Wall clock time and date at job start Sun Mar 29 2020 22:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86806 * 120.00092 * 2 1 4 4 H 1.48494 * 109.47401 * 270.00580 * 3 2 1 5 5 H 1.48504 * 109.46743 * 30.00623 * 3 2 1 6 6 H 1.48501 * 109.47221 * 150.00253 * 3 2 1 7 7 C 1.40049 * 120.00126 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00188 * 179.97438 * 7 2 1 9 9 C 1.46370 * 119.99888 * 359.97438 * 7 2 1 10 10 O 1.21695 * 119.99967 * 8.82518 * 9 7 2 11 11 N 1.34778 * 120.00287 * 188.82754 * 9 7 2 12 12 C 1.46962 * 120.64829 * 6.43104 * 11 9 7 13 13 C 1.53193 * 108.88818 * 126.46723 * 12 11 9 14 14 C 1.53043 * 109.31338 * 54.55365 * 13 12 11 15 15 C 1.53046 * 109.53493 * 298.63740 * 14 13 12 16 16 C 1.46928 * 120.63393 * 186.25092 * 11 9 7 17 17 H 1.08996 * 109.58804 * 113.67609 * 16 11 9 18 18 C 1.52997 * 109.58394 * 353.39247 * 16 11 9 19 19 O 1.42893 * 109.47314 * 69.09321 * 18 16 11 20 20 H 0.96996 * 120.00047 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.59852 * 6.60379 * 12 11 9 22 22 H 1.09001 * 109.58026 * 246.31787 * 12 11 9 23 23 H 1.08998 * 109.49297 * 294.60294 * 13 12 11 24 24 H 1.08998 * 109.49768 * 174.50178 * 13 12 11 25 25 H 1.08999 * 109.45838 * 178.61590 * 14 13 12 26 26 H 1.08994 * 109.46010 * 58.65471 * 14 13 12 27 27 H 1.09000 * 109.49511 * 301.41170 * 15 14 13 28 28 H 1.08998 * 109.51902 * 181.33516 * 15 14 13 29 29 H 1.09004 * 109.46752 * 189.09453 * 18 16 11 30 30 H 1.09005 * 109.47513 * 309.09051 * 18 16 11 31 31 H 0.96705 * 114.00504 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.4882 2.0466 -1.4000 5 1 1.4382 2.6526 0.7002 6 1 3.5384 1.4402 0.7000 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2129 -0.0010 9 6 1.2751 -2.4804 -0.0005 10 8 0.0689 -2.4866 -0.1618 11 7 1.9371 -3.6408 0.1781 12 6 3.3679 -3.6431 0.5134 13 6 3.5796 -4.4823 1.7775 14 6 2.9811 -5.8750 1.5666 15 6 1.4765 -5.7525 1.3144 16 6 1.2410 -4.9279 0.0451 17 1 1.6310 -5.4667 -0.8184 18 6 -0.2583 -4.6837 -0.1370 19 8 -0.4924 -4.0902 -1.4156 20 1 -0.4850 0.8400 0.0004 21 1 3.7031 -2.6215 0.6926 22 1 3.9356 -4.0747 -0.3110 23 1 3.0878 -3.9989 2.6215 24 1 4.6469 -4.5719 1.9801 25 1 3.1521 -6.4821 2.4556 26 1 3.4560 -6.3480 0.7072 27 1 1.0046 -5.2572 2.1629 28 1 1.0465 -6.7461 1.1878 29 1 -0.7912 -5.6325 -0.0737 30 1 -0.6151 -4.0138 0.6453 31 1 -1.4240 -3.9074 -1.5999 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044382446.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:52 Heat of formation + Delta-G solvation = -99.890981 kcal Electronic energy + Delta-G solvation = -15231.279789 eV Core-core repulsion = 12705.083508 eV Total energy + Delta-G solvation = -2526.196280 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.63378 -37.46852 -36.97403 -34.55321 -33.21003 -32.51528 -28.46230 -27.11267 -24.93207 -23.17471 -21.77578 -20.50470 -18.35548 -17.84655 -17.53818 -16.55285 -16.08637 -15.45765 -15.23057 -14.85538 -14.72268 -14.32658 -13.85977 -13.52428 -13.26223 -12.91099 -12.75658 -12.63877 -12.35206 -12.01439 -11.87102 -11.68364 -11.37760 -11.20945 -10.92199 -10.48347 -9.19314 -8.80927 -8.15226 -6.72027 1.39166 1.40793 1.54258 2.26306 2.57565 2.90528 3.48786 3.78837 3.96001 4.08272 4.23453 4.39318 4.42628 4.57510 4.62270 4.66865 4.90157 5.01209 5.08794 5.14115 5.17259 5.25754 5.30997 5.44004 5.56681 5.86495 6.22193 6.55329 6.97107 7.13035 7.57978 8.61246 8.81453 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.034136 B = 0.012021 C = 0.009407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.061380 B = 2328.611865 C = 2975.733437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.033 3.967 3 Si 0.987 3.013 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.250 1.250 7 C -0.575 4.575 8 H 0.081 0.919 9 C 0.541 3.459 10 O -0.579 6.579 11 N -0.644 5.644 12 C 0.114 3.886 13 C -0.128 4.128 14 C -0.108 4.108 15 C -0.119 4.119 16 C 0.145 3.855 17 H 0.052 0.948 18 C 0.101 3.899 19 O -0.571 6.571 20 H 0.270 0.730 21 H 0.074 0.926 22 H 0.053 0.947 23 H 0.047 0.953 24 H 0.095 0.905 25 H 0.087 0.913 26 H 0.071 0.929 27 H 0.048 0.952 28 H 0.092 0.908 29 H 0.043 0.957 30 H 0.032 0.968 31 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.149 -8.633 3.475 11.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.181 4.181 3 Si 0.807 3.193 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.173 1.173 7 C -0.612 4.612 8 H 0.099 0.901 9 C 0.345 3.655 10 O -0.463 6.463 11 N -0.382 5.382 12 C -0.009 4.009 13 C -0.167 4.167 14 C -0.145 4.145 15 C -0.157 4.157 16 C 0.041 3.959 17 H 0.070 0.930 18 C 0.024 3.976 19 O -0.376 6.376 20 H 0.080 0.920 21 H 0.092 0.908 22 H 0.071 0.929 23 H 0.066 0.934 24 H 0.113 0.887 25 H 0.105 0.895 26 H 0.090 0.910 27 H 0.067 0.933 28 H 0.110 0.890 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 5.978 -8.607 3.353 11.003 hybrid contribution -0.605 0.967 -0.138 1.148 sum 5.373 -7.641 3.215 9.879 Atomic orbital electron populations 1.70150 1.09118 1.28379 1.37612 1.26802 0.95488 1.04338 0.91485 0.85176 0.78996 0.75979 0.79104 1.19212 1.19795 1.17339 1.21477 0.94343 0.90475 1.54902 0.90086 1.18451 0.87029 0.83651 0.76411 1.90484 1.15730 1.85899 1.54219 1.48074 1.10065 1.04675 1.75354 1.21593 0.81561 1.01116 0.96631 1.21907 1.01943 0.96021 0.96811 1.21457 0.93710 0.96561 1.02793 1.21843 0.98477 0.99671 0.95758 1.21076 0.91539 0.85708 0.97568 0.93000 1.22015 0.95305 0.93320 0.86965 1.86488 1.30660 1.84641 1.35771 0.91999 0.90779 0.92893 0.93433 0.88677 0.89461 0.91031 0.93273 0.88963 0.93922 0.94944 0.78420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.57 11.87 21.84 0.26 -50.32 16 2 C 0.03 1.89 5.50 85.30 0.47 2.36 16 3 Si 0.99 42.17 29.56 68.60 2.03 44.20 16 4 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 5 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 6 H -0.25 -9.92 7.11 99.48 0.71 -9.21 16 7 C -0.58 -33.44 8.70 24.83 0.22 -33.22 16 8 H 0.08 4.32 5.97 -2.91 -0.02 4.30 16 9 C 0.54 31.83 7.31 86.36 0.63 32.46 16 10 O -0.58 -37.04 9.27 19.78 0.18 -36.86 16 11 N -0.64 -30.43 2.98 -799.99 -2.38 -32.81 16 12 C 0.11 4.33 6.28 86.36 0.54 4.87 16 13 C -0.13 -3.72 6.08 30.67 0.19 -3.53 16 14 C -0.11 -2.69 5.88 30.62 0.18 -2.51 16 15 C -0.12 -3.60 5.36 30.67 0.16 -3.44 16 16 C 0.15 5.87 3.16 44.97 0.14 6.02 16 17 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 18 C 0.10 4.45 5.60 71.98 0.40 4.85 16 19 O -0.57 -28.18 10.90 -124.87 -1.36 -29.54 16 20 H 0.27 15.17 8.29 -92.71 -0.77 14.40 16 21 H 0.07 3.03 5.52 -2.39 -0.01 3.01 16 22 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 23 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 25 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.09 2.22 8.14 -2.39 -0.02 2.21 16 29 H 0.04 1.52 8.13 -2.38 -0.02 1.50 16 30 H 0.03 1.67 6.32 -2.38 -0.02 1.66 16 31 H 0.37 15.89 9.12 -74.05 -0.68 15.21 16 Total: -1.00 -74.98 248.26 2.12 -72.86 By element: Atomic # 1 Polarization: 24.16 SS G_CDS: 0.46 Total: 24.61 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: 2.94 Total: 7.85 kcal Atomic # 7 Polarization: -81.00 SS G_CDS: -2.12 Total: -83.12 kcal Atomic # 8 Polarization: -65.22 SS G_CDS: -1.18 Total: -66.39 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -74.98 2.12 -72.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044382446.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.032 kcal (2) G-P(sol) polarization free energy of solvation -74.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds