Wall clock time and date at job start Sun Mar 29 2020 22:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46699 * 2 1 4 4 H 1.08996 * 109.50935 * 54.99793 * 3 2 1 5 5 C 1.53296 * 109.50984 * 175.10176 * 3 2 1 6 6 N 1.47264 * 108.32409 * 172.23554 * 5 3 2 7 7 C 1.34772 * 120.96048 * 129.46568 * 6 5 3 8 8 O 1.21689 * 119.99824 * 354.79586 * 7 6 5 9 9 C 1.46370 * 120.00128 * 174.79145 * 7 6 5 10 10 H 1.07997 * 120.00076 * 5.00257 * 9 7 6 11 11 C 1.40054 * 120.00106 * 185.00222 * 9 7 6 12 12 N 1.30668 * 119.99902 * 0.02562 * 11 9 7 13 13 Si 1.86806 * 120.00078 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47020 * 60.00238 * 13 11 9 15 15 H 1.48491 * 109.47081 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.46782 * 300.00036 * 13 11 9 17 17 C 1.47152 * 118.05948 * 309.48970 * 6 5 3 18 18 C 1.53294 * 108.38610 * 50.53298 * 17 6 5 19 19 O 1.42961 * 109.51159 * 294.90069 * 3 2 1 20 20 H 1.09002 * 109.47570 * 299.99668 * 1 2 3 21 21 H 1.09000 * 109.47401 * 60.00505 * 1 2 3 22 22 H 1.09001 * 109.46643 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47540 * 240.00363 * 2 1 3 24 24 H 1.09000 * 109.47401 * 119.99495 * 2 1 3 25 25 H 1.08999 * 109.67743 * 291.99985 * 5 3 2 26 26 H 1.08991 * 109.68320 * 52.55437 * 5 3 2 27 27 H 0.97002 * 120.00025 * 179.97438 * 12 11 9 28 28 H 1.08996 * 109.68102 * 290.81315 * 17 6 5 29 29 H 1.08996 * 109.68513 * 170.25877 * 17 6 5 30 30 H 1.08997 * 109.51933 * 187.77393 * 18 17 6 31 31 H 1.09000 * 109.55325 * 67.64483 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6056 1.9822 0.8416 5 6 3.5679 1.4455 0.1234 6 7 4.0452 2.8256 -0.0670 7 6 4.8912 3.3945 0.8144 8 8 5.1974 2.8027 1.8327 9 6 5.4419 4.7240 0.5468 10 1 5.1088 5.2830 -0.3151 11 6 6.4007 5.2713 1.4086 12 7 6.8040 4.5947 2.4513 13 14 7.1030 6.9684 1.0675 14 1 6.0051 7.9682 1.0711 15 1 8.0924 7.3151 2.1191 16 1 7.7701 6.9704 -0.2592 17 6 3.5709 3.5653 -1.2474 18 6 2.0428 3.4581 -1.3034 19 8 1.6641 2.0819 -1.2222 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5137 -0.8899 24 1 1.8934 -0.5137 0.8900 25 1 3.8570 1.0890 1.1120 26 1 3.9992 0.7993 -0.6411 27 1 7.4684 4.9736 3.0479 28 1 4.0026 3.1324 -2.1498 29 1 3.8627 4.6124 -1.1661 30 1 1.6822 3.8801 -2.2414 31 1 1.6078 4.0052 -0.4670 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037504510.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:28 Heat of formation + Delta-G solvation = -112.138275 kcal Electronic energy + Delta-G solvation = -14701.387869 eV Core-core repulsion = 12174.660507 eV Total energy + Delta-G solvation = -2526.727363 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.75751 -38.66872 -35.35848 -34.98033 -34.52397 -31.06735 -29.22004 -27.66878 -25.02594 -23.61505 -22.02349 -20.97870 -18.59353 -17.90379 -17.50179 -16.51316 -16.30206 -15.90037 -15.71003 -15.21270 -14.60942 -14.47308 -14.06037 -13.67244 -13.32377 -13.22211 -12.73518 -12.73338 -12.37219 -12.18230 -12.08688 -11.90899 -11.84797 -11.42395 -11.01495 -10.88899 -9.85886 -9.10237 -8.33075 -6.89343 1.39004 1.42427 1.54439 2.20808 2.41158 2.61131 2.86113 3.52820 3.76629 4.03531 4.04950 4.19858 4.29840 4.40698 4.46558 4.64925 4.67018 4.76352 4.82162 4.97679 5.05736 5.10185 5.23413 5.33589 5.44299 5.65798 6.04970 6.19842 6.28782 6.83078 7.33185 8.39460 8.62456 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.055209 B = 0.008105 C = 0.007333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.040364 B = 3453.894986 C = 3817.331541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 C 0.087 3.913 4 H 0.041 0.959 5 C 0.089 3.911 6 N -0.653 5.653 7 C 0.539 3.461 8 O -0.632 6.632 9 C -0.570 4.570 10 H 0.096 0.904 11 C 0.028 3.972 12 N -0.823 5.823 13 Si 0.999 3.001 14 H -0.252 1.252 15 H -0.275 1.275 16 H -0.252 1.252 17 C 0.083 3.917 18 C 0.052 3.948 19 O -0.382 6.382 20 H 0.049 0.951 21 H 0.056 0.944 22 H 0.073 0.927 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.275 0.725 28 H 0.065 0.935 29 H 0.096 0.904 30 H 0.136 0.864 31 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.454 -1.710 -8.266 12.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.148 4.148 3 C 0.029 3.971 4 H 0.060 0.940 5 C -0.035 4.035 6 N -0.390 5.390 7 C 0.346 3.654 8 O -0.519 6.519 9 C -0.606 4.606 10 H 0.114 0.886 11 C -0.187 4.187 12 N -0.453 5.453 13 Si 0.818 3.182 14 H -0.176 1.176 15 H -0.200 1.200 16 H -0.176 1.176 17 C -0.040 4.040 18 C -0.025 4.025 19 O -0.301 6.301 20 H 0.068 0.932 21 H 0.075 0.925 22 H 0.092 0.908 23 H 0.096 0.904 24 H 0.101 0.899 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.114 0.886 30 H 0.154 0.846 31 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.283 -2.155 -7.712 12.259 hybrid contribution 0.779 0.661 0.477 1.128 sum -8.503 -1.494 -7.236 11.265 Atomic orbital electron populations 1.21657 0.93837 1.02494 1.01865 1.21521 0.97744 0.92090 1.03434 1.22464 0.92265 0.95692 0.86714 0.94048 1.21995 0.95079 0.85046 1.01332 1.48223 1.50274 1.13837 1.26714 1.18737 0.77682 0.87475 0.81518 1.90534 1.64528 1.67137 1.29739 1.21477 1.25050 1.01090 1.12960 0.88595 1.27051 0.95184 1.03570 0.92939 1.70183 1.24273 1.39026 1.11776 0.85054 0.78464 0.75588 0.79123 1.17578 1.19984 1.17613 1.22325 0.95174 0.98687 0.87807 1.23096 0.93324 0.82515 1.03541 1.87838 1.79658 1.24535 1.38064 0.93227 0.92450 0.90785 0.90358 0.89947 0.91994 0.92119 0.91490 0.91684 0.88623 0.84626 0.93880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 9.81 71.98 0.71 -2.36 16 2 C -0.11 -2.85 5.65 30.60 0.17 -2.67 16 3 C 0.09 2.96 2.77 30.70 0.09 3.05 16 4 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 5 C 0.09 3.74 5.95 86.33 0.51 4.25 16 6 N -0.65 -31.21 3.02 -822.18 -2.48 -33.69 16 7 C 0.54 32.17 7.63 86.36 0.66 32.83 16 8 O -0.63 -43.42 14.51 -4.31 -0.06 -43.48 16 9 C -0.57 -32.29 8.86 24.83 0.22 -32.07 16 10 H 0.10 4.78 5.76 -2.91 -0.02 4.76 16 11 C 0.03 1.54 5.50 85.31 0.47 2.01 16 12 N -0.82 -50.78 11.84 21.84 0.26 -50.53 16 13 Si 1.00 40.49 29.56 68.60 2.03 42.52 16 14 H -0.25 -9.52 7.11 99.48 0.71 -8.82 16 15 H -0.28 -10.82 7.11 99.48 0.71 -10.11 16 16 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 17 C 0.08 3.08 6.51 86.35 0.56 3.64 16 18 C 0.05 1.59 6.98 72.08 0.50 2.09 16 19 O -0.38 -12.32 9.93 -148.98 -1.48 -13.80 16 20 H 0.05 1.08 8.14 -2.39 -0.02 1.07 16 21 H 0.06 1.29 7.83 -2.39 -0.02 1.27 16 22 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.06 2.92 7.07 -2.39 -0.02 2.91 16 26 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 27 H 0.28 15.37 8.29 -92.71 -0.77 14.60 16 28 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.10 3.57 5.50 -2.39 -0.01 3.56 16 30 H 0.14 2.98 8.14 -2.39 -0.02 2.96 16 31 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -75.56 257.55 3.26 -72.30 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: 1.11 Total: 15.91 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: 3.89 Total: 10.78 kcal Atomic # 7 Polarization: -81.99 SS G_CDS: -2.23 Total: -84.22 kcal Atomic # 8 Polarization: -55.74 SS G_CDS: -1.54 Total: -57.28 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.52 kcal Total: -75.56 3.26 -72.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037504510.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.840 kcal (2) G-P(sol) polarization free energy of solvation -75.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds