Wall clock time and date at job start Sun Mar 29 2020 21:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46888 * 109.47458 * 2 1 4 4 C 1.46900 * 111.00127 * 288.58469 * 3 2 1 5 5 C 1.50702 * 109.47435 * 160.50608 * 4 3 2 6 6 H 1.07993 * 120.00004 * 3.99568 * 5 4 3 7 7 C 1.37875 * 119.99939 * 184.00149 * 5 4 3 8 8 N 1.31514 * 120.00406 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00064 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47018 * 59.99872 * 9 7 5 11 11 H 1.48498 * 109.47539 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47145 * 299.99905 * 9 7 5 13 13 C 1.46893 * 111.00347 * 164.62630 * 3 2 1 14 14 C 1.53122 * 109.52342 * 298.95479 * 13 3 2 15 15 C 1.53036 * 109.27886 * 177.55842 * 14 13 3 16 16 N 1.46849 * 109.52556 * 300.82145 * 15 14 13 17 17 C 1.46846 * 111.19809 * 61.73920 * 16 15 14 18 18 C 1.53036 * 109.52597 * 298.26135 * 17 16 15 19 19 H 1.09003 * 109.46706 * 61.52509 * 1 2 3 20 20 H 1.09000 * 109.47412 * 181.51850 * 1 2 3 21 21 H 1.08993 * 109.47219 * 301.52734 * 1 2 3 22 22 H 1.09000 * 109.46854 * 239.99608 * 2 1 3 23 23 H 1.08998 * 109.46813 * 120.00147 * 2 1 3 24 24 H 1.09003 * 109.46938 * 280.50628 * 4 3 2 25 25 H 1.08999 * 109.47450 * 40.50290 * 4 3 2 26 26 H 0.96996 * 120.00544 * 179.97438 * 8 7 5 27 27 H 1.09000 * 109.57991 * 178.79667 * 13 3 2 28 28 H 1.09002 * 109.50278 * 57.61642 * 14 13 3 29 29 H 1.09002 * 109.49985 * 297.49780 * 14 13 3 30 30 H 1.08995 * 109.46129 * 180.80643 * 15 14 13 31 31 H 1.09001 * 109.46649 * 60.83391 * 15 14 13 32 32 H 1.00901 * 111.00234 * 185.84414 * 16 15 14 33 33 H 1.09002 * 109.46300 * 58.27605 * 17 16 15 34 34 H 1.09003 * 109.46075 * 178.24516 * 17 16 15 35 35 H 1.08997 * 109.50315 * 299.24129 * 18 17 16 36 36 H 1.09001 * 109.50395 * 179.11808 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3848 0.0000 4 6 1.7832 2.0269 -1.2999 5 6 1.8397 3.5242 -1.1384 6 1 2.0956 3.9548 -0.1817 7 6 1.5644 4.3442 -2.2120 8 7 1.2531 3.8199 -3.3773 9 14 1.6338 6.2002 -2.0117 10 1 3.0010 6.6022 -1.5944 11 1 1.3000 6.8505 -3.3043 12 1 0.6559 6.6233 -0.9772 13 6 3.4419 1.4404 0.3636 14 6 3.6319 0.8759 1.7742 15 6 5.1218 0.8800 2.1236 16 7 5.8570 0.0652 1.1479 17 6 5.7281 0.6152 -0.2076 18 6 4.2563 0.6032 -0.6266 19 1 -0.3633 0.4900 -0.9034 20 1 -0.3634 -1.0273 0.0272 21 1 -0.3633 0.5373 0.8759 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 2.5492 1.7086 -2.0071 25 1 0.8009 1.7387 -1.6742 26 1 1.0591 4.3968 -4.1325 27 1 3.7859 2.4743 0.3356 28 1 3.2520 -0.1451 1.8118 29 1 3.0886 1.4936 2.4895 30 1 5.2618 0.4654 3.1219 31 1 5.4978 1.9028 2.0993 32 1 6.8269 -0.0259 1.4105 33 1 6.1012 1.6392 -0.2210 34 1 6.3085 0.0082 -0.9025 35 1 3.8863 -0.4221 -0.6268 36 1 4.1592 1.0259 -1.6266 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037469580.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:31 Heat of formation + Delta-G solvation = -23.603485 kcal Electronic energy + Delta-G solvation = -15042.518618 eV Core-core repulsion = 12753.182169 eV Total energy + Delta-G solvation = -2289.336450 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.40293 -37.33580 -34.75754 -32.47021 -31.82103 -30.73216 -28.07520 -24.94771 -24.05895 -23.75134 -21.92721 -19.84034 -18.45541 -17.71122 -16.78197 -16.25603 -15.77219 -15.56301 -15.23442 -14.84515 -14.38904 -14.25353 -14.01455 -13.34557 -13.09564 -12.96517 -12.68313 -12.63158 -12.51900 -12.34792 -12.05651 -11.94796 -11.64216 -11.39015 -11.23869 -10.95498 -10.56713 -9.41045 -8.85873 -8.17933 -6.27312 1.38302 1.41423 1.49328 2.39839 3.12195 3.30113 3.34214 3.92087 4.00787 4.17308 4.23171 4.31006 4.47639 4.54674 4.60389 4.70724 4.74584 4.81219 4.88303 4.94490 5.01746 5.08124 5.18527 5.21994 5.30055 5.39775 5.44270 5.48086 5.69052 6.04776 6.12861 6.48820 6.56707 6.73023 6.88312 7.41340 8.91915 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.027975 B = 0.009832 C = 0.008376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.644908 B = 2847.140464 C = 3341.891789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.047 3.953 3 N -0.539 5.539 4 C 0.204 3.796 5 C -0.517 4.517 6 H 0.055 0.945 7 C 0.001 3.999 8 N -0.935 5.935 9 Si 0.964 3.036 10 H -0.269 1.269 11 H -0.282 1.282 12 H -0.269 1.269 13 C 0.092 3.908 14 C -0.103 4.103 15 C 0.063 3.937 16 N -0.689 5.689 17 C 0.070 3.930 18 C -0.142 4.142 19 H 0.028 0.972 20 H 0.078 0.922 21 H 0.057 0.943 22 H 0.013 0.987 23 H 0.089 0.911 24 H -0.031 1.031 25 H 0.007 0.993 26 H 0.263 0.737 27 H 0.050 0.950 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.099 0.901 31 H 0.026 0.974 32 H 0.355 0.645 33 H 0.023 0.977 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.150 -7.028 9.457 13.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.080 4.080 3 N -0.262 5.262 4 C 0.078 3.922 5 C -0.556 4.556 6 H 0.074 0.926 7 C -0.196 4.196 8 N -0.576 5.576 9 Si 0.789 3.211 10 H -0.194 1.194 11 H -0.208 1.208 12 H -0.194 1.194 13 C -0.017 4.017 14 C -0.141 4.141 15 C -0.067 4.067 16 N -0.321 5.321 17 C -0.060 4.060 18 C -0.182 4.182 19 H 0.048 0.952 20 H 0.096 0.904 21 H 0.076 0.924 22 H 0.032 0.968 23 H 0.107 0.893 24 H -0.013 1.013 25 H 0.025 0.975 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.117 0.883 31 H 0.044 0.956 32 H 0.174 0.826 33 H 0.041 0.959 34 H 0.102 0.898 35 H 0.083 0.917 36 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 6.304 -7.165 9.557 13.506 hybrid contribution 0.765 1.442 -1.214 2.034 sum 7.069 -5.723 8.343 12.342 Atomic orbital electron populations 1.21721 0.95057 1.01594 1.01206 1.22149 0.96196 0.89683 1.00004 1.62287 1.16420 1.15754 1.31702 1.19435 0.93997 0.93561 0.85190 1.21428 1.45894 0.92204 0.96050 0.92646 1.25864 0.95079 1.03889 0.94815 1.70073 1.48667 1.37022 1.01806 0.85513 0.78882 0.79304 0.77382 1.19446 1.20761 1.19410 1.21607 0.87092 0.97870 0.95131 1.21660 0.96347 1.01337 0.94798 1.21921 0.93125 0.95301 0.96330 1.60259 1.17883 1.52482 1.01516 1.21741 0.95472 0.97547 0.91249 1.22138 0.96701 1.00375 0.98960 0.95245 0.90361 0.92379 0.96845 0.89293 1.01308 0.97524 0.92810 0.93157 0.90876 0.91214 0.88258 0.95583 0.82598 0.95870 0.89781 0.91682 0.94283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.83 9.95 71.98 0.72 -4.12 16 2 C 0.05 1.76 4.60 86.31 0.40 2.16 16 3 N -0.54 -23.83 4.37 -875.08 -3.83 -27.65 16 4 C 0.20 11.14 4.47 85.56 0.38 11.52 16 5 C -0.52 -30.17 8.66 25.60 0.22 -29.95 16 6 H 0.06 3.21 7.63 -2.91 -0.02 3.18 16 7 C 0.00 0.07 5.46 84.65 0.46 0.53 16 8 N -0.93 -57.39 13.29 21.45 0.28 -57.10 16 9 Si 0.96 45.33 29.54 68.60 2.03 47.36 16 10 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 12 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 13 C 0.09 3.58 2.20 45.00 0.10 3.68 16 14 C -0.10 -3.11 5.28 30.65 0.16 -2.95 16 15 C 0.06 1.52 6.55 86.32 0.57 2.09 16 16 N -0.69 -16.54 6.85 -514.00 -3.52 -20.06 16 17 C 0.07 2.01 6.55 86.33 0.57 2.57 16 18 C -0.14 -5.18 4.75 30.65 0.15 -5.03 16 19 H 0.03 1.18 6.55 -2.39 -0.02 1.17 16 20 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 21 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 22 H 0.01 0.52 7.07 -2.39 -0.02 0.50 16 23 H 0.09 2.84 5.65 -2.39 -0.01 2.82 16 24 H -0.03 -1.79 5.95 -2.39 -0.01 -1.81 16 25 H 0.01 0.40 6.23 -2.39 -0.01 0.38 16 26 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 27 H 0.05 2.25 7.39 -2.39 -0.02 2.23 16 28 H 0.07 2.12 6.03 -2.39 -0.01 2.11 16 29 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.35 6.49 8.90 -89.69 -0.80 5.69 16 33 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.06 2.32 6.62 -2.39 -0.02 2.30 16 36 H 0.04 1.67 6.38 -2.39 -0.02 1.66 16 Total: -1.00 -64.95 273.55 -1.06 -66.01 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: 0.26 Total: 10.94 kcal Atomic # 6 Polarization: -23.22 SS G_CDS: 3.72 Total: -19.50 kcal Atomic # 7 Polarization: -97.75 SS G_CDS: -7.06 Total: -104.81 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -64.95 -1.06 -66.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037469580.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.409 kcal (2) G-P(sol) polarization free energy of solvation -64.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds