Wall clock time and date at job start Sun Mar 29 2020 21:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46902 * 110.99924 * 2 1 4 4 C 1.46906 * 110.99755 * 123.94591 * 2 1 3 5 5 C 1.53002 * 109.46677 * 170.00158 * 4 2 1 6 6 C 1.53040 * 109.46357 * 295.02761 * 5 4 2 7 7 C 1.53187 * 109.31714 * 178.60424 * 6 5 4 8 8 N 1.46930 * 108.76436 * 54.65343 * 7 6 5 9 9 C 1.36932 * 120.62778 * 126.40713 * 8 7 6 10 10 H 1.07999 * 120.00282 * 331.83000 * 9 8 7 11 11 C 1.38823 * 119.99826 * 151.82532 * 9 8 7 12 12 N 1.31621 * 119.99835 * 343.07629 * 11 9 8 13 13 Si 1.86797 * 119.99803 * 163.07172 * 11 9 8 14 14 H 1.48508 * 109.46981 * 90.00549 * 13 11 9 15 15 H 1.48495 * 109.47170 * 209.99876 * 13 11 9 16 16 H 1.48499 * 109.47405 * 330.00467 * 13 11 9 17 17 C 1.46925 * 118.74101 * 306.38829 * 8 7 6 18 18 C 1.53049 * 109.45797 * 174.97357 * 5 4 2 19 19 H 1.08995 * 109.46883 * 56.05538 * 1 2 3 20 20 H 1.08997 * 109.47420 * 296.04945 * 1 2 3 21 21 H 1.09003 * 109.46717 * 176.04903 * 1 2 3 22 22 H 1.08997 * 109.47461 * 59.99338 * 3 2 1 23 23 H 1.08998 * 109.46676 * 180.02562 * 3 2 1 24 24 H 1.09009 * 109.46490 * 299.99479 * 3 2 1 25 25 H 1.08995 * 109.47157 * 289.99935 * 4 2 1 26 26 H 1.08999 * 109.47104 * 50.00673 * 4 2 1 27 27 H 1.08995 * 109.46123 * 55.00557 * 5 4 2 28 28 H 1.09002 * 109.49788 * 298.56998 * 6 5 4 29 29 H 1.09005 * 109.49651 * 58.66422 * 6 5 4 30 30 H 1.09003 * 109.59903 * 294.87325 * 7 6 5 31 31 H 1.09000 * 109.70666 * 174.50741 * 7 6 5 32 32 H 0.96995 * 119.99649 * 179.97438 * 12 11 9 33 33 H 1.09006 * 109.58381 * 293.82268 * 17 8 7 34 34 H 1.08997 * 109.70625 * 173.46758 * 17 8 7 35 35 H 1.08999 * 109.49468 * 301.34119 * 18 5 4 36 36 H 1.09007 * 109.49089 * 61.40267 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1378 5 6 3.5044 -0.9552 0.9705 6 6 3.7763 -1.8210 -0.2618 7 6 5.2887 -1.9795 -0.4461 8 7 5.8641 -2.5053 0.7993 9 6 6.6426 -3.6318 0.7871 10 1 6.4924 -4.3838 0.0266 11 6 7.6249 -3.8072 1.7522 12 7 8.0398 -2.7801 2.4631 13 14 8.3578 -5.5008 2.0419 14 1 9.5394 -5.6860 1.1616 15 1 8.7744 -5.6236 3.4619 16 1 7.3423 -6.5392 1.7323 17 6 5.5888 -1.7993 2.0581 18 6 4.0730 -1.6426 2.2142 19 1 -0.3633 0.5738 -0.8525 20 1 -0.3634 0.4513 0.9232 21 1 -0.3633 -1.0253 -0.0708 22 1 1.6459 1.8949 0.8899 23 1 3.0850 1.3423 -0.0005 24 1 1.6459 1.8947 -0.8901 25 1 1.7975 -0.2245 2.0628 26 1 1.5090 -1.7406 1.1758 27 1 3.9805 0.0170 0.8434 28 1 3.3215 -2.8021 -0.1246 29 1 3.3506 -1.3424 -1.1438 30 1 5.7329 -1.0103 -0.6731 31 1 5.4888 -2.6734 -1.2626 32 1 8.7259 -2.9028 3.1376 33 1 6.0574 -0.8154 2.0352 34 1 5.9850 -2.3733 2.8957 35 1 3.8585 -1.0369 3.0946 36 1 3.6149 -2.6252 2.3280 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042393503.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:47 Heat of formation + Delta-G solvation = -2.328688 kcal Electronic energy + Delta-G solvation = -14860.357197 eV Core-core repulsion = 12571.943292 eV Total energy + Delta-G solvation = -2288.413905 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.82159 -37.77809 -34.92474 -32.61061 -31.39422 -28.65773 -28.42608 -26.08652 -23.95141 -23.42536 -21.73354 -20.54299 -18.69272 -16.85452 -16.34357 -16.12786 -15.96612 -15.34997 -15.28023 -14.80476 -14.51730 -13.93382 -13.71592 -13.23416 -13.01452 -12.87556 -12.82023 -12.57338 -12.51239 -12.34157 -12.23046 -11.93334 -11.78742 -11.32454 -11.05147 -11.00073 -10.52476 -9.20663 -8.65384 -7.86238 -5.31683 1.46562 1.47766 1.58219 2.52373 3.09114 3.27976 3.74653 3.90317 4.11542 4.23401 4.34746 4.49522 4.57916 4.59782 4.66071 4.72726 4.80304 4.81735 4.87798 4.99024 5.05056 5.05582 5.09340 5.34209 5.37493 5.40716 5.46071 5.56630 5.67354 5.79092 6.13965 6.21069 6.40911 7.16450 7.88675 8.40990 9.20124 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.065682 B = 0.006950 C = 0.006851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.194554 B = 4028.078266 C = 4085.888814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.558 5.558 3 C 0.022 3.978 4 C 0.071 3.929 5 C -0.069 4.069 6 C -0.100 4.100 7 C 0.139 3.861 8 N -0.612 5.612 9 C -0.264 4.264 10 H 0.064 0.936 11 C -0.053 4.053 12 N -0.937 5.937 13 Si 0.968 3.032 14 H -0.284 1.284 15 H -0.291 1.291 16 H -0.271 1.271 17 C 0.178 3.822 18 C -0.123 4.123 19 H 0.078 0.922 20 H 0.027 0.973 21 H 0.069 0.931 22 H 0.027 0.973 23 H 0.060 0.940 24 H 0.079 0.921 25 H 0.034 0.966 26 H 0.072 0.928 27 H 0.058 0.942 28 H 0.046 0.954 29 H 0.078 0.922 30 H 0.008 0.992 31 H 0.048 0.952 32 H 0.250 0.750 33 H -0.008 1.008 34 H 0.051 0.949 35 H 0.064 0.936 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.967 5.594 -2.992 15.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.282 5.282 3 C -0.126 4.126 4 C -0.057 4.057 5 C -0.087 4.087 6 C -0.139 4.139 7 C 0.014 3.986 8 N -0.336 5.336 9 C -0.394 4.394 10 H 0.082 0.918 11 C -0.248 4.248 12 N -0.584 5.584 13 Si 0.796 3.204 14 H -0.210 1.210 15 H -0.217 1.217 16 H -0.195 1.195 17 C 0.053 3.947 18 C -0.163 4.163 19 H 0.097 0.903 20 H 0.045 0.955 21 H 0.088 0.912 22 H 0.046 0.954 23 H 0.079 0.921 24 H 0.098 0.902 25 H 0.053 0.947 26 H 0.091 0.909 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.097 0.903 30 H 0.026 0.974 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.010 0.990 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.707 5.365 -3.326 15.090 hybrid contribution 0.665 -0.309 1.100 1.322 sum -13.041 5.056 -2.226 14.163 Atomic orbital electron populations 1.22407 0.86275 1.02607 1.00917 1.61939 1.08734 1.14272 1.43254 1.22440 1.00693 0.88426 1.01034 1.22078 0.94467 0.98061 0.91132 1.20972 0.94578 0.98257 0.94938 1.21718 0.95217 0.98801 0.98130 1.21101 0.93367 0.95736 0.88405 1.44353 1.57215 1.29596 1.02456 1.19533 1.10222 0.96174 1.13482 0.91806 1.25825 0.97295 1.00673 1.00967 1.70197 1.31408 1.30132 1.26635 0.85267 0.78263 0.80146 0.76726 1.21028 1.21716 1.19542 1.20550 0.91621 0.93488 0.89068 1.22026 0.97015 0.99760 0.97464 0.90319 0.95475 0.91222 0.95421 0.92121 0.90236 0.94733 0.90913 0.92387 0.93502 0.90343 0.97414 0.93317 0.94116 0.99010 0.93020 0.91738 0.93111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 9.57 127.69 1.22 1.70 16 2 N -0.56 -13.44 4.45 -948.83 -4.22 -17.66 16 3 C 0.02 0.48 9.41 127.69 1.20 1.68 16 4 C 0.07 1.90 4.35 86.30 0.38 2.27 16 5 C -0.07 -2.29 2.08 -10.76 -0.02 -2.32 16 6 C -0.10 -3.58 5.26 30.67 0.16 -3.41 16 7 C 0.14 6.16 6.52 86.36 0.56 6.72 16 8 N -0.61 -32.40 2.99 -699.09 -2.09 -34.49 16 9 C -0.26 -15.14 9.58 84.04 0.81 -14.34 16 10 H 0.06 3.58 7.88 -2.91 -0.02 3.55 16 11 C -0.05 -3.03 4.92 84.86 0.42 -2.61 16 12 N -0.94 -57.12 11.19 21.66 0.24 -56.87 16 13 Si 0.97 45.93 29.59 68.60 2.03 47.96 16 14 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 15 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 16 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 17 C 0.18 8.99 5.30 86.36 0.46 9.45 16 18 C -0.12 -4.77 5.36 30.67 0.16 -4.60 16 19 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 20 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 21 H 0.07 1.25 8.12 -2.39 -0.02 1.23 16 22 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 23 H 0.06 1.50 6.21 -2.39 -0.01 1.48 16 24 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 25 H 0.03 0.89 8.12 -2.39 -0.02 0.87 16 26 H 0.07 1.94 8.06 -2.39 -0.02 1.92 16 27 H 0.06 2.01 6.26 -2.39 -0.01 2.00 16 28 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.08 2.54 7.72 -2.38 -0.02 2.52 16 30 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.05 2.12 7.93 -2.39 -0.02 2.10 16 32 H 0.25 14.66 8.31 -92.71 -0.77 13.88 16 33 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 34 H 0.05 2.93 6.07 -2.39 -0.01 2.91 16 35 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 Total: -1.00 -64.04 279.84 2.32 -61.73 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: 1.01 Total: 4.79 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: 5.34 Total: -5.46 kcal Atomic # 7 Polarization: -102.95 SS G_CDS: -6.07 Total: -109.02 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -64.04 2.32 -61.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042393503.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.397 kcal (2) G-P(sol) polarization free energy of solvation -64.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds