Wall clock time and date at job start Sun Mar 29 2020 22:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47032 * 2 1 4 4 H 1.09007 * 109.51164 * 304.90270 * 3 2 1 5 5 C 1.53293 * 109.51498 * 184.74868 * 3 2 1 6 6 N 1.47161 * 108.41515 * 187.79823 * 5 3 2 7 7 C 1.34784 * 120.98820 * 230.53312 * 6 5 3 8 8 O 1.21684 * 119.99867 * 355.16785 * 7 6 5 9 9 C 1.46376 * 119.99756 * 175.16636 * 7 6 5 10 10 H 1.08001 * 120.00389 * 7.87604 * 9 7 6 11 11 C 1.40047 * 119.99772 * 187.88781 * 9 7 6 12 12 N 1.30669 * 120.00218 * 359.97438 * 11 9 7 13 13 Si 1.86801 * 120.00037 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47018 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47413 * 119.99722 * 13 11 9 16 16 H 1.48502 * 109.47067 * 239.99576 * 13 11 9 17 17 C 1.47146 * 118.03238 * 50.46656 * 6 5 3 18 18 C 1.53297 * 108.41451 * 309.53273 * 17 6 5 19 19 O 1.42961 * 109.51317 * 64.99939 * 3 2 1 20 20 H 1.09003 * 109.47354 * 179.97438 * 1 2 3 21 21 H 1.09005 * 109.47507 * 299.99805 * 1 2 3 22 22 H 1.09002 * 109.47851 * 59.99793 * 1 2 3 23 23 H 1.09001 * 109.46830 * 240.00429 * 2 1 3 24 24 H 1.08994 * 109.47250 * 120.00113 * 2 1 3 25 25 H 1.09002 * 109.67866 * 307.50095 * 5 3 2 26 26 H 1.09000 * 109.67998 * 68.01547 * 5 3 2 27 27 H 0.96999 * 120.00336 * 179.97438 * 12 11 9 28 28 H 1.08994 * 109.68877 * 189.78913 * 17 6 5 29 29 H 1.09005 * 109.68145 * 69.27217 * 17 6 5 30 30 H 1.09000 * 109.51097 * 172.19881 * 18 17 6 31 31 H 1.09001 * 109.51329 * 292.35715 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6070 1.9817 -0.8427 5 6 3.5682 1.4453 -0.1196 6 7 4.0468 2.8238 0.0712 7 6 4.8958 3.3916 -0.8084 8 8 5.3468 2.7357 -1.7288 9 6 5.2752 4.7971 -0.6563 10 1 4.9792 5.3439 0.2268 11 6 6.0219 5.4329 -1.6561 12 7 6.3803 4.7713 -2.7244 13 14 6.5067 7.2264 -1.4617 14 1 5.9826 7.7439 -0.1723 15 1 7.9870 7.3436 -1.4776 16 1 5.9356 8.0176 -2.5811 17 6 3.5700 3.5645 1.2498 18 6 2.0416 3.4585 1.3027 19 8 1.6622 2.0825 1.2212 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3635 0.5138 -0.8899 23 1 1.8932 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 3.9975 0.7990 0.6459 26 1 3.8597 1.0882 -1.1073 27 1 6.8971 5.2118 -3.4170 28 1 3.8628 4.6113 1.1688 29 1 3.9995 3.1322 2.1536 30 1 1.6796 3.8811 2.2400 31 1 1.6095 4.0055 0.4648 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037504509.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:26 Heat of formation + Delta-G solvation = -87.965443 kcal Electronic energy + Delta-G solvation = -14714.556844 eV Core-core repulsion = 12188.877694 eV Total energy + Delta-G solvation = -2525.679150 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.15362 -36.73091 -33.85779 -33.30493 -32.46902 -29.67229 -27.33175 -25.91118 -23.53331 -22.10048 -20.63146 -19.08740 -16.73099 -16.15325 -15.83128 -14.86526 -14.50489 -14.41366 -14.11655 -13.58668 -13.35934 -12.93200 -12.51318 -11.76867 -11.67086 -11.56257 -11.22944 -11.07424 -10.92870 -10.78603 -10.64745 -10.26762 -10.15572 -9.94118 -9.41209 -8.90533 -7.64242 -7.22696 -6.25461 -4.70032 3.09457 3.17681 3.21724 4.01139 4.11625 4.45734 4.50745 5.09599 5.26767 5.38062 5.52635 5.63437 5.65988 5.71435 5.81114 5.97991 6.06117 6.10091 6.14758 6.22150 6.38354 6.42407 6.47745 6.62567 7.40109 7.50069 7.60535 8.06436 8.28831 8.96940 9.36409 10.51607 10.69929 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.051355 B = 0.008249 C = 0.007519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.091609 B = 3393.545667 C = 3723.211125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.114 4.114 3 C 0.078 3.922 4 H 0.057 0.943 5 C 0.093 3.907 6 N -0.646 5.646 7 C 0.560 3.440 8 O -0.577 6.577 9 C -0.545 4.545 10 H 0.074 0.926 11 C 0.087 3.913 12 N -0.769 5.769 13 Si 0.908 3.092 14 H -0.263 1.263 15 H -0.275 1.275 16 H -0.276 1.276 17 C 0.088 3.912 18 C 0.048 3.952 19 O -0.386 6.386 20 H 0.050 0.950 21 H 0.060 0.940 22 H 0.050 0.950 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.048 0.952 26 H 0.089 0.911 27 H 0.269 0.731 28 H 0.100 0.900 29 H 0.049 0.951 30 H 0.092 0.908 31 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.556 -2.700 6.316 10.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.152 4.152 3 C 0.020 3.980 4 H 0.075 0.925 5 C -0.031 4.031 6 N -0.385 5.385 7 C 0.366 3.634 8 O -0.459 6.459 9 C -0.581 4.581 10 H 0.092 0.908 11 C -0.132 4.132 12 N -0.397 5.397 13 Si 0.732 3.268 14 H -0.187 1.187 15 H -0.201 1.201 16 H -0.201 1.201 17 C -0.037 4.037 18 C -0.029 4.029 19 O -0.305 6.305 20 H 0.069 0.931 21 H 0.079 0.921 22 H 0.069 0.931 23 H 0.094 0.906 24 H 0.087 0.913 25 H 0.066 0.934 26 H 0.107 0.893 27 H 0.080 0.920 28 H 0.118 0.882 29 H 0.067 0.933 30 H 0.110 0.890 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.278 -3.154 5.750 10.561 hybrid contribution 0.374 1.094 -0.027 1.157 sum -7.904 -2.060 5.722 9.973 Atomic orbital electron populations 1.21696 0.95544 1.01015 1.02136 1.21492 0.96342 0.94692 1.02630 1.22535 0.94994 0.93487 0.87022 0.92495 1.21810 0.92370 0.86394 1.02513 1.48291 1.50937 1.12575 1.26691 1.18297 0.77150 0.87960 0.79983 1.90587 1.56735 1.64514 1.34095 1.20982 1.36254 0.94583 1.06309 0.90843 1.25737 0.93873 0.99332 0.94304 1.70013 1.27432 1.36258 1.06028 0.86311 0.78757 0.82623 0.79068 1.18701 1.20069 1.20122 1.22083 0.93090 0.99417 0.89096 1.22987 0.95688 0.82735 1.01538 1.87815 1.79963 1.24164 1.38538 0.93097 0.92111 0.93055 0.90594 0.91259 0.93355 0.89266 0.92048 0.88160 0.93278 0.88977 0.93105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.81 37.16 0.36 -1.40 16 2 C -0.11 -1.56 5.65 -26.73 -0.15 -1.72 16 3 C 0.08 1.35 2.78 -26.58 -0.07 1.28 16 4 H 0.06 1.05 8.14 -51.92 -0.42 0.62 16 5 C 0.09 1.93 5.91 -3.53 -0.02 1.91 16 6 N -0.65 -15.24 3.02 -173.93 -0.53 -15.76 16 7 C 0.56 16.17 7.62 -12.98 -0.10 16.08 16 8 O -0.58 -18.85 14.56 5.20 0.08 -18.78 16 9 C -0.54 -15.26 8.86 -35.63 -0.32 -15.58 16 10 H 0.07 1.87 5.73 -52.49 -0.30 1.57 16 11 C 0.09 2.42 5.50 -17.37 -0.10 2.32 16 12 N -0.77 -22.98 11.86 55.55 0.66 -22.33 16 13 Si 0.91 19.89 29.56 -169.99 -5.02 14.87 16 14 H -0.26 -5.52 7.11 56.52 0.40 -5.11 16 15 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 16 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 17 C 0.09 1.69 6.55 -3.54 -0.02 1.66 16 18 C 0.05 0.79 6.99 37.31 0.26 1.05 16 19 O -0.39 -6.67 9.92 -35.23 -0.35 -7.02 16 20 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 21 H 0.06 0.76 7.83 -51.93 -0.41 0.36 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.09 2.00 7.12 -51.93 -0.37 1.63 16 27 H 0.27 7.25 8.29 -40.82 -0.34 6.91 16 28 H 0.10 1.95 5.41 -51.93 -0.28 1.67 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 257.55 15.07 3.88 3.88 Total: -1.00 -33.67 257.55 -5.73 -39.40 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -4.30 Total: 0.13 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: -0.15 Total: 5.60 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: 0.13 Total: -38.09 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -0.27 Total: -25.80 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -33.67 -5.73 -39.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037504509.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.562 kcal (2) G-P(sol) polarization free energy of solvation -33.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds