Wall clock time and date at job start Sun Mar 29 2020 22:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86795 * 120.00172 * 2 1 4 4 H 1.48501 * 109.47414 * 270.00073 * 3 2 1 5 5 H 1.48497 * 109.47131 * 29.99883 * 3 2 1 6 6 H 1.48500 * 109.47308 * 150.00190 * 3 2 1 7 7 C 1.38819 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99503 * 206.64270 * 7 2 1 9 9 N 1.36930 * 120.00038 * 26.64834 * 7 2 1 10 10 C 1.46502 * 120.00074 * 7.56478 * 9 7 2 11 11 C 1.50700 * 109.47008 * 270.00104 * 10 9 7 12 12 O 1.20828 * 120.00159 * 0.02562 * 11 10 9 13 13 O 1.34233 * 120.00152 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99962 * 187.56464 * 9 7 2 15 15 C 1.54263 * 110.03225 * 297.07248 * 14 9 7 16 16 C 1.54966 * 104.15702 * 95.75311 * 15 14 9 17 17 C 1.54888 * 102.77995 * 37.88978 * 16 15 14 18 18 C 1.53882 * 110.02952 * 54.29182 * 14 9 7 19 19 H 0.97002 * 120.00220 * 354.72636 * 1 2 3 20 20 H 1.08996 * 109.47488 * 29.99781 * 10 9 7 21 21 H 1.09001 * 109.46943 * 150.00478 * 10 9 7 22 22 H 0.96704 * 116.99925 * 180.02562 * 13 11 10 23 23 H 1.09007 * 110.01410 * 175.68253 * 14 9 7 24 24 H 1.08997 * 110.48853 * 214.39799 * 15 14 9 25 25 H 1.09003 * 110.48811 * 337.04876 * 15 14 9 26 26 H 1.09000 * 110.72457 * 279.57285 * 16 15 14 27 27 H 1.09007 * 110.92393 * 156.29457 * 16 15 14 28 28 H 1.08992 * 110.48888 * 203.40591 * 17 16 15 29 29 H 1.08997 * 110.60236 * 80.81058 * 17 16 15 30 30 H 1.08996 * 110.03112 * 359.95323 * 18 14 9 31 31 H 1.09000 * 110.02937 * 121.38507 * 18 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0042 -1.2520 0.4189 9 7 1.4346 -2.3248 -0.5329 10 6 0.1602 -2.2255 -1.2487 11 6 -0.9772 -2.4093 -0.2773 12 8 -0.7470 -2.6029 0.8929 13 8 -2.2461 -2.3579 -0.7121 14 6 2.0932 -3.6253 -0.3867 15 6 3.4583 -3.6101 -1.1050 16 6 4.4733 -3.2756 0.0172 17 6 3.9098 -4.0537 1.2321 18 6 2.3799 -3.9069 1.0988 19 1 -0.4850 0.8365 0.0772 20 1 0.0824 -1.2447 -1.7178 21 1 0.1125 -2.9995 -2.0147 22 1 -2.9418 -2.4811 -0.0518 23 1 1.4621 -4.4118 -0.8008 24 1 3.6740 -4.5881 -1.5351 25 1 3.4746 -2.8408 -1.8770 26 1 4.4876 -2.2043 0.2175 27 1 5.4706 -3.6321 -0.2410 28 1 4.2559 -3.6080 2.1645 29 1 4.1979 -5.1037 1.1822 30 1 2.0298 -3.0756 1.7106 31 1 1.8880 -4.8299 1.4055 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037474446.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:13 Heat of formation + Delta-G solvation = -73.422182 kcal Electronic energy + Delta-G solvation = -15242.908654 eV Core-core repulsion = 12717.860147 eV Total energy + Delta-G solvation = -2525.048507 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.72030 -37.62862 -34.74194 -33.84292 -30.96393 -27.85526 -27.63084 -26.48528 -22.92148 -20.38269 -19.77936 -19.07099 -16.66377 -16.37243 -15.60089 -14.98501 -14.64184 -14.16029 -14.00683 -13.17135 -12.93190 -12.66118 -11.76123 -11.32358 -11.19346 -10.83746 -10.71753 -10.46671 -10.39407 -10.29099 -10.26842 -10.03081 -9.92361 -9.67855 -9.48148 -9.05919 -8.46060 -7.01628 -5.87936 -3.10868 3.37955 3.45598 3.46777 4.00037 4.38569 4.62874 5.24274 5.28003 5.42257 5.54282 5.71419 6.11369 6.26202 6.31029 6.36851 6.41791 6.52640 6.60143 6.63810 6.79381 6.89034 6.99498 7.06698 7.20155 7.37336 7.85343 7.95813 8.25003 9.10111 9.53179 9.80738 10.21574 11.24042 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.021579 B = 0.017169 C = 0.010975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.254248 B = 1630.452314 C = 2550.582498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.005 4.005 3 Si 0.905 3.095 4 H -0.288 1.288 5 H -0.295 1.295 6 H -0.281 1.281 7 C -0.242 4.242 8 H 0.089 0.911 9 N -0.563 5.563 10 C 0.187 3.813 11 C 0.477 3.523 12 O -0.518 6.518 13 O -0.546 6.546 14 C 0.170 3.830 15 C -0.131 4.131 16 C -0.121 4.121 17 C -0.121 4.121 18 C -0.132 4.132 19 H 0.257 0.743 20 H 0.114 0.886 21 H 0.050 0.950 22 H 0.377 0.623 23 H 0.051 0.949 24 H 0.050 0.950 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.047 0.953 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.084 0.916 31 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.792 -6.039 -2.631 7.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.202 4.202 3 Si 0.736 3.264 4 H -0.215 1.215 5 H -0.221 1.221 6 H -0.206 1.206 7 C -0.370 4.370 8 H 0.107 0.893 9 N -0.282 5.282 10 C 0.058 3.942 11 C 0.317 3.683 12 O -0.404 6.404 13 O -0.356 6.356 14 C 0.062 3.938 15 C -0.170 4.170 16 C -0.158 4.158 17 C -0.159 4.159 18 C -0.171 4.171 19 H 0.067 0.933 20 H 0.131 0.869 21 H 0.068 0.932 22 H 0.233 0.767 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.090 0.910 26 H 0.093 0.907 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.103 0.897 31 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.098 -5.888 -2.651 7.162 hybrid contribution -0.263 0.933 0.856 1.293 sum 2.835 -4.955 -1.795 5.984 Atomic orbital electron populations 1.69775 1.05288 1.25915 1.54470 1.24763 0.95195 0.98319 1.01954 0.86203 0.79091 0.83458 0.77631 1.21478 1.22148 1.20614 1.19357 0.98464 0.84834 1.34387 0.89336 1.44393 1.18305 1.03335 1.62205 1.20487 0.81194 1.02312 0.90240 1.25443 0.82048 0.69827 0.90970 1.90492 1.84333 1.45893 1.19661 1.84655 1.18451 1.86332 1.46170 1.21018 0.92396 0.87005 0.93336 1.22788 0.96358 0.99781 0.98091 1.22521 0.96928 1.00929 0.95462 1.22296 0.96907 0.98678 0.97993 1.22602 0.94058 1.01254 0.99205 0.93259 0.86859 0.93205 0.76724 0.93098 0.93168 0.91028 0.90740 0.93384 0.92859 0.93115 0.89725 0.93806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.67 9.06 55.49 0.50 -25.17 16 2 C -0.01 -0.15 4.86 -17.43 -0.08 -0.23 16 3 Si 0.91 21.57 29.63 -169.99 -5.04 16.53 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.24 -6.30 8.08 -15.06 -0.12 -6.42 16 8 H 0.09 2.27 5.37 -52.48 -0.28 1.99 16 9 N -0.56 -13.45 1.92 -165.74 -0.32 -13.76 16 10 C 0.19 4.38 5.51 -5.19 -0.03 4.35 16 11 C 0.48 11.66 6.43 36.01 0.23 11.89 16 12 O -0.52 -14.33 16.94 -18.75 -0.32 -14.65 16 13 O -0.55 -11.41 13.42 -39.27 -0.53 -11.94 16 14 C 0.17 3.46 3.47 -66.81 -0.23 3.23 16 15 C -0.13 -2.31 6.18 -25.03 -0.15 -2.46 16 16 C -0.12 -2.06 6.45 -24.70 -0.16 -2.22 16 17 C -0.12 -2.05 6.83 -25.07 -0.17 -2.22 16 18 C -0.13 -2.66 6.20 -25.61 -0.16 -2.82 16 19 H 0.26 7.20 8.32 -40.82 -0.34 6.86 16 20 H 0.11 2.86 6.29 -51.93 -0.33 2.54 16 21 H 0.05 1.00 7.97 -51.93 -0.41 0.59 16 22 H 0.38 6.36 9.10 45.56 0.41 6.78 16 23 H 0.05 0.99 7.87 -51.93 -0.41 0.58 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.07 1.34 8.04 -51.93 -0.42 0.92 16 26 H 0.07 1.41 6.11 -51.93 -0.32 1.09 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.08 2.05 7.15 -51.93 -0.37 1.68 16 31 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 253.22 15.07 3.82 3.82 Total: -1.00 -30.48 253.22 -6.13 -36.61 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -3.37 Total: 5.45 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -0.88 Total: 3.11 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.18 Total: -38.93 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: -0.84 Total: -26.58 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.04 Total: 16.53 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -30.48 -6.13 -36.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037474446.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.814 kcal (2) G-P(sol) polarization free energy of solvation -30.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds