Wall clock time and date at job start Sun Mar 29 2020 22:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86800 * 120.00080 * 2 1 4 4 H 1.48498 * 109.46821 * 85.02154 * 3 2 1 5 5 H 1.48503 * 109.46804 * 205.01973 * 3 2 1 6 6 H 1.48497 * 109.47335 * 325.02349 * 3 2 1 7 7 C 1.40046 * 119.99507 * 179.72701 * 2 1 3 8 8 H 1.08000 * 119.99989 * 186.78898 * 7 2 1 9 9 C 1.46375 * 120.00291 * 6.79100 * 7 2 1 10 10 O 1.21683 * 119.99811 * 6.75130 * 9 7 2 11 11 N 1.34776 * 119.99864 * 186.74463 * 9 7 2 12 12 C 1.46506 * 119.99783 * 180.02562 * 11 9 7 13 13 C 1.53002 * 109.46844 * 180.02562 * 12 11 9 14 14 H 1.08996 * 109.48206 * 60.02396 * 13 12 11 15 15 C 1.53093 * 109.47631 * 180.02562 * 13 12 11 16 16 C 1.53178 * 109.16375 * 177.58932 * 15 13 12 17 17 C 1.53179 * 109.03607 * 303.02529 * 16 15 13 18 18 C 1.53086 * 109.16816 * 56.97449 * 17 16 15 19 19 O 1.42900 * 109.48081 * 299.99732 * 13 12 11 20 20 H 0.97000 * 119.99679 * 359.97438 * 1 2 3 21 21 H 0.97002 * 120.00485 * 0.02562 * 11 9 7 22 22 H 1.09001 * 109.47220 * 300.00514 * 12 11 9 23 23 H 1.08998 * 109.46909 * 60.00484 * 12 11 9 24 24 H 1.09000 * 109.52387 * 297.49955 * 15 13 12 25 25 H 1.09002 * 109.52584 * 57.68792 * 15 13 12 26 26 H 1.08999 * 109.54702 * 183.15206 * 16 15 13 27 27 H 1.08999 * 109.53973 * 62.88644 * 16 15 13 28 28 H 1.09001 * 109.51894 * 297.07118 * 17 16 15 29 29 H 1.09004 * 109.57249 * 176.91714 * 17 16 15 30 30 H 1.08995 * 109.48702 * 182.41109 * 18 17 16 31 31 H 1.09008 * 109.48947 * 62.38193 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.3830 2.1071 1.3948 5 1 3.5870 1.4120 -0.5922 6 1 1.4949 2.6200 -0.8025 7 6 2.0069 -1.2129 0.0058 8 1 3.0812 -1.2157 0.1164 9 6 1.2827 -2.4768 -0.1381 10 8 0.0912 -2.4705 -0.3853 11 7 1.9355 -3.6473 0.0031 12 6 1.2108 -4.9123 -0.1414 13 6 2.1772 -6.0803 0.0656 14 1 2.6094 -6.0218 1.0645 15 6 1.4202 -7.4023 -0.0860 16 6 2.4053 -8.5658 0.0627 17 6 3.5206 -8.4120 -0.9759 18 6 4.1965 -7.0510 -0.7900 19 8 3.2198 -6.0147 -0.9094 20 1 -0.4850 0.8401 0.0004 21 1 2.8853 -3.6524 0.2005 22 1 0.4158 -4.9627 0.6026 23 1 0.7780 -4.9710 -1.1401 24 1 0.6532 -7.4734 0.6852 25 1 0.9533 -7.4439 -1.0701 26 1 1.8832 -9.5087 -0.0997 27 1 2.8355 -8.5535 1.0641 28 1 3.0962 -8.4740 -1.9780 29 1 4.2561 -9.2053 -0.8422 30 1 4.9627 -6.9182 -1.5537 31 1 4.6557 -7.0050 0.1976 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042824293.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:16 Heat of formation + Delta-G solvation = -104.585361 kcal Electronic energy + Delta-G solvation = -14244.115859 eV Core-core repulsion = 11717.716015 eV Total energy + Delta-G solvation = -2526.399844 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.34045 -37.02449 -33.66714 -33.49343 -32.30688 -30.77351 -27.15509 -25.52601 -23.91201 -21.84654 -20.28717 -19.44806 -17.21090 -16.22126 -15.79648 -15.20003 -14.83080 -14.50794 -14.16668 -13.83355 -13.18894 -12.95277 -12.62562 -12.24253 -11.89674 -11.43098 -11.23145 -11.08138 -11.04829 -10.81959 -10.61990 -10.39333 -10.21907 -10.06448 -9.32122 -8.77679 -7.53450 -7.38621 -6.14732 -4.55147 3.18269 3.25527 3.30344 3.92664 4.16709 4.65809 4.66178 4.76803 4.84764 4.92614 5.24803 5.29583 5.45246 5.49889 5.65369 5.72006 5.81223 5.85275 5.90832 5.98660 6.08164 6.24496 6.44736 6.60255 7.43361 7.50654 8.04208 8.19899 8.42556 9.09814 9.64451 10.67426 10.86133 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.064295 B = 0.006287 C = 0.005845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.386027 B = 4452.452449 C = 4789.163971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.089 3.911 3 Si 0.907 3.093 4 H -0.274 1.274 5 H -0.264 1.264 6 H -0.279 1.279 7 C -0.546 4.546 8 H 0.068 0.932 9 C 0.557 3.443 10 O -0.586 6.586 11 N -0.762 5.762 12 C 0.142 3.858 13 C 0.082 3.918 14 H 0.059 0.941 15 C -0.149 4.149 16 C -0.121 4.121 17 C -0.157 4.157 18 C 0.059 3.941 19 O -0.369 6.369 20 H 0.268 0.732 21 H 0.383 0.617 22 H 0.062 0.938 23 H 0.054 0.946 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.352 -13.826 0.860 15.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.130 4.130 3 Si 0.732 3.268 4 H -0.199 1.199 5 H -0.188 1.188 6 H -0.204 1.204 7 C -0.583 4.583 8 H 0.086 0.914 9 C 0.361 3.639 10 O -0.470 6.470 11 N -0.417 5.417 12 C 0.017 3.983 13 C 0.024 3.976 14 H 0.077 0.923 15 C -0.187 4.187 16 C -0.158 4.158 17 C -0.194 4.194 18 C -0.018 4.018 19 O -0.288 6.288 20 H 0.078 0.922 21 H 0.215 0.785 22 H 0.080 0.920 23 H 0.072 0.928 24 H 0.093 0.907 25 H 0.092 0.908 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.109 0.891 31 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.283 -13.574 0.532 14.967 hybrid contribution 0.915 0.444 0.298 1.060 sum 7.198 -13.130 0.830 14.997 Atomic orbital electron populations 1.70003 1.07130 1.27233 1.35714 1.25692 0.94563 1.00253 0.92529 0.86375 0.80359 0.81550 0.78549 1.19910 1.18838 1.20424 1.20884 0.94211 0.89584 1.53658 0.91407 1.18205 0.86692 0.82449 0.76585 1.90578 1.15982 1.87002 1.53407 1.46006 1.11769 1.04557 1.79392 1.20904 0.93084 0.83186 1.01156 1.22426 0.88591 0.94867 0.91762 0.92334 1.22153 0.98583 0.94603 1.03378 1.21575 0.96731 0.98469 0.99059 1.22197 0.98686 0.98231 1.00314 1.22530 0.91096 0.86949 1.01227 1.88059 1.36744 1.49375 1.54611 0.92159 0.78532 0.92031 0.92774 0.90671 0.90788 0.91656 0.91959 0.91112 0.91296 0.89146 0.93508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.75 11.91 55.55 0.66 -23.09 16 2 C 0.09 2.56 5.48 -17.36 -0.10 2.46 16 3 Si 0.91 20.67 29.56 -169.99 -5.03 15.64 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.26 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 7 C -0.55 -16.04 9.53 -35.63 -0.34 -16.38 16 8 H 0.07 1.83 7.86 -52.49 -0.41 1.42 16 9 C 0.56 16.60 7.72 -12.99 -0.10 16.50 16 10 O -0.59 -19.70 15.11 5.20 0.08 -19.62 16 11 N -0.76 -18.22 5.44 -61.72 -0.34 -18.56 16 12 C 0.14 2.89 5.37 -4.04 -0.02 2.87 16 13 C 0.08 1.27 2.73 -26.68 -0.07 1.19 16 14 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 15 C -0.15 -1.87 5.42 -26.59 -0.14 -2.01 16 16 C -0.12 -1.23 6.03 -26.55 -0.16 -1.39 16 17 C -0.16 -1.57 6.14 -26.59 -0.16 -1.74 16 18 C 0.06 0.70 6.84 37.20 0.25 0.95 16 19 O -0.37 -5.97 10.15 -35.23 -0.36 -6.33 16 20 H 0.27 7.44 8.29 -40.82 -0.34 7.11 16 21 H 0.38 8.31 8.33 -40.82 -0.34 7.97 16 22 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 23 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 24 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.05 0.51 8.14 -51.92 -0.42 0.08 16 LS Contribution 262.79 15.07 3.96 3.96 Total: -1.00 -35.11 262.79 -6.40 -41.51 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -4.54 Total: 4.03 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -0.84 Total: 2.45 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: 0.33 Total: -41.65 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -0.28 Total: -25.94 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.64 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -35.11 -6.40 -41.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042824293.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.079 kcal (2) G-P(sol) polarization free energy of solvation -35.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds