Wall clock time and date at job start Sun Mar 29 2020 21:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46888 * 109.47458 * 2 1 4 4 C 1.46900 * 111.00127 * 288.58469 * 3 2 1 5 5 C 1.50702 * 109.47435 * 160.50608 * 4 3 2 6 6 H 1.07993 * 120.00004 * 3.99568 * 5 4 3 7 7 C 1.37875 * 119.99939 * 184.00149 * 5 4 3 8 8 N 1.31514 * 120.00406 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00064 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47018 * 59.99872 * 9 7 5 11 11 H 1.48498 * 109.47539 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47145 * 299.99905 * 9 7 5 13 13 C 1.46893 * 111.00347 * 164.62630 * 3 2 1 14 14 C 1.53122 * 109.52342 * 298.95479 * 13 3 2 15 15 C 1.53036 * 109.27886 * 177.55842 * 14 13 3 16 16 N 1.46849 * 109.52556 * 300.82145 * 15 14 13 17 17 C 1.46846 * 111.19809 * 61.73920 * 16 15 14 18 18 C 1.53036 * 109.52597 * 298.26135 * 17 16 15 19 19 H 1.09003 * 109.46706 * 61.52509 * 1 2 3 20 20 H 1.09000 * 109.47412 * 181.51850 * 1 2 3 21 21 H 1.08993 * 109.47219 * 301.52734 * 1 2 3 22 22 H 1.09000 * 109.46854 * 239.99608 * 2 1 3 23 23 H 1.08998 * 109.46813 * 120.00147 * 2 1 3 24 24 H 1.09003 * 109.46938 * 280.50628 * 4 3 2 25 25 H 1.08999 * 109.47450 * 40.50290 * 4 3 2 26 26 H 0.96996 * 120.00544 * 179.97438 * 8 7 5 27 27 H 1.09000 * 109.57991 * 178.79667 * 13 3 2 28 28 H 1.09002 * 109.50278 * 57.61642 * 14 13 3 29 29 H 1.09002 * 109.49985 * 297.49780 * 14 13 3 30 30 H 1.08995 * 109.46129 * 180.80643 * 15 14 13 31 31 H 1.09001 * 109.46649 * 60.83391 * 15 14 13 32 32 H 1.00901 * 111.00234 * 185.84414 * 16 15 14 33 33 H 1.09002 * 109.46300 * 58.27605 * 17 16 15 34 34 H 1.09003 * 109.46075 * 178.24516 * 17 16 15 35 35 H 1.08997 * 109.50315 * 299.24129 * 18 17 16 36 36 H 1.09001 * 109.50395 * 179.11808 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3848 0.0000 4 6 1.7832 2.0269 -1.2999 5 6 1.8397 3.5242 -1.1384 6 1 2.0956 3.9548 -0.1817 7 6 1.5644 4.3442 -2.2120 8 7 1.2531 3.8199 -3.3773 9 14 1.6338 6.2002 -2.0117 10 1 3.0010 6.6022 -1.5944 11 1 1.3000 6.8505 -3.3043 12 1 0.6559 6.6233 -0.9772 13 6 3.4419 1.4404 0.3636 14 6 3.6319 0.8759 1.7742 15 6 5.1218 0.8800 2.1236 16 7 5.8570 0.0652 1.1479 17 6 5.7281 0.6152 -0.2076 18 6 4.2563 0.6032 -0.6266 19 1 -0.3633 0.4900 -0.9034 20 1 -0.3634 -1.0273 0.0272 21 1 -0.3633 0.5373 0.8759 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 2.5492 1.7086 -2.0071 25 1 0.8009 1.7387 -1.6742 26 1 1.0591 4.3968 -4.1325 27 1 3.7859 2.4743 0.3356 28 1 3.2520 -0.1451 1.8118 29 1 3.0886 1.4936 2.4895 30 1 5.2618 0.4654 3.1219 31 1 5.4978 1.9028 2.0993 32 1 6.8269 -0.0259 1.4105 33 1 6.1012 1.6392 -0.2210 34 1 6.3085 0.0082 -0.9025 35 1 3.8863 -0.4221 -0.6268 36 1 4.1592 1.0259 -1.6266 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037469580.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:31 Heat of formation + Delta-G solvation = -2.054978 kcal Electronic energy + Delta-G solvation = -15041.584205 eV Core-core repulsion = 12753.182169 eV Total energy + Delta-G solvation = -2288.402036 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.93153 -35.86485 -32.60956 -31.05286 -30.52123 -28.96895 -26.19750 -23.19295 -22.58534 -22.30465 -20.39815 -18.30699 -16.57190 -16.19194 -14.88864 -14.65927 -14.42282 -13.87832 -13.64165 -13.53295 -12.99478 -12.58693 -12.16310 -11.90244 -11.60519 -11.19354 -11.10686 -10.98154 -10.79826 -10.67761 -10.50910 -10.18068 -10.00494 -9.90233 -9.37539 -9.14973 -8.36459 -8.29896 -7.08116 -5.97653 -3.97978 3.34974 3.39028 3.42162 4.41002 4.45858 4.91657 5.23542 5.35028 5.37474 5.49222 5.56981 5.71143 5.80837 5.88986 6.02438 6.03826 6.10175 6.13802 6.27346 6.38682 6.44548 6.51758 6.65973 6.69876 6.88869 6.95217 7.21286 7.34723 7.47861 7.53181 7.88119 8.20976 8.33094 8.63799 9.09333 9.65346 11.12791 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.027975 B = 0.009832 C = 0.008376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.644908 B = 2847.140464 C = 3341.891789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.047 3.953 3 N -0.530 5.530 4 C 0.187 3.813 5 C -0.501 4.501 6 H 0.060 0.940 7 C 0.054 3.946 8 N -0.901 5.901 9 Si 0.895 3.105 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.277 1.277 13 C 0.094 3.906 14 C -0.112 4.112 15 C 0.060 3.940 16 N -0.691 5.691 17 C 0.063 3.937 18 C -0.150 4.150 19 H 0.059 0.941 20 H 0.043 0.957 21 H 0.056 0.944 22 H 0.021 0.979 23 H 0.062 0.938 24 H -0.005 1.005 25 H 0.034 0.966 26 H 0.260 0.740 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.028 0.972 32 H 0.335 0.665 33 H 0.029 0.971 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.207 -6.695 7.656 11.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.081 4.081 3 N -0.253 5.253 4 C 0.062 3.938 5 C -0.540 4.540 6 H 0.078 0.922 7 C -0.147 4.147 8 N -0.541 5.541 9 Si 0.723 3.277 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.202 1.202 13 C -0.015 4.015 14 C -0.150 4.150 15 C -0.070 4.070 16 N -0.322 5.322 17 C -0.066 4.066 18 C -0.189 4.189 19 H 0.078 0.922 20 H 0.062 0.938 21 H 0.075 0.925 22 H 0.040 0.960 23 H 0.080 0.920 24 H 0.012 0.988 25 H 0.052 0.948 26 H 0.070 0.930 27 H 0.100 0.900 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.047 0.953 32 H 0.152 0.848 33 H 0.048 0.952 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.339 -6.815 7.731 11.607 hybrid contribution 1.063 1.399 -0.662 1.877 sum 6.402 -5.416 7.070 10.968 Atomic orbital electron populations 1.21757 0.95858 0.99744 1.02769 1.22047 0.95505 0.91361 0.99211 1.62350 1.14396 1.13917 1.34625 1.19824 0.96412 0.94002 0.83534 1.21138 1.45845 0.90848 0.96123 0.92208 1.24971 0.95672 0.98762 0.95266 1.69943 1.47937 1.35174 1.01004 0.86610 0.78439 0.85504 0.77125 1.20428 1.21425 1.20226 1.21576 0.88450 0.99028 0.92437 1.21727 0.94124 1.01542 0.97600 1.21915 0.95127 0.94975 0.94981 1.60325 1.16326 1.53050 1.02544 1.21864 0.97841 0.97275 0.89666 1.22282 0.94349 1.01131 1.01134 0.92244 0.93814 0.92471 0.96049 0.91961 0.98756 0.94821 0.92991 0.90036 0.91467 0.91273 0.91327 0.95339 0.84842 0.95245 0.91532 0.91856 0.90752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.95 37.16 0.37 -2.18 16 2 C 0.05 0.88 4.60 -3.83 -0.02 0.87 16 3 N -0.53 -11.49 4.37 -227.94 -1.00 -12.49 16 4 C 0.19 4.87 4.47 -4.98 -0.02 4.85 16 5 C -0.50 -14.17 8.66 -34.44 -0.30 -14.47 16 6 H 0.06 1.69 7.63 -52.49 -0.40 1.29 16 7 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.91 13.29 55.43 0.74 -26.18 16 9 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 C 0.09 1.83 2.20 -67.59 -0.15 1.68 16 14 C -0.11 -1.79 5.28 -26.65 -0.14 -1.93 16 15 C 0.06 0.81 6.55 -3.83 -0.03 0.79 16 16 N -0.69 -9.34 6.85 -113.82 -0.78 -10.12 16 17 C 0.06 0.95 6.55 -3.83 -0.03 0.92 16 18 C -0.15 -2.70 4.75 -26.65 -0.13 -2.82 16 19 H 0.06 1.17 6.55 -51.93 -0.34 0.83 16 20 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 21 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 22 H 0.02 0.41 7.07 -51.93 -0.37 0.05 16 23 H 0.06 1.06 5.65 -51.93 -0.29 0.77 16 24 H -0.01 -0.14 5.95 -51.93 -0.31 -0.45 16 25 H 0.03 0.94 6.23 -51.93 -0.32 0.62 16 26 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 27 H 0.08 1.77 7.39 -51.93 -0.38 1.39 16 28 H 0.07 1.07 6.03 -51.93 -0.31 0.76 16 29 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.33 3.68 8.90 -39.29 -0.35 3.33 16 33 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 1.14 6.62 -51.93 -0.34 0.80 16 36 H 0.07 1.52 6.38 -51.93 -0.33 1.19 16 LS Contribution 273.55 15.07 4.12 4.12 Total: -1.00 -29.52 273.55 -8.32 -37.84 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -5.85 Total: 0.80 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -0.53 Total: -10.85 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: -1.04 Total: -48.79 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.52 -8.32 -37.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037469580.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.781 kcal (2) G-P(sol) polarization free energy of solvation -29.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds