Wall clock time and date at job start Sun Mar 29 2020 22:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86798 * 119.99998 * 2 1 4 4 H 1.48494 * 109.47166 * 240.00012 * 3 2 1 5 5 H 1.48503 * 109.47127 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47261 * 119.99738 * 3 2 1 7 7 C 1.40054 * 119.99865 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99815 * 179.97438 * 7 2 1 9 9 C 1.46366 * 120.00178 * 0.02562 * 7 2 1 10 10 O 1.21695 * 120.00271 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00136 * 179.97438 * 9 7 2 12 12 C 1.46497 * 120.00243 * 179.97438 * 11 9 7 13 13 C 1.53000 * 109.47406 * 179.97438 * 12 11 9 14 14 H 1.08998 * 109.48089 * 304.98209 * 13 12 11 15 15 C 1.53090 * 109.48304 * 184.94150 * 13 12 11 16 16 C 1.53176 * 109.16668 * 182.40914 * 15 13 12 17 17 C 1.53181 * 109.03564 * 56.97896 * 16 15 13 18 18 C 1.53096 * 109.16280 * 303.02405 * 17 16 15 19 19 O 1.42902 * 109.47734 * 65.00204 * 13 12 11 20 20 H 0.96995 * 120.00290 * 359.97438 * 1 2 3 21 21 H 0.96998 * 119.99711 * 359.97438 * 11 9 7 22 22 H 1.08999 * 109.47439 * 59.99594 * 12 11 9 23 23 H 1.09004 * 109.47075 * 300.00018 * 12 11 9 24 24 H 1.09005 * 109.52564 * 302.31806 * 15 13 12 25 25 H 1.09001 * 109.51975 * 62.50094 * 15 13 12 26 26 H 1.09005 * 109.54225 * 297.11519 * 16 15 13 27 27 H 1.08991 * 109.54673 * 176.84737 * 16 15 13 28 28 H 1.08998 * 109.52547 * 183.11606 * 17 16 15 29 29 H 1.09004 * 109.52249 * 62.92485 * 17 16 15 30 30 H 1.08996 * 109.47593 * 177.59033 * 18 17 16 31 31 H 1.09001 * 109.48107 * 297.61277 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0944 1.6964 -1.2124 5 1 1.2757 2.7465 -0.0006 6 1 3.0944 1.6964 1.2125 7 6 2.0070 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4806 0.0005 11 7 1.9490 -3.6477 0.0005 12 6 1.2165 -4.9164 0.0011 13 6 2.2108 -6.0794 0.0003 14 1 2.8941 -5.9728 -0.8421 15 6 1.4495 -7.4018 -0.1234 16 6 2.4462 -8.5634 -0.0629 17 6 3.2426 -8.4709 1.2424 18 6 3.9345 -7.1071 1.3134 19 8 2.9541 -6.0716 1.2208 20 1 -0.4850 0.8400 0.0004 21 1 2.9190 -3.6477 0.0002 22 1 0.5895 -4.9744 -0.8886 23 1 0.5902 -4.9740 0.8914 24 1 0.7370 -7.4902 0.6968 25 1 0.9170 -7.4279 -1.0741 26 1 3.1282 -8.5032 -0.9111 27 1 1.9060 -9.5095 -0.0941 28 1 3.9923 -9.2616 1.2685 29 1 2.5663 -8.5808 2.0902 30 1 4.4680 -7.0191 2.2598 31 1 4.6406 -7.0143 0.4881 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042824290.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:14 Heat of formation + Delta-G solvation = -130.929102 kcal Electronic energy + Delta-G solvation = -14237.287811 eV Core-core repulsion = 11709.745617 eV Total energy + Delta-G solvation = -2527.542194 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.51931 -39.14284 -35.44811 -34.55320 -34.47947 -32.24686 -28.98748 -27.19058 -24.98855 -23.21202 -21.78211 -21.05549 -19.25704 -17.50758 -17.40853 -16.82225 -16.39881 -15.88709 -15.37868 -15.28364 -15.01637 -14.50565 -13.90227 -13.60217 -13.39305 -13.18849 -12.94451 -12.68022 -12.60624 -12.20485 -12.04857 -11.95718 -11.59787 -11.21540 -10.91553 -10.40364 -9.87389 -9.48679 -8.28817 -6.85923 1.40538 1.44778 1.56523 2.25947 2.46828 2.79730 3.09481 3.62328 3.79364 3.93969 3.97068 4.09843 4.17751 4.31244 4.51762 4.67662 4.70082 4.81685 4.90691 4.95804 5.08132 5.13680 5.21136 5.31643 5.40478 5.87364 6.21292 6.25713 6.35942 6.86284 7.54376 8.48541 8.67393 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.064710 B = 0.006237 C = 0.005838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.596841 B = 4488.534803 C = 4794.973847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.027 3.973 3 Si 1.002 2.998 4 H -0.253 1.253 5 H -0.273 1.273 6 H -0.255 1.255 7 C -0.575 4.575 8 H 0.087 0.913 9 C 0.535 3.465 10 O -0.635 6.635 11 N -0.751 5.751 12 C 0.140 3.860 13 C 0.093 3.907 14 H 0.072 0.928 15 C -0.147 4.147 16 C -0.117 4.117 17 C -0.153 4.153 18 C 0.050 3.950 19 O -0.402 6.402 20 H 0.275 0.725 21 H 0.395 0.605 22 H 0.055 0.945 23 H 0.029 0.971 24 H 0.063 0.937 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.096 0.904 29 H 0.062 0.938 30 H 0.101 0.899 31 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.696 -14.244 -0.218 17.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.187 4.187 3 Si 0.821 3.179 4 H -0.176 1.176 5 H -0.197 1.197 6 H -0.179 1.179 7 C -0.612 4.612 8 H 0.105 0.895 9 C 0.339 3.661 10 O -0.523 6.523 11 N -0.405 5.405 12 C 0.016 3.984 13 C 0.036 3.964 14 H 0.090 0.910 15 C -0.185 4.185 16 C -0.154 4.154 17 C -0.191 4.191 18 C -0.026 4.026 19 O -0.322 6.322 20 H 0.085 0.915 21 H 0.228 0.772 22 H 0.074 0.926 23 H 0.048 0.952 24 H 0.082 0.918 25 H 0.102 0.898 26 H 0.092 0.908 27 H 0.102 0.898 28 H 0.115 0.885 29 H 0.081 0.919 30 H 0.119 0.881 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.612 -14.062 -0.073 16.489 hybrid contribution 0.310 0.522 -0.065 0.611 sum 8.921 -13.540 -0.139 16.215 Atomic orbital electron populations 1.70188 1.09618 1.29073 1.36395 1.27028 0.95562 1.05059 0.91098 0.85021 0.78160 0.74452 0.80313 1.17649 1.19737 1.17909 1.21413 0.94735 0.90121 1.54890 0.89497 1.18663 0.86868 0.84443 0.76102 1.90540 1.16196 1.88058 1.57504 1.45730 1.09272 1.04596 1.80929 1.21012 0.94192 0.83558 0.99680 1.22226 0.92779 0.93996 0.87435 0.91044 1.22141 0.99052 0.94021 1.03309 1.21589 0.97827 0.97941 0.98043 1.22189 1.00662 0.97854 0.98349 1.22823 0.90078 0.86746 1.02966 1.88004 1.52360 1.53151 1.38678 0.91501 0.77199 0.92639 0.95250 0.91825 0.89775 0.90755 0.89791 0.88544 0.91910 0.88108 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.93 11.83 21.84 0.26 -51.67 16 2 C 0.03 1.58 5.50 85.31 0.47 2.05 16 3 Si 1.00 41.95 29.56 68.60 2.03 43.98 16 4 H -0.25 -9.87 7.11 99.48 0.71 -9.16 16 5 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 6 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 7 C -0.58 -34.02 9.54 24.83 0.24 -33.78 16 8 H 0.09 4.61 7.85 -2.91 -0.02 4.58 16 9 C 0.53 32.85 7.75 86.36 0.67 33.52 16 10 O -0.64 -44.61 15.02 -4.33 -0.07 -44.68 16 11 N -0.75 -36.62 5.50 -467.41 -2.57 -39.19 16 12 C 0.14 5.89 5.34 86.38 0.46 6.35 16 13 C 0.09 2.85 2.68 30.62 0.08 2.93 16 14 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 15 C -0.15 -3.50 5.42 30.68 0.17 -3.34 16 16 C -0.12 -2.03 6.03 30.71 0.19 -1.84 16 17 C -0.15 -2.64 6.14 30.69 0.19 -2.45 16 18 C 0.05 1.07 6.84 72.01 0.49 1.57 16 19 O -0.40 -12.74 10.35 -148.98 -1.54 -14.28 16 20 H 0.28 15.66 8.29 -92.71 -0.77 14.90 16 21 H 0.39 17.04 8.45 -92.71 -0.78 16.26 16 22 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 23 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 24 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 25 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 27 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -78.52 262.96 1.39 -77.13 By element: Atomic # 1 Polarization: 23.39 SS G_CDS: 0.33 Total: 23.72 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: 2.95 Total: 4.99 kcal Atomic # 7 Polarization: -88.55 SS G_CDS: -2.31 Total: -90.86 kcal Atomic # 8 Polarization: -57.35 SS G_CDS: -1.61 Total: -58.96 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -78.52 1.39 -77.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042824290.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.798 kcal (2) G-P(sol) polarization free energy of solvation -78.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds