Wall clock time and date at job start Sun Mar 29 2020 21:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00150 * 2 1 4 4 H 1.48504 * 109.47410 * 270.00560 * 3 2 1 5 5 H 1.48508 * 109.46897 * 30.00536 * 3 2 1 6 6 H 1.48503 * 109.47332 * 149.99934 * 3 2 1 7 7 C 1.37874 * 119.99916 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00043 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00158 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47588 * 180.02562 * 9 7 2 11 11 C 1.34776 * 120.00573 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99602 * 359.72274 * 11 10 9 13 13 C 1.50698 * 119.99995 * 180.02562 * 11 10 9 14 14 H 1.08998 * 115.55344 * 51.12037 * 13 11 10 15 15 C 1.53003 * 117.49664 * 196.82502 * 13 11 10 16 16 C 1.52999 * 60.00013 * 107.48742 * 15 13 11 17 17 H 1.08999 * 117.51412 * 107.47766 * 16 15 13 18 18 C 1.50699 * 117.50114 * 252.50965 * 16 15 13 19 19 O 1.20825 * 120.00157 * 332.78943 * 18 16 15 20 20 O 1.34232 * 119.99690 * 152.78721 * 18 16 15 21 21 H 0.96998 * 119.99808 * 359.97438 * 1 2 3 22 22 H 1.09006 * 109.47451 * 59.99845 * 9 7 2 23 23 H 1.08997 * 109.46896 * 300.00166 * 9 7 2 24 24 H 0.97009 * 119.99562 * 359.97438 * 10 9 7 25 25 H 1.08995 * 117.50113 * 214.97937 * 15 13 11 26 26 H 1.09003 * 117.49523 * 0.02562 * 15 13 11 27 27 H 0.96702 * 116.99643 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7538 -4.8834 0.0000 12 8 0.5614 -5.1049 0.0055 13 6 2.7331 -6.0288 0.0006 14 1 3.5077 -5.9847 0.7661 15 6 2.2048 -7.4101 -0.3917 16 6 3.1103 -6.6363 -1.3520 17 1 4.1331 -6.9919 -1.4763 18 6 2.4742 -6.0435 -2.5828 19 8 1.4834 -6.5494 -3.0542 20 8 3.0084 -4.9532 -3.1555 21 1 -0.4850 0.8400 0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6248 -2.5570 0.8897 24 1 3.1567 -3.4354 -0.0009 25 1 2.6317 -8.2750 0.1159 26 1 1.1490 -7.4902 -0.6506 27 1 2.5654 -4.6095 -3.9433 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037792535.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:25 Heat of formation + Delta-G solvation = -138.989581 kcal Electronic energy + Delta-G solvation = -13982.735284 eV Core-core repulsion = 11319.010466 eV Total energy + Delta-G solvation = -2663.724817 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.083 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.75172 -40.41229 -37.57097 -36.91839 -36.14205 -34.35737 -29.65963 -26.86836 -25.75828 -23.68565 -21.85810 -21.14607 -19.55143 -18.80815 -18.08523 -17.38518 -17.05647 -16.74723 -16.04885 -15.81328 -15.28377 -14.81720 -14.16220 -13.94490 -13.87552 -12.99000 -12.94860 -12.72918 -12.63729 -12.24688 -12.01777 -11.69169 -11.53730 -11.47196 -10.89230 -10.82079 -9.89423 -8.30440 -6.47633 1.00442 1.43396 1.45801 1.51765 1.57390 1.93184 2.28453 2.46847 2.76569 3.04767 3.55188 3.62606 3.89946 4.22885 4.36242 4.73934 4.84154 5.06369 5.09929 5.18372 5.45234 5.51735 5.64996 5.81797 6.63131 6.83058 6.86974 7.21413 7.42174 8.82028 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.043382 B = 0.007499 C = 0.007141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.279904 B = 3732.703162 C = 3920.247492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.987 3.013 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.253 1.253 7 C -0.554 4.554 8 H 0.087 0.913 9 C 0.267 3.733 10 N -0.694 5.694 11 C 0.507 3.493 12 O -0.602 6.602 13 C -0.160 4.160 14 H 0.189 0.811 15 C -0.113 4.113 16 C -0.132 4.132 17 H 0.203 0.797 18 C 0.494 3.506 19 O -0.551 6.551 20 O -0.505 6.505 21 H 0.269 0.731 22 H -0.019 1.019 23 H -0.013 1.013 24 H 0.412 0.588 25 H 0.170 0.830 26 H 0.076 0.924 27 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.028 -10.814 -1.736 17.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.810 3.190 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.176 1.176 7 C -0.591 4.591 8 H 0.105 0.895 9 C 0.144 3.856 10 N -0.343 5.343 11 C 0.293 3.707 12 O -0.485 6.485 13 C -0.181 4.181 14 H 0.206 0.794 15 C -0.150 4.150 16 C -0.151 4.151 17 H 0.220 0.780 18 C 0.338 3.662 19 O -0.441 6.441 20 O -0.318 6.318 21 H 0.077 0.923 22 H -0.001 1.001 23 H 0.005 0.995 24 H 0.248 0.752 25 H 0.187 0.813 26 H 0.095 0.905 27 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 11.970 -11.096 -1.516 16.392 hybrid contribution -0.467 1.389 -0.713 1.630 sum 11.503 -9.707 -2.229 15.215 Atomic orbital electron populations 1.70152 1.08425 1.28612 1.50034 1.26100 0.95738 1.04038 0.93767 0.85123 0.78537 0.76733 0.78614 1.19607 1.21094 1.17618 1.21602 0.94384 0.90304 1.52846 0.89510 1.18542 0.88694 0.84549 0.93809 1.46115 1.11349 1.05169 1.71654 1.20681 0.89008 0.84921 0.76041 1.90672 1.19533 1.85613 1.52656 1.22536 1.02428 0.93268 0.99859 0.79421 1.23282 0.99538 0.94366 0.97834 1.22102 1.04511 1.04184 0.84303 0.78030 1.23135 0.80854 0.77419 0.84808 1.90709 1.26775 1.62137 1.64523 1.84488 1.58206 1.42521 1.46535 0.92256 1.00093 0.99496 0.75221 0.81261 0.90494 0.71563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.80 13.29 21.45 0.28 -56.51 15 2 C 0.00 0.17 5.46 84.65 0.46 0.63 15 3 Si 0.99 42.07 29.54 68.60 2.03 44.10 15 4 H -0.27 -11.15 7.11 99.48 0.71 -10.44 15 5 H -0.29 -12.11 7.11 99.48 0.71 -11.40 15 6 H -0.25 -9.91 7.11 99.48 0.71 -9.20 15 7 C -0.55 -30.06 9.28 25.60 0.24 -29.82 15 8 H 0.09 4.21 7.60 -2.91 -0.02 4.19 15 9 C 0.27 14.86 5.43 85.63 0.46 15.32 15 10 N -0.69 -29.45 5.55 -466.80 -2.59 -32.04 15 11 C 0.51 20.56 6.58 87.66 0.58 21.14 15 12 O -0.60 -31.37 16.40 -3.02 -0.05 -31.42 15 13 C -0.16 -3.92 6.19 -11.54 -0.07 -3.99 15 14 H 0.19 2.76 8.14 -2.39 -0.02 2.74 15 15 C -0.11 -2.48 9.55 30.59 0.29 -2.19 15 16 C -0.13 -2.79 6.29 -11.54 -0.07 -2.86 15 17 H 0.20 2.03 8.14 -2.39 -0.02 2.01 15 18 C 0.49 15.06 7.02 71.24 0.50 15.56 15 19 O -0.55 -21.31 17.36 21.97 0.38 -20.93 15 20 O -0.51 -13.60 13.42 -51.44 -0.69 -14.29 15 21 H 0.27 15.24 8.31 -92.71 -0.77 14.47 15 22 H -0.02 -1.20 8.14 -2.38 -0.02 -1.22 15 23 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 15 24 H 0.41 14.24 8.32 -92.70 -0.77 13.46 15 25 H 0.17 1.92 8.14 -2.39 -0.02 1.90 15 26 H 0.08 2.40 7.56 -2.39 -0.02 2.38 15 27 H 0.42 8.91 9.10 -74.06 -0.67 8.24 15 Total: -1.00 -82.52 254.26 1.52 -81.00 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -0.23 Total: 16.31 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: 2.39 Total: 13.78 kcal Atomic # 7 Polarization: -86.24 SS G_CDS: -2.30 Total: -88.55 kcal Atomic # 8 Polarization: -66.28 SS G_CDS: -0.36 Total: -66.64 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -82.52 1.52 -81.00 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037792535.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.990 kcal (2) G-P(sol) polarization free energy of solvation -82.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds