Wall clock time and date at job start Sun Mar 29 2020 22:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86800 * 120.00080 * 2 1 4 4 H 1.48498 * 109.46821 * 85.02154 * 3 2 1 5 5 H 1.48503 * 109.46804 * 205.01973 * 3 2 1 6 6 H 1.48497 * 109.47335 * 325.02349 * 3 2 1 7 7 C 1.40046 * 119.99507 * 179.72701 * 2 1 3 8 8 H 1.08000 * 119.99989 * 186.78898 * 7 2 1 9 9 C 1.46375 * 120.00291 * 6.79100 * 7 2 1 10 10 O 1.21683 * 119.99811 * 6.75130 * 9 7 2 11 11 N 1.34776 * 119.99864 * 186.74463 * 9 7 2 12 12 C 1.46506 * 119.99783 * 180.02562 * 11 9 7 13 13 C 1.53002 * 109.46844 * 180.02562 * 12 11 9 14 14 H 1.08996 * 109.48206 * 60.02396 * 13 12 11 15 15 C 1.53093 * 109.47631 * 180.02562 * 13 12 11 16 16 C 1.53178 * 109.16375 * 177.58932 * 15 13 12 17 17 C 1.53179 * 109.03607 * 303.02529 * 16 15 13 18 18 C 1.53086 * 109.16816 * 56.97449 * 17 16 15 19 19 O 1.42900 * 109.48081 * 299.99732 * 13 12 11 20 20 H 0.97000 * 119.99679 * 359.97438 * 1 2 3 21 21 H 0.97002 * 120.00485 * 0.02562 * 11 9 7 22 22 H 1.09001 * 109.47220 * 300.00514 * 12 11 9 23 23 H 1.08998 * 109.46909 * 60.00484 * 12 11 9 24 24 H 1.09000 * 109.52387 * 297.49955 * 15 13 12 25 25 H 1.09002 * 109.52584 * 57.68792 * 15 13 12 26 26 H 1.08999 * 109.54702 * 183.15206 * 16 15 13 27 27 H 1.08999 * 109.53973 * 62.88644 * 16 15 13 28 28 H 1.09001 * 109.51894 * 297.07118 * 17 16 15 29 29 H 1.09004 * 109.57249 * 176.91714 * 17 16 15 30 30 H 1.08995 * 109.48702 * 182.41109 * 18 17 16 31 31 H 1.09008 * 109.48947 * 62.38193 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.3830 2.1071 1.3948 5 1 3.5870 1.4120 -0.5922 6 1 1.4949 2.6200 -0.8025 7 6 2.0069 -1.2129 0.0058 8 1 3.0812 -1.2157 0.1164 9 6 1.2827 -2.4768 -0.1381 10 8 0.0912 -2.4705 -0.3853 11 7 1.9355 -3.6473 0.0031 12 6 1.2108 -4.9123 -0.1414 13 6 2.1772 -6.0803 0.0656 14 1 2.6094 -6.0218 1.0645 15 6 1.4202 -7.4023 -0.0860 16 6 2.4053 -8.5658 0.0627 17 6 3.5206 -8.4120 -0.9759 18 6 4.1965 -7.0510 -0.7900 19 8 3.2198 -6.0147 -0.9094 20 1 -0.4850 0.8401 0.0004 21 1 2.8853 -3.6524 0.2005 22 1 0.4158 -4.9627 0.6026 23 1 0.7780 -4.9710 -1.1401 24 1 0.6532 -7.4734 0.6852 25 1 0.9533 -7.4439 -1.0701 26 1 1.8832 -9.5087 -0.0997 27 1 2.8355 -8.5535 1.0641 28 1 3.0962 -8.4740 -1.9780 29 1 4.2561 -9.2053 -0.8422 30 1 4.9627 -6.9182 -1.5537 31 1 4.6557 -7.0050 0.1976 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042824293.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:16 Heat of formation + Delta-G solvation = -131.307872 kcal Electronic energy + Delta-G solvation = -14245.274634 eV Core-core repulsion = 11717.716015 eV Total energy + Delta-G solvation = -2527.558619 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.52148 -39.14475 -35.44170 -34.55584 -34.48669 -32.24688 -28.98743 -27.20075 -24.98411 -23.20988 -21.76064 -21.06962 -19.26275 -17.50786 -17.40994 -16.82257 -16.39386 -15.89920 -15.38294 -15.27080 -15.02822 -14.50818 -13.92362 -13.61575 -13.40016 -13.13102 -12.98515 -12.71941 -12.59764 -12.20315 -12.02274 -11.94961 -11.59791 -11.21520 -10.92101 -10.39923 -9.87353 -9.48592 -8.32269 -6.84930 1.40104 1.42478 1.58713 2.25684 2.46146 2.78572 3.10844 3.61415 3.79801 3.94027 3.96787 4.09223 4.18162 4.31344 4.51960 4.67324 4.70846 4.81239 4.90756 4.95818 5.08271 5.13806 5.21176 5.32021 5.40559 5.87755 6.20611 6.25956 6.36590 6.86386 7.54321 8.47908 8.66327 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.064295 B = 0.006287 C = 0.005845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.386027 B = 4452.452449 C = 4789.163971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.029 3.971 3 Si 1.001 2.999 4 H -0.258 1.258 5 H -0.251 1.251 6 H -0.272 1.272 7 C -0.576 4.576 8 H 0.086 0.914 9 C 0.537 3.463 10 O -0.637 6.637 11 N -0.750 5.750 12 C 0.140 3.860 13 C 0.093 3.907 14 H 0.071 0.929 15 C -0.147 4.147 16 C -0.117 4.117 17 C -0.153 4.153 18 C 0.050 3.950 19 O -0.401 6.401 20 H 0.276 0.724 21 H 0.395 0.605 22 H 0.054 0.946 23 H 0.030 0.970 24 H 0.084 0.916 25 H 0.063 0.937 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.096 0.904 30 H 0.101 0.899 31 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.467 -14.290 1.394 17.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.186 4.186 3 Si 0.820 3.180 4 H -0.182 1.182 5 H -0.174 1.174 6 H -0.197 1.197 7 C -0.613 4.613 8 H 0.105 0.895 9 C 0.341 3.659 10 O -0.525 6.525 11 N -0.404 5.404 12 C 0.015 3.985 13 C 0.036 3.964 14 H 0.089 0.911 15 C -0.185 4.185 16 C -0.154 4.154 17 C -0.190 4.190 18 C -0.026 4.026 19 O -0.321 6.321 20 H 0.086 0.914 21 H 0.229 0.771 22 H 0.072 0.928 23 H 0.049 0.951 24 H 0.102 0.898 25 H 0.082 0.918 26 H 0.102 0.898 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.114 0.886 30 H 0.119 0.881 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.446 -14.099 1.078 16.470 hybrid contribution 0.266 0.515 0.116 0.591 sum 8.712 -13.584 1.194 16.182 Atomic orbital electron populations 1.70160 1.09654 1.29120 1.36458 1.27005 0.95527 1.05038 0.91003 0.84969 0.78782 0.74878 0.79387 1.18244 1.17388 1.19701 1.21422 0.95302 0.90297 1.54238 0.89546 1.18653 0.86378 0.84400 0.76428 1.90526 1.18054 1.88097 1.55839 1.45718 1.12280 1.04573 1.77847 1.21031 0.94268 0.83635 0.99541 1.22224 0.88115 0.93928 0.92179 0.91110 1.22142 0.99212 0.94001 1.03167 1.21587 0.96199 0.97838 0.99771 1.22184 0.99142 0.97867 0.99856 1.22822 0.90511 0.86828 1.02440 1.87996 1.37619 1.51570 1.54909 0.91430 0.77147 0.92765 0.95125 0.89779 0.91831 0.89798 0.90769 0.91916 0.88552 0.88072 0.92212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.86 11.91 21.84 0.26 -51.60 16 2 C 0.03 1.68 5.48 85.30 0.47 2.14 16 3 Si 1.00 42.05 29.56 68.60 2.03 44.07 16 4 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 5 H -0.25 -9.87 7.11 99.48 0.71 -9.17 16 6 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 7 C -0.58 -34.15 9.53 24.83 0.24 -33.92 16 8 H 0.09 4.62 7.86 -2.91 -0.02 4.60 16 9 C 0.54 33.02 7.72 86.36 0.67 33.69 16 10 O -0.64 -44.74 15.11 -4.30 -0.06 -44.80 16 11 N -0.75 -36.69 5.44 -467.40 -2.54 -39.24 16 12 C 0.14 5.87 5.37 86.38 0.46 6.34 16 13 C 0.09 2.84 2.73 30.63 0.08 2.93 16 14 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 15 C -0.15 -3.50 5.42 30.68 0.17 -3.34 16 16 C -0.12 -2.03 6.03 30.71 0.19 -1.84 16 17 C -0.15 -2.64 6.14 30.68 0.19 -2.45 16 18 C 0.05 1.07 6.84 72.01 0.49 1.57 16 19 O -0.40 -12.64 10.15 -148.98 -1.51 -14.15 16 20 H 0.28 15.61 8.29 -92.71 -0.77 14.84 16 21 H 0.40 17.21 8.33 -92.71 -0.77 16.44 16 22 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 23 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 Total: -1.00 -78.39 262.79 1.46 -76.93 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: 0.34 Total: 23.67 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: 2.95 Total: 5.12 kcal Atomic # 7 Polarization: -88.56 SS G_CDS: -2.28 Total: -90.84 kcal Atomic # 8 Polarization: -57.38 SS G_CDS: -1.58 Total: -58.96 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.07 kcal Total: -78.39 1.46 -76.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042824293.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.374 kcal (2) G-P(sol) polarization free energy of solvation -78.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds