Wall clock time and date at job start Sun Mar 29 2020 22:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86806 * 120.00092 * 2 1 4 4 H 1.48494 * 109.47401 * 270.00580 * 3 2 1 5 5 H 1.48504 * 109.46743 * 30.00623 * 3 2 1 6 6 H 1.48501 * 109.47221 * 150.00253 * 3 2 1 7 7 C 1.40049 * 120.00126 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00188 * 179.97438 * 7 2 1 9 9 C 1.46370 * 119.99888 * 359.97438 * 7 2 1 10 10 O 1.21695 * 119.99967 * 8.82518 * 9 7 2 11 11 N 1.34778 * 120.00287 * 188.82754 * 9 7 2 12 12 C 1.46962 * 120.64829 * 6.43104 * 11 9 7 13 13 C 1.53193 * 108.88818 * 126.46723 * 12 11 9 14 14 C 1.53043 * 109.31338 * 54.55365 * 13 12 11 15 15 C 1.53046 * 109.53493 * 298.63740 * 14 13 12 16 16 C 1.46928 * 120.63393 * 186.25092 * 11 9 7 17 17 H 1.08996 * 109.58804 * 113.67609 * 16 11 9 18 18 C 1.52997 * 109.58394 * 353.39247 * 16 11 9 19 19 O 1.42893 * 109.47314 * 69.09321 * 18 16 11 20 20 H 0.96996 * 120.00047 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.59852 * 6.60379 * 12 11 9 22 22 H 1.09001 * 109.58026 * 246.31787 * 12 11 9 23 23 H 1.08998 * 109.49297 * 294.60294 * 13 12 11 24 24 H 1.08998 * 109.49768 * 174.50178 * 13 12 11 25 25 H 1.08999 * 109.45838 * 178.61590 * 14 13 12 26 26 H 1.08994 * 109.46010 * 58.65471 * 14 13 12 27 27 H 1.09000 * 109.49511 * 301.41170 * 15 14 13 28 28 H 1.08998 * 109.51902 * 181.33516 * 15 14 13 29 29 H 1.09004 * 109.46752 * 189.09453 * 18 16 11 30 30 H 1.09005 * 109.47513 * 309.09051 * 18 16 11 31 31 H 0.96705 * 114.00504 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.4882 2.0466 -1.4000 5 1 1.4382 2.6526 0.7002 6 1 3.5384 1.4402 0.7000 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2129 -0.0010 9 6 1.2751 -2.4804 -0.0005 10 8 0.0689 -2.4866 -0.1618 11 7 1.9371 -3.6408 0.1781 12 6 3.3679 -3.6431 0.5134 13 6 3.5796 -4.4823 1.7775 14 6 2.9811 -5.8750 1.5666 15 6 1.4765 -5.7525 1.3144 16 6 1.2410 -4.9279 0.0451 17 1 1.6310 -5.4667 -0.8184 18 6 -0.2583 -4.6837 -0.1370 19 8 -0.4924 -4.0902 -1.4156 20 1 -0.4850 0.8400 0.0004 21 1 3.7031 -2.6215 0.6926 22 1 3.9356 -4.0747 -0.3110 23 1 3.0878 -3.9989 2.6215 24 1 4.6469 -4.5719 1.9801 25 1 3.1521 -6.4821 2.4556 26 1 3.4560 -6.3480 0.7072 27 1 1.0046 -5.2572 2.1629 28 1 1.0465 -6.7461 1.1878 29 1 -0.7912 -5.6325 -0.0737 30 1 -0.6151 -4.0138 0.6453 31 1 -1.4240 -3.9074 -1.5999 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044382446.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:52 Heat of formation + Delta-G solvation = -75.541679 kcal Electronic energy + Delta-G solvation = -15230.223924 eV Core-core repulsion = 12705.083508 eV Total energy + Delta-G solvation = -2525.140415 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.90026 -35.70457 -35.11057 -32.45356 -31.54168 -30.93558 -26.51354 -25.35111 -23.39317 -21.44383 -20.27702 -18.72900 -16.44814 -16.00543 -15.57031 -14.85438 -14.32242 -13.85204 -13.81889 -13.19812 -12.98481 -12.76207 -12.08607 -11.75994 -11.50752 -11.13221 -11.07420 -10.92969 -10.51395 -10.41437 -10.39293 -10.16756 -9.90030 -9.61433 -8.90312 -8.60198 -7.09902 -6.95101 -6.06409 -4.52958 3.17445 3.24285 3.26677 4.14205 4.60723 4.65286 5.05675 5.28179 5.33467 5.53725 5.85248 5.90423 5.91322 6.03178 6.16097 6.20093 6.25518 6.30736 6.36293 6.52535 6.62464 6.65413 6.81430 7.09997 7.52351 7.72119 8.25016 8.47254 8.82571 9.11632 9.58420 10.68630 10.90475 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.034136 B = 0.012021 C = 0.009407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.061380 B = 2328.611865 C = 2975.733437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.090 3.910 3 Si 0.903 3.097 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.068 0.932 9 C 0.562 3.438 10 O -0.545 6.545 11 N -0.637 5.637 12 C 0.122 3.878 13 C -0.136 4.136 14 C -0.113 4.113 15 C -0.126 4.126 16 C 0.154 3.846 17 H 0.048 0.952 18 C 0.100 3.900 19 O -0.545 6.545 20 H 0.266 0.734 21 H 0.092 0.908 22 H 0.038 0.962 23 H 0.063 0.937 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.003 0.997 30 H 0.072 0.928 31 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.177 -7.635 2.850 9.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.129 4.129 3 Si 0.728 3.272 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.582 4.582 8 H 0.086 0.914 9 C 0.367 3.633 10 O -0.426 6.426 11 N -0.376 5.376 12 C -0.002 4.002 13 C -0.174 4.174 14 C -0.150 4.150 15 C -0.165 4.165 16 C 0.049 3.951 17 H 0.066 0.934 18 C 0.022 3.978 19 O -0.348 6.348 20 H 0.076 0.924 21 H 0.110 0.890 22 H 0.056 0.944 23 H 0.082 0.918 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.021 0.979 30 H 0.090 0.910 31 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 3.971 -7.562 2.714 8.962 hybrid contribution 0.033 0.751 0.083 0.756 sum 4.004 -6.811 2.797 8.381 Atomic orbital electron populations 1.69989 1.06922 1.26965 1.36292 1.25659 0.94571 1.00016 0.92656 0.86456 0.80176 0.81811 0.78779 1.19838 1.20610 1.19024 1.20973 0.93427 0.89480 1.54312 0.91355 1.18091 0.86996 0.81921 0.76305 1.90507 1.14456 1.84666 1.52969 1.48162 1.08436 1.04778 1.76225 1.21383 0.83766 1.00940 0.94118 1.21964 0.99753 0.95948 0.99776 1.21439 0.95689 0.97179 1.00713 1.21869 0.96460 0.99272 0.98922 1.20759 0.92730 0.86441 0.95122 0.93357 1.21983 0.93825 0.92774 0.89185 1.86540 1.29549 1.84061 1.34699 0.92363 0.89022 0.94380 0.91804 0.92101 0.92664 0.92411 0.91730 0.92133 0.97943 0.90991 0.79419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.98 11.87 55.55 0.66 -22.32 16 2 C 0.09 2.51 5.50 -17.37 -0.10 2.42 16 3 Si 0.90 20.38 29.56 -169.99 -5.02 15.35 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 7 C -0.54 -15.50 8.70 -35.63 -0.31 -15.81 16 8 H 0.07 1.80 5.97 -52.49 -0.31 1.49 16 9 C 0.56 16.03 7.31 -12.99 -0.10 15.94 16 10 O -0.54 -16.67 9.27 -20.02 -0.19 -16.85 16 11 N -0.64 -14.98 2.98 -166.84 -0.50 -15.48 16 12 C 0.12 2.39 6.28 -3.69 -0.02 2.36 16 13 C -0.14 -2.15 6.08 -26.61 -0.16 -2.31 16 14 C -0.11 -1.63 5.88 -26.68 -0.16 -1.79 16 15 C -0.13 -2.08 5.36 -26.61 -0.14 -2.22 16 16 C 0.15 3.19 3.16 -67.60 -0.21 2.98 16 17 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 18 C 0.10 2.17 5.60 37.16 0.21 2.38 16 19 O -0.55 -13.10 10.90 -60.45 -0.66 -13.76 16 20 H 0.27 7.23 8.29 -40.82 -0.34 6.89 16 21 H 0.09 1.88 5.52 -51.93 -0.29 1.59 16 22 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.00 0.05 8.13 -51.93 -0.42 -0.37 16 30 H 0.07 1.78 6.32 -51.93 -0.33 1.45 16 31 H 0.36 7.43 9.12 45.56 0.42 7.84 16 LS Contribution 248.26 15.07 3.74 3.74 Total: -1.00 -33.28 248.26 -6.41 -39.69 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -3.45 Total: 5.68 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: -0.99 Total: 3.95 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: 0.16 Total: -37.80 kcal Atomic # 8 Polarization: -29.77 SS G_CDS: -0.84 Total: -30.61 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -33.28 -6.41 -39.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044382446.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.850 kcal (2) G-P(sol) polarization free energy of solvation -33.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds