Wall clock time and date at job start Sun Mar 29 2020 22:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86795 * 120.00172 * 2 1 4 4 H 1.48501 * 109.47414 * 270.00073 * 3 2 1 5 5 H 1.48497 * 109.47131 * 29.99883 * 3 2 1 6 6 H 1.48500 * 109.47308 * 150.00190 * 3 2 1 7 7 C 1.38819 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99503 * 206.64270 * 7 2 1 9 9 N 1.36930 * 120.00038 * 26.64834 * 7 2 1 10 10 C 1.46502 * 120.00074 * 7.56478 * 9 7 2 11 11 C 1.50700 * 109.47008 * 270.00104 * 10 9 7 12 12 O 1.20828 * 120.00159 * 0.02562 * 11 10 9 13 13 O 1.34233 * 120.00152 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99962 * 187.56464 * 9 7 2 15 15 C 1.54263 * 110.03225 * 297.07248 * 14 9 7 16 16 C 1.54966 * 104.15702 * 95.75311 * 15 14 9 17 17 C 1.54888 * 102.77995 * 37.88978 * 16 15 14 18 18 C 1.53882 * 110.02952 * 54.29182 * 14 9 7 19 19 H 0.97002 * 120.00220 * 354.72636 * 1 2 3 20 20 H 1.08996 * 109.47488 * 29.99781 * 10 9 7 21 21 H 1.09001 * 109.46943 * 150.00478 * 10 9 7 22 22 H 0.96704 * 116.99925 * 180.02562 * 13 11 10 23 23 H 1.09007 * 110.01410 * 175.68253 * 14 9 7 24 24 H 1.08997 * 110.48853 * 214.39799 * 15 14 9 25 25 H 1.09003 * 110.48811 * 337.04876 * 15 14 9 26 26 H 1.09000 * 110.72457 * 279.57285 * 16 15 14 27 27 H 1.09007 * 110.92393 * 156.29457 * 16 15 14 28 28 H 1.08992 * 110.48888 * 203.40591 * 17 16 15 29 29 H 1.08997 * 110.60236 * 80.81058 * 17 16 15 30 30 H 1.08996 * 110.03112 * 359.95323 * 18 14 9 31 31 H 1.09000 * 110.02937 * 121.38507 * 18 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0042 -1.2520 0.4189 9 7 1.4346 -2.3248 -0.5329 10 6 0.1602 -2.2255 -1.2487 11 6 -0.9772 -2.4093 -0.2773 12 8 -0.7470 -2.6029 0.8929 13 8 -2.2461 -2.3579 -0.7121 14 6 2.0932 -3.6253 -0.3867 15 6 3.4583 -3.6101 -1.1050 16 6 4.4733 -3.2756 0.0172 17 6 3.9098 -4.0537 1.2321 18 6 2.3799 -3.9069 1.0988 19 1 -0.4850 0.8365 0.0772 20 1 0.0824 -1.2447 -1.7178 21 1 0.1125 -2.9995 -2.0147 22 1 -2.9418 -2.4811 -0.0518 23 1 1.4621 -4.4118 -0.8008 24 1 3.6740 -4.5881 -1.5351 25 1 3.4746 -2.8408 -1.8770 26 1 4.4876 -2.2043 0.2175 27 1 5.4706 -3.6321 -0.2410 28 1 4.2559 -3.6080 2.1645 29 1 4.1979 -5.1037 1.1822 30 1 2.0298 -3.0756 1.7106 31 1 1.8880 -4.8299 1.4055 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037474446.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:13 Heat of formation + Delta-G solvation = -92.764685 kcal Electronic energy + Delta-G solvation = -15243.747408 eV Core-core repulsion = 12717.860147 eV Total energy + Delta-G solvation = -2525.887261 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.57731 -39.25169 -36.54278 -35.70318 -32.87054 -29.34724 -29.30723 -28.30856 -24.78342 -22.15999 -21.23769 -20.75516 -18.55933 -18.23480 -17.33629 -16.83846 -16.27342 -15.94250 -15.81361 -14.85022 -14.69410 -14.17384 -13.55916 -13.24592 -12.97141 -12.62301 -12.40387 -12.19988 -12.10894 -11.87640 -11.78625 -11.71108 -11.57435 -11.36189 -11.10849 -10.98778 -10.45549 -8.91561 -7.90629 -5.12741 1.47716 1.50636 1.57435 2.08488 2.51134 2.83188 3.28207 3.56001 3.97133 4.05314 4.29731 4.61600 4.69279 4.77275 4.92660 4.96468 5.03806 5.13118 5.20248 5.26685 5.30092 5.31034 5.49301 5.63140 5.75669 5.88466 6.19562 6.31128 7.11025 7.67284 7.90952 8.25704 9.19877 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.021579 B = 0.017169 C = 0.010975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.254248 B = 1630.452314 C = 2550.582498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.061 4.061 3 Si 0.962 3.038 4 H -0.284 1.284 5 H -0.307 1.307 6 H -0.274 1.274 7 C -0.232 4.232 8 H 0.089 0.911 9 N -0.574 5.574 10 C 0.184 3.816 11 C 0.480 3.520 12 O -0.558 6.558 13 O -0.537 6.537 14 C 0.158 3.842 15 C -0.121 4.121 16 C -0.119 4.119 17 C -0.113 4.113 18 C -0.129 4.129 19 H 0.246 0.754 20 H 0.093 0.907 21 H 0.086 0.914 22 H 0.397 0.603 23 H 0.062 0.938 24 H 0.083 0.917 25 H 0.059 0.941 26 H 0.048 0.952 27 H 0.080 0.920 28 H 0.052 0.948 29 H 0.081 0.919 30 H 0.035 0.965 31 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.136 -7.347 -3.415 9.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.255 4.255 3 Si 0.792 3.208 4 H -0.210 1.210 5 H -0.235 1.235 6 H -0.199 1.199 7 C -0.361 4.361 8 H 0.107 0.893 9 N -0.294 5.294 10 C 0.054 3.946 11 C 0.322 3.678 12 O -0.447 6.447 13 O -0.348 6.348 14 C 0.052 3.948 15 C -0.160 4.160 16 C -0.157 4.157 17 C -0.150 4.150 18 C -0.169 4.169 19 H 0.056 0.944 20 H 0.111 0.889 21 H 0.104 0.896 22 H 0.255 0.745 23 H 0.080 0.920 24 H 0.102 0.898 25 H 0.077 0.923 26 H 0.066 0.934 27 H 0.098 0.902 28 H 0.071 0.929 29 H 0.100 0.900 30 H 0.053 0.947 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.452 -7.221 -3.454 9.159 hybrid contribution -0.736 1.246 1.106 1.821 sum 3.716 -5.975 -2.349 7.418 Atomic orbital electron populations 1.69921 1.06287 1.25465 1.56787 1.25396 0.95893 1.00885 1.03278 0.85309 0.77951 0.80050 0.77464 1.21042 1.23495 1.19894 1.19594 0.98330 0.85677 1.32549 0.89313 1.44599 1.18640 1.04228 1.61917 1.20534 0.80958 1.02396 0.90697 1.25612 0.83083 0.68664 0.90441 1.90477 1.85121 1.47894 1.21208 1.84578 1.18001 1.85640 1.46583 1.21347 0.93913 0.85705 0.93881 1.22702 0.94452 1.01248 0.97622 1.22495 0.98527 0.99442 0.95187 1.22269 0.94107 1.00598 0.98064 1.22501 0.96670 0.99490 0.98203 0.94390 0.88914 0.89636 0.74479 0.92004 0.89823 0.92255 0.93370 0.90164 0.92895 0.90014 0.94654 0.93127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.95 9.06 21.65 0.20 -53.75 16 2 C -0.06 -3.34 4.86 84.86 0.41 -2.92 16 3 Si 0.96 45.00 29.63 68.60 2.03 47.03 16 4 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 5 H -0.31 -14.89 7.11 99.48 0.71 -14.19 16 6 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 7 C -0.23 -12.13 8.08 84.04 0.68 -11.45 16 8 H 0.09 4.57 5.37 -2.91 -0.02 4.55 16 9 N -0.57 -27.19 1.92 -678.28 -1.30 -28.49 16 10 C 0.18 8.50 5.51 85.63 0.47 8.97 16 11 C 0.48 23.39 6.43 71.24 0.46 23.85 16 12 O -0.56 -31.21 16.94 21.96 0.37 -30.84 16 13 O -0.54 -21.94 13.42 -51.45 -0.69 -22.64 16 14 C 0.16 6.16 3.47 45.72 0.16 6.32 16 15 C -0.12 -3.90 6.18 31.69 0.20 -3.71 16 16 C -0.12 -3.71 6.45 31.91 0.21 -3.50 16 17 C -0.11 -3.51 6.83 31.67 0.22 -3.30 16 18 C -0.13 -5.08 6.20 31.32 0.19 -4.88 16 19 H 0.25 14.19 8.32 -92.71 -0.77 13.42 16 20 H 0.09 4.72 6.29 -2.39 -0.02 4.70 16 21 H 0.09 3.27 7.97 -2.39 -0.02 3.26 16 22 H 0.40 12.95 9.10 -74.05 -0.67 12.28 16 23 H 0.06 2.25 7.87 -2.38 -0.02 2.23 16 24 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 25 H 0.06 2.07 8.04 -2.39 -0.02 2.05 16 26 H 0.05 1.75 6.11 -2.39 -0.01 1.73 16 27 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 28 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.03 1.73 7.15 -2.39 -0.02 1.71 16 31 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -65.80 253.22 4.06 -61.75 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 0.46 Total: 17.56 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: 2.99 Total: 9.38 kcal Atomic # 7 Polarization: -81.14 SS G_CDS: -1.11 Total: -82.24 kcal Atomic # 8 Polarization: -53.16 SS G_CDS: -0.32 Total: -53.48 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -65.80 4.06 -61.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037474446.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.019 kcal (2) G-P(sol) polarization free energy of solvation -65.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds