Wall clock time and date at job start Sun Mar 29 2020 21:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46902 * 110.99924 * 2 1 4 4 C 1.46906 * 110.99755 * 123.94591 * 2 1 3 5 5 C 1.53002 * 109.46677 * 170.00158 * 4 2 1 6 6 C 1.53040 * 109.46357 * 295.02761 * 5 4 2 7 7 C 1.53187 * 109.31714 * 178.60424 * 6 5 4 8 8 N 1.46930 * 108.76436 * 54.65343 * 7 6 5 9 9 C 1.36932 * 120.62778 * 126.40713 * 8 7 6 10 10 H 1.07999 * 120.00282 * 331.83000 * 9 8 7 11 11 C 1.38823 * 119.99826 * 151.82532 * 9 8 7 12 12 N 1.31621 * 119.99835 * 343.07629 * 11 9 8 13 13 Si 1.86797 * 119.99803 * 163.07172 * 11 9 8 14 14 H 1.48508 * 109.46981 * 90.00549 * 13 11 9 15 15 H 1.48495 * 109.47170 * 209.99876 * 13 11 9 16 16 H 1.48499 * 109.47405 * 330.00467 * 13 11 9 17 17 C 1.46925 * 118.74101 * 306.38829 * 8 7 6 18 18 C 1.53049 * 109.45797 * 174.97357 * 5 4 2 19 19 H 1.08995 * 109.46883 * 56.05538 * 1 2 3 20 20 H 1.08997 * 109.47420 * 296.04945 * 1 2 3 21 21 H 1.09003 * 109.46717 * 176.04903 * 1 2 3 22 22 H 1.08997 * 109.47461 * 59.99338 * 3 2 1 23 23 H 1.08998 * 109.46676 * 180.02562 * 3 2 1 24 24 H 1.09009 * 109.46490 * 299.99479 * 3 2 1 25 25 H 1.08995 * 109.47157 * 289.99935 * 4 2 1 26 26 H 1.08999 * 109.47104 * 50.00673 * 4 2 1 27 27 H 1.08995 * 109.46123 * 55.00557 * 5 4 2 28 28 H 1.09002 * 109.49788 * 298.56998 * 6 5 4 29 29 H 1.09005 * 109.49651 * 58.66422 * 6 5 4 30 30 H 1.09003 * 109.59903 * 294.87325 * 7 6 5 31 31 H 1.09000 * 109.70666 * 174.50741 * 7 6 5 32 32 H 0.96995 * 119.99649 * 179.97438 * 12 11 9 33 33 H 1.09006 * 109.58381 * 293.82268 * 17 8 7 34 34 H 1.08997 * 109.70625 * 173.46758 * 17 8 7 35 35 H 1.08999 * 109.49468 * 301.34119 * 18 5 4 36 36 H 1.09007 * 109.49089 * 61.40267 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1378 5 6 3.5044 -0.9552 0.9705 6 6 3.7763 -1.8210 -0.2618 7 6 5.2887 -1.9795 -0.4461 8 7 5.8641 -2.5053 0.7993 9 6 6.6426 -3.6318 0.7871 10 1 6.4924 -4.3838 0.0266 11 6 7.6249 -3.8072 1.7522 12 7 8.0398 -2.7801 2.4631 13 14 8.3578 -5.5008 2.0419 14 1 9.5394 -5.6860 1.1616 15 1 8.7744 -5.6236 3.4619 16 1 7.3423 -6.5392 1.7323 17 6 5.5888 -1.7993 2.0581 18 6 4.0730 -1.6426 2.2142 19 1 -0.3633 0.5738 -0.8525 20 1 -0.3634 0.4513 0.9232 21 1 -0.3633 -1.0253 -0.0708 22 1 1.6459 1.8949 0.8899 23 1 3.0850 1.3423 -0.0005 24 1 1.6459 1.8947 -0.8901 25 1 1.7975 -0.2245 2.0628 26 1 1.5090 -1.7406 1.1758 27 1 3.9805 0.0170 0.8434 28 1 3.3215 -2.8021 -0.1246 29 1 3.3506 -1.3424 -1.1438 30 1 5.7329 -1.0103 -0.6731 31 1 5.4888 -2.6734 -1.2626 32 1 8.7259 -2.9028 3.1376 33 1 6.0574 -0.8154 2.0352 34 1 5.9850 -2.3733 2.8957 35 1 3.8585 -1.0369 3.0946 36 1 3.6149 -2.6252 2.3280 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042393503.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:48 Heat of formation + Delta-G solvation = 16.399305 kcal Electronic energy + Delta-G solvation = -14859.545090 eV Core-core repulsion = 12571.943292 eV Total energy + Delta-G solvation = -2287.601798 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.38945 -36.33940 -33.10520 -30.73975 -29.60652 -27.53583 -27.07739 -24.34250 -22.38938 -21.79623 -20.28379 -18.90701 -16.68271 -15.22645 -15.10544 -14.89183 -14.54419 -13.73253 -13.39802 -13.25045 -12.89817 -12.38162 -12.32785 -11.95794 -11.65305 -11.61531 -11.33937 -11.12924 -10.84096 -10.61567 -10.34892 -10.08287 -9.99803 -9.72658 -9.37490 -9.26067 -8.38746 -8.20311 -6.55728 -5.70919 -3.12317 3.41794 3.48457 3.51475 4.10097 4.56779 5.13051 5.21996 5.35676 5.42943 5.46361 5.60575 5.60818 5.71092 5.79815 5.83471 5.95658 6.03761 6.07181 6.29802 6.31627 6.51241 6.72443 6.76696 6.86312 6.97683 7.00462 7.13088 7.16418 7.24116 7.48363 7.74910 7.87112 8.54315 9.30534 9.94951 10.52621 11.37616 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.065682 B = 0.006950 C = 0.006851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.194554 B = 4028.078266 C = 4085.888814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.544 5.544 3 C 0.022 3.978 4 C 0.060 3.940 5 C -0.075 4.075 6 C -0.116 4.116 7 C 0.144 3.856 8 N -0.594 5.594 9 C -0.248 4.248 10 H 0.064 0.936 11 C -0.001 4.001 12 N -0.905 5.905 13 Si 0.901 3.099 14 H -0.287 1.287 15 H -0.290 1.290 16 H -0.280 1.280 17 C 0.173 3.827 18 C -0.136 4.136 19 H 0.063 0.937 20 H 0.020 0.980 21 H 0.065 0.935 22 H 0.020 0.980 23 H 0.075 0.925 24 H 0.063 0.937 25 H 0.027 0.973 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.013 0.987 31 H 0.050 0.950 32 H 0.252 0.748 33 H 0.015 0.985 34 H 0.085 0.915 35 H 0.044 0.956 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.225 5.634 -2.530 13.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.268 5.268 3 C -0.126 4.126 4 C -0.068 4.068 5 C -0.094 4.094 6 C -0.155 4.155 7 C 0.018 3.982 8 N -0.317 5.317 9 C -0.378 4.378 10 H 0.082 0.918 11 C -0.199 4.199 12 N -0.550 5.550 13 Si 0.730 3.270 14 H -0.215 1.215 15 H -0.216 1.216 16 H -0.205 1.205 17 C 0.047 3.953 18 C -0.176 4.176 19 H 0.082 0.918 20 H 0.038 0.962 21 H 0.084 0.916 22 H 0.039 0.961 23 H 0.093 0.907 24 H 0.081 0.919 25 H 0.045 0.955 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.031 0.969 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.033 0.967 34 H 0.103 0.897 35 H 0.062 0.938 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.935 5.396 -2.841 13.403 hybrid contribution 0.114 -0.376 1.011 1.084 sum -11.821 5.020 -1.830 12.972 Atomic orbital electron populations 1.22356 0.88088 1.01944 0.99900 1.61971 1.07038 1.13728 1.44013 1.22429 1.01588 0.88751 0.99857 1.22308 0.96999 0.97381 0.90110 1.21078 0.92268 0.99185 0.96851 1.21906 0.98288 0.98618 0.96727 1.20943 0.91083 0.96367 0.89855 1.44066 1.57033 1.29704 1.00859 1.19198 1.09955 0.95242 1.13384 0.91834 1.25036 0.96633 0.97155 1.01033 1.70038 1.30768 1.28145 1.26067 0.86324 0.79025 0.84447 0.77162 1.21456 1.21634 1.20540 1.20718 0.88456 0.95608 0.90487 1.22229 1.00941 0.99149 0.95250 0.91772 0.96165 0.91570 0.96122 0.90662 0.91865 0.95501 0.91169 0.91991 0.93004 0.92204 0.96879 0.93156 0.93770 0.96733 0.89674 0.93772 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.57 60.07 0.57 0.86 16 2 N -0.54 -7.37 4.45 -251.25 -1.12 -8.49 16 3 C 0.02 0.27 9.41 60.07 0.57 0.83 16 4 C 0.06 0.88 4.35 -3.82 -0.02 0.87 16 5 C -0.07 -1.31 2.08 -90.57 -0.19 -1.50 16 6 C -0.12 -2.17 5.26 -26.61 -0.14 -2.31 16 7 C 0.14 3.19 6.52 -3.71 -0.02 3.16 16 8 N -0.59 -15.48 2.99 -172.32 -0.52 -16.00 16 9 C -0.25 -7.03 9.58 -15.06 -0.14 -7.18 16 10 H 0.06 1.77 7.88 -52.49 -0.41 1.36 16 11 C 0.00 -0.02 4.92 -17.43 -0.09 -0.10 16 12 N -0.91 -26.92 11.19 55.49 0.62 -26.30 16 13 Si 0.90 22.12 29.59 -169.99 -5.03 17.09 16 14 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 15 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 C 0.17 4.27 5.30 -3.71 -0.02 4.25 16 18 C -0.14 -2.68 5.36 -26.61 -0.14 -2.82 16 19 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 20 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 21 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 22 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 23 H 0.07 1.00 6.21 -51.93 -0.32 0.68 16 24 H 0.06 0.68 8.14 -51.92 -0.42 0.25 16 25 H 0.03 0.39 8.12 -51.93 -0.42 -0.04 16 26 H 0.07 1.04 8.06 -51.93 -0.42 0.62 16 27 H 0.06 1.12 6.26 -51.93 -0.33 0.79 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 1.04 7.72 -51.93 -0.40 0.64 16 30 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.05 1.10 7.93 -51.93 -0.41 0.69 16 32 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 33 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.09 2.34 6.07 -51.93 -0.31 2.02 16 35 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.05 1.09 8.14 -51.92 -0.42 0.67 16 LS Contribution 279.84 15.07 4.22 4.22 Total: -1.00 -29.89 279.84 -7.84 -37.72 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: -6.39 Total: -4.31 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: 0.38 Total: -3.94 kcal Atomic # 7 Polarization: -49.77 SS G_CDS: -1.01 Total: -50.78 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.03 Total: 17.09 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -29.89 -7.84 -37.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042393503.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.124 kcal (2) G-P(sol) polarization free energy of solvation -29.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds