Wall clock time and date at job start Sun Mar 29 2020 22:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86798 * 119.99998 * 2 1 4 4 H 1.48494 * 109.47166 * 240.00012 * 3 2 1 5 5 H 1.48503 * 109.47127 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47261 * 119.99738 * 3 2 1 7 7 C 1.40054 * 119.99865 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99815 * 179.97438 * 7 2 1 9 9 C 1.46366 * 120.00178 * 0.02562 * 7 2 1 10 10 O 1.21695 * 120.00271 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00136 * 179.97438 * 9 7 2 12 12 C 1.46497 * 120.00243 * 179.97438 * 11 9 7 13 13 C 1.53000 * 109.47406 * 179.97438 * 12 11 9 14 14 H 1.08998 * 109.48089 * 304.98209 * 13 12 11 15 15 C 1.53090 * 109.48304 * 184.94150 * 13 12 11 16 16 C 1.53176 * 109.16668 * 182.40914 * 15 13 12 17 17 C 1.53181 * 109.03564 * 56.97896 * 16 15 13 18 18 C 1.53096 * 109.16280 * 303.02405 * 17 16 15 19 19 O 1.42902 * 109.47734 * 65.00204 * 13 12 11 20 20 H 0.96995 * 120.00290 * 359.97438 * 1 2 3 21 21 H 0.96998 * 119.99711 * 359.97438 * 11 9 7 22 22 H 1.08999 * 109.47439 * 59.99594 * 12 11 9 23 23 H 1.09004 * 109.47075 * 300.00018 * 12 11 9 24 24 H 1.09005 * 109.52564 * 302.31806 * 15 13 12 25 25 H 1.09001 * 109.51975 * 62.50094 * 15 13 12 26 26 H 1.09005 * 109.54225 * 297.11519 * 16 15 13 27 27 H 1.08991 * 109.54673 * 176.84737 * 16 15 13 28 28 H 1.08998 * 109.52547 * 183.11606 * 17 16 15 29 29 H 1.09004 * 109.52249 * 62.92485 * 17 16 15 30 30 H 1.08996 * 109.47593 * 177.59033 * 18 17 16 31 31 H 1.09001 * 109.48107 * 297.61277 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0944 1.6964 -1.2124 5 1 1.2757 2.7465 -0.0006 6 1 3.0944 1.6964 1.2125 7 6 2.0070 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4806 0.0005 11 7 1.9490 -3.6477 0.0005 12 6 1.2165 -4.9164 0.0011 13 6 2.2108 -6.0794 0.0003 14 1 2.8941 -5.9728 -0.8421 15 6 1.4495 -7.4018 -0.1234 16 6 2.4462 -8.5634 -0.0629 17 6 3.2426 -8.4709 1.2424 18 6 3.9345 -7.1071 1.3134 19 8 2.9541 -6.0716 1.2208 20 1 -0.4850 0.8400 0.0004 21 1 2.9190 -3.6477 0.0002 22 1 0.5895 -4.9744 -0.8886 23 1 0.5902 -4.9740 0.8914 24 1 0.7370 -7.4902 0.6968 25 1 0.9170 -7.4279 -1.0741 26 1 3.1282 -8.5032 -0.9111 27 1 1.9060 -9.5095 -0.0941 28 1 3.9923 -9.2616 1.2685 29 1 2.5663 -8.5808 2.0902 30 1 4.4680 -7.0191 2.2598 31 1 4.6406 -7.0143 0.4881 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042824290.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:14 Heat of formation + Delta-G solvation = -104.137652 kcal Electronic energy + Delta-G solvation = -14236.126047 eV Core-core repulsion = 11709.745617 eV Total energy + Delta-G solvation = -2526.380430 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.33798 -37.02445 -33.66324 -33.50098 -32.29884 -30.77403 -27.15325 -25.51684 -23.91734 -21.84767 -20.29963 -19.44198 -17.20972 -16.22197 -15.78899 -15.20749 -14.83187 -14.51245 -14.16180 -13.83451 -13.15709 -12.96830 -12.62677 -12.22345 -11.90898 -11.39702 -11.25979 -11.08502 -11.05604 -10.80126 -10.61984 -10.38459 -10.22545 -10.07847 -9.32215 -8.78003 -7.53902 -7.38799 -6.11373 -4.56237 3.20756 3.24961 3.27306 3.93242 4.16342 4.65491 4.66902 4.76880 4.84888 4.92331 5.24784 5.29631 5.44646 5.49844 5.65634 5.72013 5.81129 5.85857 5.91101 5.98739 6.07988 6.24693 6.44318 6.60954 7.44054 7.50304 8.03265 8.19508 8.41454 9.09528 9.64102 10.68010 10.87007 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.064710 B = 0.006237 C = 0.005838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.596841 B = 4488.534803 C = 4794.973847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.088 3.912 3 Si 0.908 3.092 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.545 4.545 8 H 0.067 0.933 9 C 0.555 3.445 10 O -0.584 6.584 11 N -0.763 5.763 12 C 0.142 3.858 13 C 0.082 3.918 14 H 0.059 0.941 15 C -0.149 4.149 16 C -0.121 4.121 17 C -0.157 4.157 18 C 0.059 3.941 19 O -0.369 6.369 20 H 0.268 0.732 21 H 0.382 0.618 22 H 0.062 0.938 23 H 0.055 0.945 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.443 -13.790 0.076 15.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.582 4.582 8 H 0.085 0.915 9 C 0.359 3.641 10 O -0.467 6.467 11 N -0.418 5.418 12 C 0.017 3.983 13 C 0.024 3.976 14 H 0.077 0.923 15 C -0.187 4.187 16 C -0.158 4.158 17 C -0.194 4.194 18 C -0.018 4.018 19 O -0.288 6.288 20 H 0.079 0.921 21 H 0.214 0.786 22 H 0.080 0.920 23 H 0.073 0.927 24 H 0.092 0.908 25 H 0.093 0.907 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.108 0.892 31 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.308 -13.547 0.220 14.945 hybrid contribution 1.006 0.458 -0.185 1.121 sum 7.313 -13.090 0.035 14.994 Atomic orbital electron populations 1.70016 1.07052 1.27247 1.35576 1.25706 0.94601 1.00231 0.92647 0.86437 0.79800 0.81089 0.79401 1.19342 1.20602 1.19299 1.20855 0.93551 0.89451 1.54385 0.91510 1.18204 0.87176 0.82482 0.76264 1.90590 1.14119 1.86955 1.55059 1.46020 1.08669 1.04598 1.82556 1.20891 0.93109 0.83102 1.01228 1.22427 0.93366 0.94848 0.86996 0.92316 1.22151 0.98727 0.94633 1.03202 1.21577 0.98185 0.98545 0.97533 1.22202 1.00265 0.98250 0.98716 1.22530 0.90610 0.86872 1.01796 1.88066 1.51181 1.50996 1.38579 0.92137 0.78645 0.92036 0.92662 0.90781 0.90676 0.91959 0.91655 0.91297 0.91102 0.89157 0.93504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.73 11.83 55.55 0.66 -23.07 16 2 C 0.09 2.52 5.50 -17.36 -0.10 2.42 16 3 Si 0.91 20.64 29.56 -169.99 -5.02 15.62 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.55 -15.98 9.54 -35.63 -0.34 -16.32 16 8 H 0.07 1.79 7.85 -52.49 -0.41 1.38 16 9 C 0.55 16.52 7.75 -12.99 -0.10 16.42 16 10 O -0.58 -19.62 15.02 5.19 0.08 -19.54 16 11 N -0.76 -18.20 5.50 -61.72 -0.34 -18.54 16 12 C 0.14 2.89 5.34 -4.04 -0.02 2.87 16 13 C 0.08 1.27 2.68 -26.68 -0.07 1.20 16 14 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 15 C -0.15 -1.87 5.42 -26.59 -0.14 -2.01 16 16 C -0.12 -1.23 6.03 -26.55 -0.16 -1.39 16 17 C -0.16 -1.58 6.14 -26.59 -0.16 -1.74 16 18 C 0.06 0.70 6.84 37.21 0.25 0.95 16 19 O -0.37 -5.99 10.35 -35.23 -0.36 -6.36 16 20 H 0.27 7.48 8.29 -40.82 -0.34 7.14 16 21 H 0.38 8.23 8.45 -40.82 -0.35 7.89 16 22 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 23 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 24 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 25 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 262.96 15.07 3.96 3.96 Total: -1.00 -35.09 262.96 -6.41 -41.51 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -4.54 Total: 4.03 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -0.84 Total: 2.39 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: 0.32 Total: -41.62 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.29 Total: -25.90 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -35.09 -6.41 -41.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042824290.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.629 kcal (2) G-P(sol) polarization free energy of solvation -35.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds