Wall clock time and date at job start Sun Mar 29 2020 21:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46956 * 111.00293 * 2 1 4 4 C 1.53056 * 109.38342 * 183.17592 * 3 2 1 5 5 N 1.46963 * 109.35944 * 301.62902 * 4 3 2 6 6 C 1.46903 * 110.99595 * 183.16796 * 5 4 3 7 7 C 1.53000 * 109.47135 * 46.18010 * 6 5 4 8 8 C 1.52997 * 109.47021 * 180.02562 * 7 6 5 9 9 C 1.50696 * 109.47233 * 179.97438 * 8 7 6 10 10 H 1.08007 * 119.99822 * 0.02562 * 9 8 7 11 11 C 1.37874 * 120.00214 * 179.97438 * 9 8 7 12 12 N 1.31509 * 120.00078 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99920 * 179.97438 * 11 9 8 14 14 H 1.48508 * 109.46992 * 60.00142 * 13 11 9 15 15 H 1.48502 * 109.47135 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47569 * 299.99870 * 13 11 9 17 17 C 1.46956 * 110.89784 * 59.28921 * 5 4 3 18 18 C 1.46962 * 110.99604 * 123.79812 * 2 1 3 19 19 H 1.09006 * 109.46670 * 60.00118 * 1 2 3 20 20 H 1.09000 * 109.47249 * 179.97438 * 1 2 3 21 21 H 1.08993 * 109.47127 * 300.00706 * 1 2 3 22 22 H 1.09002 * 109.48806 * 303.15319 * 3 2 1 23 23 H 1.09002 * 109.49141 * 63.19591 * 3 2 1 24 24 H 1.08992 * 109.49038 * 61.57437 * 4 3 2 25 25 H 1.08994 * 109.48641 * 181.64718 * 4 3 2 26 26 H 1.08994 * 109.47069 * 166.17990 * 6 5 4 27 27 H 1.09001 * 109.47054 * 286.17919 * 6 5 4 28 28 H 1.09005 * 109.46953 * 299.99531 * 7 6 5 29 29 H 1.08991 * 109.47188 * 60.00097 * 7 6 5 30 30 H 1.09004 * 109.46942 * 299.99929 * 8 7 6 31 31 H 1.09001 * 109.47310 * 59.99823 * 8 7 6 32 32 H 0.97001 * 120.00051 * 179.97438 * 12 11 9 33 33 H 1.09002 * 109.48806 * 180.71933 * 17 5 4 34 34 H 1.09003 * 109.49203 * 60.65575 * 17 5 4 35 35 H 1.09001 * 109.48625 * 296.77747 * 18 2 1 36 36 H 1.09003 * 109.48941 * 56.82355 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5236 1.3295 -0.0800 5 7 4.0501 0.5658 1.0599 6 6 5.5191 0.5658 1.0600 7 6 6.0292 1.9863 0.8095 8 6 7.5591 1.9861 0.8090 9 6 8.0616 3.3852 0.5617 10 1 7.3598 4.1937 0.4195 11 6 9.4171 3.6332 0.5179 12 7 10.2717 2.6490 0.6924 13 14 10.0398 5.3673 0.2105 14 1 9.5447 6.2683 1.2823 15 1 11.5249 5.3674 0.2114 16 1 9.5451 5.8451 -1.1056 17 6 3.5234 -0.8061 1.0599 18 6 1.9956 -0.7632 1.1402 19 1 -0.3633 0.5139 -0.8901 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 1.6014 1.9128 -0.8603 23 1 1.6935 1.8775 0.9171 24 1 3.8258 0.8485 -1.0102 25 1 3.9176 2.3453 -0.0506 26 1 5.8823 0.2143 2.0257 27 1 5.8824 -0.0949 0.2728 28 1 5.6659 2.3377 -0.1563 29 1 5.6659 2.6469 1.5967 30 1 7.9227 1.6345 1.7746 31 1 7.9221 1.3256 0.0216 32 1 11.2253 2.8234 0.6613 33 1 3.9176 -1.3470 1.9202 34 1 3.8253 -1.3116 0.1426 35 1 1.6936 -0.2820 2.0704 36 1 1.6009 -1.7789 1.1113 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042221665.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:37 Heat of formation + Delta-G solvation = -1.556641 kcal Electronic energy + Delta-G solvation = -14276.224786 eV Core-core repulsion = 11987.844359 eV Total energy + Delta-G solvation = -2288.380427 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.20569 -35.93197 -33.46887 -31.47302 -30.75161 -28.44748 -25.89358 -24.01877 -23.42993 -22.05126 -20.03116 -19.41565 -16.46627 -15.85038 -15.15194 -14.87834 -14.83664 -14.56642 -14.34260 -13.91927 -13.37385 -12.51720 -12.36232 -12.13106 -12.05693 -11.47177 -11.32244 -11.18814 -11.04707 -10.79247 -10.68982 -10.48291 -10.27040 -9.60874 -9.30652 -9.02923 -8.44577 -8.31516 -7.99533 -5.96952 -3.99156 3.35468 3.39565 3.42205 3.87793 4.18845 4.49136 4.93020 4.98342 5.15753 5.28206 5.37995 5.38823 5.50227 5.51324 5.58715 5.69179 5.78894 5.80932 5.95592 5.98870 6.11990 6.16924 6.33204 6.71943 6.78499 6.94146 6.95861 7.11918 7.41045 7.44269 7.70514 7.85966 8.03238 8.46389 9.07710 9.64658 11.14515 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.067046 B = 0.005294 C = 0.004985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.522872 B = 5288.184537 C = 5615.644813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.547 5.547 3 C 0.057 3.943 4 C 0.051 3.949 5 N -0.542 5.542 6 C 0.056 3.944 7 C -0.112 4.112 8 C 0.022 3.978 9 C -0.519 4.519 10 H 0.054 0.946 11 C 0.056 3.944 12 N -0.897 5.897 13 Si 0.892 3.108 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.277 1.277 17 C 0.055 3.945 18 C 0.058 3.942 19 H 0.066 0.934 20 H 0.065 0.935 21 H 0.024 0.976 22 H 0.076 0.924 23 H 0.041 0.959 24 H 0.039 0.961 25 H 0.092 0.908 26 H 0.071 0.929 27 H 0.029 0.971 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.016 0.984 31 H 0.014 0.986 32 H 0.261 0.739 33 H 0.077 0.923 34 H 0.039 0.961 35 H 0.041 0.959 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.790 -5.753 -0.370 17.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.272 5.272 3 C -0.071 4.071 4 C -0.077 4.077 5 N -0.267 5.267 6 C -0.071 4.071 7 C -0.150 4.150 8 C -0.015 4.015 9 C -0.558 4.558 10 H 0.072 0.928 11 C -0.145 4.145 12 N -0.536 5.536 13 Si 0.720 3.280 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.203 1.203 17 C -0.073 4.073 18 C -0.070 4.070 19 H 0.085 0.915 20 H 0.084 0.916 21 H 0.043 0.957 22 H 0.094 0.906 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.110 0.890 26 H 0.089 0.911 27 H 0.048 0.952 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.034 0.966 31 H 0.032 0.968 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.598 -5.797 -0.360 17.584 hybrid contribution 0.447 0.879 -0.159 0.999 sum -16.150 -4.918 -0.519 16.890 Atomic orbital electron populations 1.22331 0.87579 1.01777 1.00556 1.62167 1.07484 1.14533 1.43058 1.22220 0.95386 0.88748 1.00755 1.22261 0.93141 1.00017 0.92275 1.62271 1.09206 1.12739 1.42500 1.22284 0.84663 0.99462 1.00650 1.21785 0.99629 0.93249 1.00292 1.19066 0.88312 0.96996 0.97168 1.21211 0.91544 0.94259 1.48751 0.92772 1.25021 0.97072 0.96937 0.95422 1.69954 1.02033 1.31314 1.50299 0.86662 0.77570 0.84983 0.78799 1.20239 1.21308 1.20267 1.22133 0.93776 0.90524 1.00905 1.22163 0.95078 0.97958 0.91794 0.91480 0.91595 0.95739 0.90563 0.94084 0.94236 0.89009 0.91078 0.95236 0.93161 0.92622 0.96561 0.96784 0.92983 0.90478 0.94265 0.94122 0.90696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.60 60.06 0.58 0.82 16 2 N -0.55 -6.71 4.97 -242.75 -1.21 -7.92 16 3 C 0.06 0.73 5.62 -3.76 -0.02 0.71 16 4 C 0.05 0.77 4.93 -3.76 -0.02 0.75 16 5 N -0.54 -8.67 4.86 -234.46 -1.14 -9.81 16 6 C 0.06 1.02 5.28 -3.82 -0.02 1.00 16 7 C -0.11 -2.36 4.41 -26.73 -0.12 -2.48 16 8 C 0.02 0.58 4.97 -27.89 -0.14 0.45 16 9 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 10 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 11 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 12 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 13 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 C 0.06 0.75 5.58 -3.77 -0.02 0.73 16 18 C 0.06 0.69 5.62 -3.76 -0.02 0.67 16 19 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 20 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 21 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 22 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.09 1.44 5.99 -51.93 -0.31 1.13 16 26 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.03 0.54 8.08 -51.93 -0.42 0.12 16 28 H 0.05 1.04 6.26 -51.93 -0.33 0.71 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.75 8.13 -51.93 -0.42 0.33 16 LS Contribution 284.91 15.07 4.29 4.29 Total: -1.00 -30.47 284.91 -9.04 -39.52 By element: Atomic # 1 Polarization: 1.19 SS G_CDS: -6.51 Total: -5.32 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -0.19 Total: -11.06 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: -1.61 Total: -44.31 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.47 -9.04 -39.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042221665.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.961 kcal (2) G-P(sol) polarization free energy of solvation -30.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds