Wall clock time and date at job start Sun Mar 29 2020 21:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46956 * 111.00293 * 2 1 4 4 C 1.53056 * 109.38342 * 183.17592 * 3 2 1 5 5 N 1.46963 * 109.35944 * 301.62902 * 4 3 2 6 6 C 1.46903 * 110.99595 * 183.16796 * 5 4 3 7 7 C 1.53000 * 109.47135 * 46.18010 * 6 5 4 8 8 C 1.52997 * 109.47021 * 180.02562 * 7 6 5 9 9 C 1.50696 * 109.47233 * 179.97438 * 8 7 6 10 10 H 1.08007 * 119.99822 * 0.02562 * 9 8 7 11 11 C 1.37874 * 120.00214 * 179.97438 * 9 8 7 12 12 N 1.31509 * 120.00078 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99920 * 179.97438 * 11 9 8 14 14 H 1.48508 * 109.46992 * 60.00142 * 13 11 9 15 15 H 1.48502 * 109.47135 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47569 * 299.99870 * 13 11 9 17 17 C 1.46956 * 110.89784 * 59.28921 * 5 4 3 18 18 C 1.46962 * 110.99604 * 123.79812 * 2 1 3 19 19 H 1.09006 * 109.46670 * 60.00118 * 1 2 3 20 20 H 1.09000 * 109.47249 * 179.97438 * 1 2 3 21 21 H 1.08993 * 109.47127 * 300.00706 * 1 2 3 22 22 H 1.09002 * 109.48806 * 303.15319 * 3 2 1 23 23 H 1.09002 * 109.49141 * 63.19591 * 3 2 1 24 24 H 1.08992 * 109.49038 * 61.57437 * 4 3 2 25 25 H 1.08994 * 109.48641 * 181.64718 * 4 3 2 26 26 H 1.08994 * 109.47069 * 166.17990 * 6 5 4 27 27 H 1.09001 * 109.47054 * 286.17919 * 6 5 4 28 28 H 1.09005 * 109.46953 * 299.99531 * 7 6 5 29 29 H 1.08991 * 109.47188 * 60.00097 * 7 6 5 30 30 H 1.09004 * 109.46942 * 299.99929 * 8 7 6 31 31 H 1.09001 * 109.47310 * 59.99823 * 8 7 6 32 32 H 0.97001 * 120.00051 * 179.97438 * 12 11 9 33 33 H 1.09002 * 109.48806 * 180.71933 * 17 5 4 34 34 H 1.09003 * 109.49203 * 60.65575 * 17 5 4 35 35 H 1.09001 * 109.48625 * 296.77747 * 18 2 1 36 36 H 1.09003 * 109.48941 * 56.82355 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5236 1.3295 -0.0800 5 7 4.0501 0.5658 1.0599 6 6 5.5191 0.5658 1.0600 7 6 6.0292 1.9863 0.8095 8 6 7.5591 1.9861 0.8090 9 6 8.0616 3.3852 0.5617 10 1 7.3598 4.1937 0.4195 11 6 9.4171 3.6332 0.5179 12 7 10.2717 2.6490 0.6924 13 14 10.0398 5.3673 0.2105 14 1 9.5447 6.2683 1.2823 15 1 11.5249 5.3674 0.2114 16 1 9.5451 5.8451 -1.1056 17 6 3.5234 -0.8061 1.0599 18 6 1.9956 -0.7632 1.1402 19 1 -0.3633 0.5139 -0.8901 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 1.6014 1.9128 -0.8603 23 1 1.6935 1.8775 0.9171 24 1 3.8258 0.8485 -1.0102 25 1 3.9176 2.3453 -0.0506 26 1 5.8823 0.2143 2.0257 27 1 5.8824 -0.0949 0.2728 28 1 5.6659 2.3377 -0.1563 29 1 5.6659 2.6469 1.5967 30 1 7.9227 1.6345 1.7746 31 1 7.9221 1.3256 0.0216 32 1 11.2253 2.8234 0.6613 33 1 3.9176 -1.3470 1.9202 34 1 3.8253 -1.3116 0.1426 35 1 1.6936 -0.2820 2.0704 36 1 1.6009 -1.7789 1.1113 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042221665.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:37 Heat of formation + Delta-G solvation = -22.937143 kcal Electronic energy + Delta-G solvation = -14277.151914 eV Core-core repulsion = 11987.844359 eV Total energy + Delta-G solvation = -2289.307555 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.32606 -37.23269 -35.40369 -33.24863 -31.88600 -29.82067 -27.53487 -25.25863 -24.64570 -23.62688 -21.60103 -20.66277 -18.51282 -17.17537 -16.49848 -16.33782 -16.01055 -15.85060 -15.69180 -15.15965 -14.77015 -14.27486 -13.70026 -13.46000 -13.33351 -12.94688 -12.78761 -12.59969 -12.49589 -12.32670 -12.24640 -11.82168 -11.74945 -11.46342 -11.30000 -11.04696 -10.54541 -9.41402 -9.23834 -8.19845 -6.31239 1.40302 1.43686 1.51598 2.41276 2.92385 3.00417 3.13266 3.89776 4.02354 4.09190 4.22229 4.27560 4.40007 4.48380 4.56106 4.63733 4.67243 4.70290 4.81987 4.89092 4.92501 4.95087 5.02086 5.09476 5.11696 5.23946 5.50203 5.72336 5.84330 5.96049 5.98445 6.17101 6.17927 6.27308 6.85151 7.38045 8.92055 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.067046 B = 0.005294 C = 0.004985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.522872 B = 5288.184537 C = 5615.644813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.561 5.561 3 C 0.064 3.936 4 C 0.050 3.950 5 N -0.546 5.546 6 C 0.067 3.933 7 C -0.095 4.095 8 C 0.026 3.974 9 C -0.544 4.544 10 H 0.060 0.940 11 C -0.001 4.001 12 N -0.934 5.934 13 Si 0.966 3.034 14 H -0.267 1.267 15 H -0.282 1.282 16 H -0.266 1.266 17 C 0.053 3.947 18 C 0.063 3.937 19 H 0.075 0.925 20 H 0.079 0.921 21 H 0.028 0.972 22 H 0.091 0.909 23 H 0.038 0.962 24 H 0.029 0.971 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.023 0.977 28 H 0.054 0.946 29 H 0.053 0.947 30 H -0.008 1.008 31 H -0.011 1.011 32 H 0.264 0.736 33 H 0.086 0.914 34 H 0.032 0.968 35 H 0.039 0.961 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.299 -5.177 -0.567 19.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.286 5.286 3 C -0.065 4.065 4 C -0.078 4.078 5 N -0.271 5.271 6 C -0.060 4.060 7 C -0.133 4.133 8 C -0.012 4.012 9 C -0.582 4.582 10 H 0.078 0.922 11 C -0.198 4.198 12 N -0.574 5.574 13 Si 0.790 3.210 14 H -0.191 1.191 15 H -0.208 1.208 16 H -0.191 1.191 17 C -0.075 4.075 18 C -0.065 4.065 19 H 0.094 0.906 20 H 0.098 0.902 21 H 0.046 0.954 22 H 0.110 0.890 23 H 0.056 0.944 24 H 0.047 0.953 25 H 0.099 0.901 26 H 0.088 0.912 27 H 0.041 0.959 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.011 0.989 31 H 0.008 0.992 32 H 0.073 0.927 33 H 0.105 0.895 34 H 0.051 0.949 35 H 0.057 0.943 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -18.137 -5.228 -0.557 18.884 hybrid contribution 0.900 0.645 -0.100 1.111 sum -17.238 -4.583 -0.656 17.849 Atomic orbital electron populations 1.22390 0.85644 1.02918 1.01149 1.62184 1.09278 1.13948 1.43224 1.22138 0.93443 0.89555 1.01326 1.22272 0.95057 0.99068 0.91425 1.62273 1.07362 1.14496 1.42985 1.22030 0.86552 0.97121 1.00310 1.21527 0.95923 0.95333 1.00476 1.18967 0.91806 0.95611 0.94798 1.21654 0.92252 0.95341 1.48955 0.92200 1.25993 0.97295 1.01663 0.94866 1.70092 1.02453 1.33830 1.51064 0.85489 0.77003 0.79261 0.79221 1.19138 1.20766 1.19118 1.22244 0.95306 0.88979 1.01009 1.22156 0.93485 0.99225 0.91661 0.90615 0.90229 0.95385 0.89023 0.94360 0.95272 0.90066 0.91179 0.95891 0.92720 0.92797 0.98938 0.99242 0.92743 0.89520 0.94940 0.94321 0.88449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.60 127.69 1.23 1.65 16 2 N -0.56 -12.45 4.97 -921.91 -4.58 -17.03 16 3 C 0.06 1.52 5.62 86.31 0.49 2.00 16 4 C 0.05 1.47 4.93 86.31 0.43 1.90 16 5 N -0.55 -17.10 4.86 -895.70 -4.35 -21.45 16 6 C 0.07 2.47 5.28 86.30 0.46 2.93 16 7 C -0.09 -4.07 4.41 30.59 0.14 -3.93 16 8 C 0.03 1.40 4.97 29.85 0.15 1.55 16 9 C -0.54 -31.67 9.11 25.60 0.23 -31.44 16 10 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 11 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 12 N -0.93 -57.80 13.29 21.45 0.28 -57.52 16 13 Si 0.97 44.78 29.54 68.60 2.03 46.81 16 14 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 15 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 16 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 17 C 0.05 1.37 5.58 86.31 0.48 1.85 16 18 C 0.06 1.35 5.62 86.31 0.49 1.84 16 19 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 20 H 0.08 1.07 8.13 -2.39 -0.02 1.05 16 21 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 22 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 23 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.08 2.53 5.99 -2.39 -0.01 2.51 16 26 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 27 H 0.02 0.86 8.08 -2.39 -0.02 0.84 16 28 H 0.05 2.28 6.26 -2.38 -0.01 2.26 16 29 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 30 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 31 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 32 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 33 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.10 1.67 8.13 -2.39 -0.02 1.65 16 Total: -1.00 -64.86 284.91 -1.08 -65.94 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: 1.01 Total: 4.48 kcal Atomic # 6 Polarization: -25.77 SS G_CDS: 4.54 Total: -21.23 kcal Atomic # 7 Polarization: -87.35 SS G_CDS: -8.65 Total: -96.00 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -64.86 -1.08 -65.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042221665.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.999 kcal (2) G-P(sol) polarization free energy of solvation -64.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds