420 * 2 1 3 25 25 H 1.08998 * 109.65332 * 52.19936 * 5 3 2 26 26 H 1.09004 * 109.43848 * 292.00226 * 5 3 2 27 27 H 1.09002 * 109.51125 * 302.65488 * 7 6 5 28 28 H 1.08998 * 109.55691 * 182.53123 * 7 6 5 29 29 H 1.08996 * 109.68135 * 187.97310 * 8 7 6 30 30 H 1.09002 * 109.67841 * 67.41989 * 8 7 6 31 31 H 0.96998 * 119.99667 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.7050 1.9508 -0.9042 5 6 1.5105 2.1805 1.2400 6 8 2.1370 3.4627 1.3257 7 6 3.5550 3.4107 1.4998 8 6 4.1891 2.7347 0.2787 9 7 3.5104 1.4483 0.0559 10 6 4.2150 0.3097 -0.0981 11 8 3.6425 -0.7270 -0.3776 12 6 5.6690 0.3202 0.0710 13 1 6.1873 1.2542 0.2298 14 6 6.3885 -0.8803 0.0208 15 7 5.7612 -2.0104 -0.1714 16 14 8.2448 -0.8660 0.2289 17 1 8.7094 0.5299 0.4314 18 1 8.6170 -1.6880 1.4082 19 1 8.8836 -1.4283 -0.9881 20 1 -0.3633 0.4332 0.9319 21 1 -0.3634 0.5904 -0.8411 22 1 -0.3634 -1.0237 -0.0908 23 1 1.8932 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 1.7389 1.6030 2.1358 26 1 0.4314 2.3077 1.1533 27 1 3.7909 2.8377 2.3966 28 1 3.9476 4.4225 1.6006 29 1 5.2495 2.5633 0.4634 30 1 4.0667 3.3710 -0.5978 31 1 6.2596 -2.8419 -0.2057 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036326867.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:33 Heat of formation + Delta-G solvation = -93.960473 kcal Electronic energy + Delta-G solvation = -15081.571011 eV Core-core repulsion = 12555.631896 eV Total energy + Delta-G solvation = -2525.939114 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.93351 -38.55016 -35.78121 -34.76214 -34.45884 -30.60788 -28.93801 -27.50940 -25.55715 -23.21329 -22.51969 -20.73279 -18.52948 -17.70929 -17.27180 -16.70667 -16.23242 -15.93035 -15.61892 -15.50928 -14.59200 -14.34638 -13.91686 -13.60984 -13.36829 -13.03556 -12.82655 -12.63313 -12.58765 -12.12691 -11.98639 -11.74737 -11.62676 -11.50371 -11.04267 -10.90797 -9.26158 -8.98643 -8.22958 -6.83663 1.38283 1.39235 1.55974 2.21450 2.46520 2.65542 2.95510 3.59815 3.86300 4.03996 4.14023 4.23048 4.29463 4.47394 4.50830 4.63577 4.66621 4.81627 4.85832 4.92107 5.03885 5.24464 5.37412 5.41141 5.64291 5.73149 6.11092 6.18401 6.38362 6.88525 7.41143 8.48523 8.67754 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.035586 B = 0.011045 C = 0.008749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.639820 B = 2534.491023 C = 3199.683930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.098 4.098 3 C 0.116 3.884 4 H 0.060 0.940 5 C 0.062 3.938 6 O -0.392 6.392 7 C 0.051 3.949 8 C 0.081 3.919 9 N -0.651 5.651 10 C 0.541 3.459 11 O -0.607 6.607 12 C -0.572 4.572 13 H 0.091 0.909 14 C 0.032 3.968 15 N -0.820 5.820 16 Si 0.992 3.008 17 H -0.245 1.245 18 H -0.270 1.270 19 H -0.271 1.271 20 H 0.068 0.932 21 H 0.065 0.935 22 H 0.053 0.947 23 H 0.058 0.942 24 H 0.028 0.972 25 H 0.041 0.959 26 H 0.126 0.874 27 H 0.045 0.955 28 H 0.133 0.867 29 H 0.096 0.904 30 H 0.062 0.938 31 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.376 9.174 3.125 10.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.136 4.136 3 C 0.012 3.988 4 H 0.078 0.922 5 C -0.016 4.016 6 O -0.310 6.310 7 C -0.026 4.026 8 C -0.042 4.042 9 N -0.389 5.389 10 C 0.347 3.653 11 O -0.493 6.493 12 C -0.608 4.608 13 H 0.109 0.891 14 C -0.183 4.183 15 N -0.450 5.450 16 Si 0.812 3.188 17 H -0.168 1.168 18 H -0.195 1.195 19 H -0.196 1.196 20 H 0.087 0.913 21 H 0.084 0.916 22 H 0.072 0.928 23 H 0.077 0.923 24 H 0.047 0.953 25 H 0.059 0.941 26 H 0.144 0.856 27 H 0.063 0.937 28 H 0.151 0.849 29 H 0.114 0.886 30 H 0.081 0.919 31 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.794 8.611 2.945 9.860 hybrid contribution 0.974 -0.714 -0.081 1.210 sum -2.821 7.897 2.864 8.861 Atomic orbital electron populations 1.21921 0.94204 1.01976 1.02444 1.21642 0.95265 0.94348 1.02295 1.21873 0.81629 0.97088 0.98165 0.92190 1.23150 0.98636 0.84039 0.95736 1.87839 1.20882 1.28451 1.93860 1.23100 0.80656 1.02733 0.96101 1.22320 0.98930 0.84650 0.98308 1.48266 1.05044 1.08108 1.77525 1.18599 0.88686 0.81426 0.76597 1.90556 1.71335 1.33243 1.54215 1.21550 0.91059 0.95163 1.53015 0.89133 1.26910 1.05823 0.94179 0.91436 1.70177 1.39149 0.99369 1.36321 0.85050 0.75343 0.80034 0.78394 1.16818 1.19463 1.19635 0.91332 0.91618 0.92754 0.92315 0.95349 0.94110 0.85644 0.93658 0.84894 0.88632 0.91930 0.91711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.53 9.40 71.98 0.68 -3.85 16 2 C -0.10 -4.20 3.93 30.59 0.12 -4.08 16 3 C 0.12 4.68 3.24 45.11 0.15 4.82 16 4 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 5 C 0.06 2.03 5.68 72.22 0.41 2.44 16 6 O -0.39 -12.69 10.74 -148.98 -1.60 -14.29 16 7 C 0.05 1.55 6.98 72.08 0.50 2.06 16 8 C 0.08 2.99 6.55 86.36 0.57 3.56 16 9 N -0.65 -30.26 3.01 -797.79 -2.40 -32.66 16 10 C 0.54 31.13 7.45 86.36 0.64 31.77 16 11 O -0.61 -39.10 10.78 -4.30 -0.05 -39.15 16 12 C -0.57 -31.89 8.88 24.83 0.22 -31.67 16 13 H 0.09 4.52 5.69 -2.91 -0.02 4.50 16 14 C 0.03 1.74 5.50 85.30 0.47 2.21 16 15 N -0.82 -49.64 11.84 21.84 0.26 -49.39 16 16 Si 0.99 40.51 29.56 68.60 2.03 42.54 16 17 H -0.25 -9.18 7.11 99.48 0.71 -8.47 16 18 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 19 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 20 H 0.07 1.76 6.91 -2.38 -0.02 1.74 16 21 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 22 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 23 H 0.06 3.05 6.12 -2.39 -0.01 3.04 16 24 H 0.03 1.39 7.42 -2.39 -0.02 1.37 16 25 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.13 3.26 7.03 -2.39 -0.02 3.24 16 27 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.13 2.96 8.14 -2.39 -0.02 2.94 16 29 H 0.10 3.58 5.40 -2.39 -0.01 3.57 16 30 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.27 15.00 8.29 -92.71 -0.77 14.23 16 Total: -1.00 -72.06 248.73 3.11 -68.95 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: 1.12 Total: 16.74 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: 3.76 Total: 7.26 kcal Atomic # 7 Polarization: -79.90 SS G_CDS: -2.15 Total: -82.05 kcal Atomic # 8 Polarization: -51.79 SS G_CDS: -1.65 Total: -53.44 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.54 kcal Total: -72.06 3.11 -68.95 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036326867.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.014 kcal (2) G-P(sol) polarization free energy of solvation -72.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds