Wall clock time and date at job start Sun Mar 29 2020 22:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47032 * 2 1 4 4 H 1.09007 * 109.51164 * 304.90270 * 3 2 1 5 5 C 1.53293 * 109.51498 * 184.74868 * 3 2 1 6 6 N 1.47161 * 108.41515 * 187.79823 * 5 3 2 7 7 C 1.34784 * 120.98820 * 230.53312 * 6 5 3 8 8 O 1.21684 * 119.99867 * 355.16785 * 7 6 5 9 9 C 1.46376 * 119.99756 * 175.16636 * 7 6 5 10 10 H 1.08001 * 120.00389 * 7.87604 * 9 7 6 11 11 C 1.40047 * 119.99772 * 187.88781 * 9 7 6 12 12 N 1.30669 * 120.00218 * 359.97438 * 11 9 7 13 13 Si 1.86801 * 120.00037 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47018 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47413 * 119.99722 * 13 11 9 16 16 H 1.48502 * 109.47067 * 239.99576 * 13 11 9 17 17 C 1.47146 * 118.03238 * 50.46656 * 6 5 3 18 18 C 1.53297 * 108.41451 * 309.53273 * 17 6 5 19 19 O 1.42961 * 109.51317 * 64.99939 * 3 2 1 20 20 H 1.09003 * 109.47354 * 179.97438 * 1 2 3 21 21 H 1.09005 * 109.47507 * 299.99805 * 1 2 3 22 22 H 1.09002 * 109.47851 * 59.99793 * 1 2 3 23 23 H 1.09001 * 109.46830 * 240.00429 * 2 1 3 24 24 H 1.08994 * 109.47250 * 120.00113 * 2 1 3 25 25 H 1.09002 * 109.67866 * 307.50095 * 5 3 2 26 26 H 1.09000 * 109.67998 * 68.01547 * 5 3 2 27 27 H 0.96999 * 120.00336 * 179.97438 * 12 11 9 28 28 H 1.08994 * 109.68877 * 189.78913 * 17 6 5 29 29 H 1.09005 * 109.68145 * 69.27217 * 17 6 5 30 30 H 1.09000 * 109.51097 * 172.19881 * 18 17 6 31 31 H 1.09001 * 109.51329 * 292.35715 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6070 1.9817 -0.8427 5 6 3.5682 1.4453 -0.1196 6 7 4.0468 2.8238 0.0712 7 6 4.8958 3.3916 -0.8084 8 8 5.3468 2.7357 -1.7288 9 6 5.2752 4.7971 -0.6563 10 1 4.9792 5.3439 0.2268 11 6 6.0219 5.4329 -1.6561 12 7 6.3803 4.7713 -2.7244 13 14 6.5067 7.2264 -1.4617 14 1 5.9826 7.7439 -0.1723 15 1 7.9870 7.3436 -1.4776 16 1 5.9356 8.0176 -2.5811 17 6 3.5700 3.5645 1.2498 18 6 2.0416 3.4585 1.3027 19 8 1.6622 2.0825 1.2212 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3635 0.5138 -0.8899 23 1 1.8932 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 3.9975 0.7990 0.6459 26 1 3.8597 1.0882 -1.1073 27 1 6.8971 5.2118 -3.4170 28 1 3.8628 4.6113 1.1688 29 1 3.9995 3.1322 2.1536 30 1 1.6796 3.8811 2.2400 31 1 1.6095 4.0055 0.4648 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037504509.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:25 Heat of formation + Delta-G solvation = -112.189622 kcal Electronic energy + Delta-G solvation = -14715.607283 eV Core-core repulsion = 12188.877694 eV Total energy + Delta-G solvation = -2526.729589 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.76031 -38.67581 -35.36162 -34.98196 -34.52913 -31.07002 -29.20877 -27.68239 -25.02740 -23.61942 -22.02900 -20.96639 -18.60781 -17.91260 -17.50570 -16.47199 -16.30005 -15.94474 -15.71429 -15.21824 -14.60610 -14.45829 -14.09069 -13.63137 -13.33487 -13.23831 -12.80475 -12.72748 -12.37271 -12.15376 -12.02689 -11.89484 -11.84302 -11.42288 -11.01927 -10.92731 -9.84912 -9.10756 -8.34054 -6.89176 1.38712 1.39435 1.57403 2.20347 2.41041 2.60971 2.86272 3.51894 3.77908 4.03507 4.05048 4.19928 4.30792 4.39980 4.45950 4.64737 4.67830 4.76670 4.82361 4.97312 5.05861 5.10285 5.23518 5.34385 5.44449 5.65552 6.05581 6.20248 6.28751 6.83258 7.32720 8.38973 8.62272 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.051355 B = 0.008249 C = 0.007519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.091609 B = 3393.545667 C = 3723.211125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 C 0.088 3.912 4 H 0.042 0.958 5 C 0.090 3.910 6 N -0.652 5.652 7 C 0.540 3.460 8 O -0.632 6.632 9 C -0.568 4.568 10 H 0.097 0.903 11 C 0.027 3.973 12 N -0.825 5.825 13 Si 0.999 3.001 14 H -0.242 1.242 15 H -0.270 1.270 16 H -0.268 1.268 17 C 0.082 3.918 18 C 0.053 3.947 19 O -0.382 6.382 20 H 0.073 0.927 21 H 0.057 0.943 22 H 0.049 0.951 23 H 0.082 0.918 24 H 0.078 0.922 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.275 0.725 28 H 0.097 0.903 29 H 0.065 0.935 30 H 0.136 0.864 31 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.744 -1.582 8.121 12.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.148 4.148 3 C 0.029 3.971 4 H 0.060 0.940 5 C -0.034 4.034 6 N -0.390 5.390 7 C 0.346 3.654 8 O -0.519 6.519 9 C -0.604 4.604 10 H 0.115 0.885 11 C -0.187 4.187 12 N -0.454 5.454 13 Si 0.818 3.182 14 H -0.165 1.165 15 H -0.195 1.195 16 H -0.193 1.193 17 C -0.041 4.041 18 C -0.024 4.024 19 O -0.301 6.301 20 H 0.092 0.908 21 H 0.076 0.924 22 H 0.068 0.932 23 H 0.101 0.899 24 H 0.096 0.904 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.115 0.885 29 H 0.083 0.917 30 H 0.153 0.847 31 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -9.518 -2.052 7.616 12.361 hybrid contribution 0.734 0.678 -0.548 1.139 sum -8.784 -1.375 7.068 11.358 Atomic orbital electron populations 1.21656 0.93820 1.02494 1.01880 1.21518 0.97754 0.92079 1.03433 1.22464 0.92172 0.95692 0.86781 0.94002 1.21970 0.95044 0.85086 1.01276 1.48206 1.49914 1.13849 1.27011 1.18763 0.77712 0.88709 0.80197 1.90532 1.59045 1.65773 1.36597 1.21516 1.36691 0.94710 1.07517 0.88540 1.27046 0.93074 1.05286 0.93332 1.70186 1.28512 1.39277 1.07436 0.84953 0.78404 0.74842 0.80011 1.16508 1.19492 1.19270 1.22341 0.95311 0.98802 0.87676 1.23088 0.93320 0.82489 1.03545 1.87836 1.79561 1.24573 1.38143 0.90784 0.92436 0.93224 0.89950 0.90365 0.92230 0.92110 0.91493 0.88506 0.91725 0.84664 0.93794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 9.81 71.98 0.71 -2.36 16 2 C -0.11 -2.85 5.65 30.59 0.17 -2.67 16 3 C 0.09 2.97 2.78 30.69 0.09 3.06 16 4 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 5 C 0.09 3.77 5.91 86.35 0.51 4.28 16 6 N -0.65 -31.17 3.02 -822.42 -2.49 -33.66 16 7 C 0.54 32.18 7.62 86.36 0.66 32.84 16 8 O -0.63 -43.46 14.56 -4.30 -0.06 -43.52 16 9 C -0.57 -32.14 8.86 24.83 0.22 -31.92 16 10 H 0.10 4.81 5.73 -2.91 -0.02 4.80 16 11 C 0.03 1.53 5.50 85.30 0.47 2.00 16 12 N -0.82 -50.80 11.86 21.83 0.26 -50.54 16 13 Si 1.00 40.46 29.56 68.60 2.03 42.49 16 14 H -0.24 -8.90 7.11 99.48 0.71 -8.20 16 15 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 16 H -0.27 -10.42 7.11 99.48 0.71 -9.72 16 17 C 0.08 3.03 6.55 86.36 0.57 3.60 16 18 C 0.05 1.60 6.99 72.08 0.50 2.10 16 19 O -0.38 -12.34 9.92 -148.98 -1.48 -13.81 16 20 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 21 H 0.06 1.29 7.83 -2.38 -0.02 1.27 16 22 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 24 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 26 H 0.06 2.87 7.12 -2.39 -0.02 2.85 16 27 H 0.28 15.27 8.29 -92.71 -0.77 14.50 16 28 H 0.10 3.63 5.41 -2.39 -0.01 3.61 16 29 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 30 H 0.14 2.98 8.14 -2.39 -0.02 2.96 16 31 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -75.59 257.55 3.26 -72.33 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 1.11 Total: 15.79 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: 3.89 Total: 10.93 kcal Atomic # 7 Polarization: -81.98 SS G_CDS: -2.23 Total: -84.20 kcal Atomic # 8 Polarization: -55.80 SS G_CDS: -1.54 Total: -57.34 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 2.03 Total: 42.49 kcal Total: -75.59 3.26 -72.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037504509.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.862 kcal (2) G-P(sol) polarization free energy of solvation -75.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds